Wall clock time and date at job start Tue Mar 31 2020 14:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.49867 * 2 1 4 4 C 1.53190 * 109.50256 * 239.93509 * 2 1 3 5 5 N 1.46920 * 108.78066 * 185.41678 * 4 2 1 6 6 C 1.34780 * 120.62933 * 233.63435 * 5 4 2 7 7 O 1.21496 * 120.00134 * 172.93690 * 6 5 4 8 8 C 1.48204 * 119.99865 * 352.92865 * 6 5 4 9 9 C 1.36318 * 126.38470 * 173.04235 * 8 6 5 10 10 C 1.42339 * 104.00997 * 179.97438 * 9 8 6 11 11 O 1.21978 * 127.15124 * 179.97438 * 10 9 8 12 12 N 1.34827 * 105.70212 * 0.02562 * 10 9 8 13 13 C 1.46507 * 124.56661 * 180.02562 * 12 10 9 14 14 O 1.20922 * 110.86944 * 359.69831 * 12 10 9 15 15 C 1.46923 * 118.74170 * 53.60557 * 5 4 2 16 16 C 1.53192 * 108.77402 * 306.39416 * 15 5 4 17 17 C 1.53039 * 109.49827 * 120.06425 * 2 1 3 18 18 H 1.08999 * 109.43048 * 61.27528 * 17 2 1 19 19 C 1.53005 * 109.48485 * 301.32261 * 17 2 1 20 20 N 1.46500 * 109.47115 * 174.91067 * 19 17 2 21 21 C 1.36934 * 120.00084 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99866 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00095 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99704 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99994 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47063 * 60.00291 * 25 23 21 27 27 H 1.48496 * 109.46892 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47286 * 300.00167 * 25 23 21 29 29 H 1.08998 * 109.47005 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47016 * 300.06983 * 1 2 3 31 31 H 1.08998 * 109.47000 * 60.06613 * 1 2 3 32 32 H 1.09009 * 109.58665 * 65.62340 * 4 2 1 33 33 H 1.09002 * 109.58597 * 305.20737 * 4 2 1 34 34 H 1.07995 * 127.99785 * 359.97438 * 9 8 6 35 35 H 1.09000 * 109.47328 * 89.99789 * 13 12 10 36 36 H 1.09000 * 109.47093 * 209.99812 * 13 12 10 37 37 H 1.09000 * 109.47086 * 329.99995 * 13 12 10 38 38 H 1.08999 * 109.58629 * 186.60783 * 15 5 4 39 39 H 1.08995 * 109.70319 * 66.24691 * 15 5 4 40 40 H 1.08999 * 109.49756 * 174.58413 * 16 15 5 41 41 H 1.08997 * 109.49864 * 294.65078 * 16 15 5 42 42 H 1.08997 * 109.47136 * 294.91413 * 19 17 2 43 43 H 1.09004 * 109.47198 * 54.91336 * 19 17 2 44 44 H 0.97000 * 119.99868 * 0.02562 * 20 19 17 45 45 H 0.96999 * 119.99489 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5046 -0.8288 -1.1697 6 6 4.2812 -0.3849 -2.1779 7 8 5.4890 -0.3588 -2.0483 8 6 3.6619 0.0711 -3.4448 9 6 4.3037 0.6643 -4.4910 10 6 3.2701 0.8988 -5.4411 11 8 3.3829 1.4166 -6.5397 12 7 2.1400 0.4307 -4.8739 13 6 0.8177 0.4658 -5.5036 14 8 2.3660 -0.0279 -3.7780 15 6 4.1053 -1.4267 0.0304 16 6 3.5709 -0.6954 1.2658 17 6 2.0408 -0.7227 1.2485 18 1 1.6961 -1.7567 1.2355 19 6 1.5043 -0.0227 2.4988 20 7 1.8922 -0.7838 3.6890 21 6 1.5219 -0.3459 4.9325 22 1 0.9435 0.5603 5.0358 23 6 1.8899 -1.0668 6.0602 24 7 2.5952 -2.1709 5.9343 25 14 1.3840 -0.4698 7.7565 26 1 -0.0973 -0.4078 7.8380 27 1 1.8980 -1.4092 8.7854 28 1 1.9500 0.8824 7.9945 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 1.7638 -0.1573 -2.1390 33 1 1.6053 -1.7212 -1.2985 34 1 5.3536 0.9015 -4.5787 35 1 0.6633 -0.4489 -6.0760 36 1 0.0505 0.5462 -4.7334 37 1 0.7553 1.3261 -6.1699 38 1 5.1896 -1.3246 -0.0141 39 1 3.8397 -2.4823 0.0874 40 1 3.9334 -1.1903 2.1668 41 1 3.9164 0.3383 1.2545 42 1 1.9204 0.9829 2.5590 43 1 0.4173 0.0366 2.4438 44 1 2.4120 -1.5975 3.5962 45 1 2.8520 -2.6748 6.7224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184249561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:04 Heat of formation + Delta-G solvation = 6.927426 kcal Electronic energy + Delta-G solvation = -28050.802674 eV Core-core repulsion = 24072.875476 eV Total energy + Delta-G solvation = -3977.927198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.26361 -41.52334 -39.46025 -39.35703 -36.69234 -35.46318 -34.89395 -33.51839 -33.40677 -32.28701 -29.34138 -28.25859 -27.68039 -25.85267 -25.01680 -24.50219 -23.02949 -22.79997 -21.37156 -20.69529 -19.55588 -19.30491 -19.04054 -18.31688 -17.55574 -16.75987 -16.52209 -16.42681 -16.13759 -15.77974 -15.54830 -15.36870 -15.20291 -15.01472 -14.95040 -14.52277 -14.33739 -14.22267 -14.01637 -13.80521 -13.62761 -13.13016 -12.95902 -12.86345 -12.79857 -12.65868 -12.22912 -11.95914 -11.90485 -11.80970 -11.63063 -11.42229 -11.35228 -11.12608 -11.10752 -10.86305 -9.87905 -9.66856 -8.94054 -7.93113 -5.20241 -0.64871 0.47787 1.34003 1.48322 1.49107 1.50467 1.56589 1.76816 2.11870 2.57675 3.11582 3.40603 3.54417 3.66925 3.74256 3.83004 3.84817 3.98108 4.21453 4.27400 4.30522 4.37497 4.37719 4.51547 4.61180 4.63005 4.65652 4.69501 4.72533 4.77057 4.86787 4.94050 4.99137 5.11498 5.14228 5.16519 5.28311 5.40774 5.47674 5.52291 5.60094 5.98283 6.30102 6.39491 6.60619 6.86029 7.36824 8.14713 8.37175 9.30095 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.002620 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.035998 B =10685.113055 C =11381.766071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.070 0.930 4 C 0.106 3.894 5 N -0.587 5.587 6 C 0.601 3.399 7 O -0.532 6.532 8 C 0.040 3.960 9 C -0.244 4.244 10 C 0.471 3.529 11 O -0.565 6.565 12 N -0.445 5.445 13 C 0.092 3.908 14 O 0.019 5.981 15 C 0.118 3.882 16 C -0.120 4.120 17 C -0.080 4.080 18 H 0.075 0.925 19 C 0.156 3.844 20 N -0.743 5.743 21 C -0.244 4.244 22 H 0.072 0.928 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.969 3.031 26 H -0.278 1.278 27 H -0.296 1.296 28 H -0.281 1.281 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.196 0.804 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.008 0.992 43 H 0.031 0.969 44 H 0.375 0.625 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 2.422 -22.809 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.015 4.015 5 N -0.318 5.318 6 C 0.386 3.614 7 O -0.409 6.409 8 C -0.019 4.019 9 C -0.269 4.269 10 C 0.269 3.731 11 O -0.450 6.450 12 N -0.207 5.207 13 C -0.042 4.042 14 O 0.008 5.992 15 C -0.003 4.003 16 C -0.158 4.158 17 C -0.099 4.099 18 H 0.094 0.906 19 C 0.029 3.971 20 N -0.386 5.386 21 C -0.376 4.376 22 H 0.090 0.910 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.798 3.202 26 H -0.204 1.204 27 H -0.222 1.222 28 H -0.207 1.207 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.213 0.787 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.049 0.951 44 H 0.208 0.792 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.529 2.724 -23.159 23.965 hybrid contribution 0.392 0.026 1.353 1.409 sum -5.136 2.751 -21.806 22.571 Atomic orbital electron populations 1.21810 0.92610 1.03008 1.02742 1.21399 0.97432 0.99368 0.92733 0.91136 1.22431 0.76898 1.03213 0.98998 1.48165 1.08405 1.58005 1.17213 1.16926 0.85610 0.77974 0.80906 1.90876 1.13950 1.55785 1.80314 1.23062 0.81930 1.00281 0.96624 1.23436 1.03041 1.06686 0.93706 1.18412 0.83509 0.82701 0.88434 1.90945 1.83318 1.48980 1.21732 1.46499 1.12820 1.54105 1.07306 1.22625 0.76307 1.06033 0.99230 1.84250 1.25747 1.68462 1.20719 1.21774 0.99185 0.97512 0.81811 1.21816 0.95981 1.00719 0.97270 1.21266 0.94509 1.00192 0.93948 0.90626 1.20913 0.96990 0.93467 0.85685 1.42567 1.65347 1.29056 1.01626 1.19562 1.26803 1.05910 0.85283 0.90993 1.25491 1.01737 0.98050 1.01334 1.69786 1.44368 1.18489 1.29188 0.85283 0.77950 0.77054 0.79916 1.20361 1.22248 1.20732 0.91648 0.92812 0.90241 0.87216 0.88164 0.78695 0.88300 0.85597 0.87568 0.89321 0.88806 0.91634 0.92640 0.97386 0.95091 0.79222 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.82 71.98 0.63 -1.62 16 2 C -0.09 -1.67 2.41 -10.72 -0.03 -1.70 16 3 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 4 C 0.11 1.55 5.42 86.36 0.47 2.02 16 5 N -0.59 -11.59 2.97 -821.94 -2.44 -14.03 16 6 C 0.60 13.38 7.70 86.89 0.67 14.05 16 7 O -0.53 -15.29 16.33 -3.70 -0.06 -15.35 16 8 C 0.04 0.75 6.87 24.47 0.17 0.91 16 9 C -0.24 -5.05 10.94 22.84 0.25 -4.80 16 10 C 0.47 10.52 8.02 85.25 0.68 11.20 16 11 O -0.57 -16.66 17.84 -5.24 -0.09 -16.75 16 12 N -0.45 -6.62 3.68 -492.73 -1.82 -8.43 16 13 C 0.09 0.54 11.22 127.77 1.43 1.97 16 14 O 0.02 0.27 7.57 70.39 0.53 0.80 16 15 C 0.12 2.65 6.44 86.36 0.56 3.21 16 16 C -0.12 -3.31 5.25 30.67 0.16 -3.14 16 17 C -0.08 -2.13 1.73 -10.77 -0.02 -2.15 16 18 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 19 C 0.16 5.63 5.41 86.38 0.47 6.10 16 20 N -0.74 -35.72 5.32 -343.44 -1.83 -37.55 16 21 C -0.24 -13.23 9.99 84.03 0.84 -12.39 16 22 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 24 N -0.97 -57.78 13.06 21.65 0.28 -57.50 16 25 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.05 6.30 -2.39 -0.02 1.04 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 1.27 4.26 -14.17 -0.06 1.21 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.11 0.68 8.03 -2.39 -0.02 0.66 16 38 H 0.09 2.16 7.00 -2.39 -0.02 2.15 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.19 7.15 -2.39 -0.02 2.18 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.03 1.10 6.14 -2.38 -0.01 1.09 16 44 H 0.38 19.04 6.85 -92.71 -0.63 18.41 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -73.90 364.72 3.69 -70.21 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.33 Total: 21.27 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.75 Total: 9.99 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -5.80 Total: -117.50 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: 0.38 Total: -31.31 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -73.90 3.69 -70.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184249561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.140 kcal (2) G-P(sol) polarization free energy of solvation -73.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds