Wall clock time and date at job start Tue Mar 31 2020 14:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.52248 * 2 1 4 4 C 1.53195 * 109.49521 * 120.07677 * 2 1 3 5 5 N 1.46923 * 108.77863 * 65.31648 * 4 2 1 6 6 C 1.34777 * 120.63140 * 233.63182 * 5 4 2 7 7 O 1.21491 * 120.00225 * 354.60202 * 6 5 4 8 8 C 1.48203 * 119.99719 * 174.60710 * 6 5 4 9 9 C 1.36315 * 126.38556 * 173.68889 * 8 6 5 10 10 C 1.42342 * 104.01365 * 179.97438 * 9 8 6 11 11 O 1.21973 * 127.15079 * 179.97438 * 10 9 8 12 12 N 1.34833 * 105.69894 * 0.02562 * 10 9 8 13 13 C 1.46501 * 124.56759 * 180.02562 * 12 10 9 14 14 O 1.20921 * 110.86686 * 359.70058 * 12 10 9 15 15 C 1.46925 * 118.73621 * 53.60864 * 5 4 2 16 16 C 1.53194 * 108.77471 * 306.39011 * 15 5 4 17 17 C 1.53036 * 109.50110 * 239.91223 * 2 1 3 18 18 H 1.08997 * 109.46031 * 181.39381 * 17 2 1 19 19 C 1.53003 * 109.45617 * 61.42022 * 17 2 1 20 20 N 1.46503 * 109.46766 * 174.97190 * 19 17 2 21 21 C 1.36936 * 119.99686 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00222 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99851 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00310 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00001 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47290 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47187 * 119.99660 * 25 23 21 28 28 H 1.48507 * 109.47218 * 239.99562 * 25 23 21 29 29 H 1.08998 * 109.47231 * 180.08655 * 1 2 3 30 30 H 1.09000 * 109.47543 * 300.08423 * 1 2 3 31 31 H 1.08996 * 109.47096 * 60.08632 * 1 2 3 32 32 H 1.09002 * 109.58913 * 185.10705 * 4 2 1 33 33 H 1.09008 * 109.58911 * 305.38653 * 4 2 1 34 34 H 1.08000 * 127.99442 * 359.97438 * 9 8 6 35 35 H 1.08998 * 109.47338 * 89.99900 * 13 12 10 36 36 H 1.08993 * 109.47432 * 210.00075 * 13 12 10 37 37 H 1.09006 * 109.47002 * 330.00629 * 13 12 10 38 38 H 1.08995 * 109.58818 * 66.18259 * 15 5 4 39 39 H 1.09003 * 109.58762 * 186.60415 * 15 5 4 40 40 H 1.09001 * 109.50202 * 294.68300 * 16 15 5 41 41 H 1.09009 * 109.49634 * 174.58472 * 16 15 5 42 42 H 1.08998 * 109.47480 * 294.96953 * 19 17 2 43 43 H 1.08999 * 109.47338 * 54.97793 * 19 17 2 44 44 H 0.96993 * 120.00221 * 0.02562 * 20 19 17 45 45 H 0.96996 * 119.99964 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7237 1.2497 5 7 1.6515 -2.1381 1.1698 6 6 0.9739 -2.7216 2.1782 7 8 0.7651 -2.1074 3.2054 8 6 0.4836 -4.1127 2.0340 9 6 -0.1052 -4.8674 3.0047 10 6 -0.3826 -6.1049 2.3584 11 8 -0.9113 -7.0892 2.8477 12 7 0.0614 -5.9633 1.0931 13 6 -0.0213 -7.0009 0.0622 14 8 0.5313 -4.8623 0.9222 15 6 2.0140 -2.9040 -0.0304 16 6 1.5030 -2.1559 -1.2657 17 6 2.0408 -0.7232 -1.2482 18 1 3.1305 -0.7445 -1.2351 19 6 1.5604 0.0166 -2.4983 20 7 2.1471 -0.6040 -3.6887 21 6 1.8588 -0.1079 -4.9320 22 1 1.1994 0.7411 -5.0351 23 6 2.4143 -0.6963 -6.0599 24 7 3.2184 -1.7307 -5.9343 25 14 2.0216 -0.0191 -7.7560 26 1 1.1003 1.1383 -7.6258 27 1 3.2772 0.4191 -8.4169 28 1 1.3748 -1.0766 -8.5737 29 1 -0.3633 -1.0276 0.0016 30 1 -0.3634 0.5151 0.8892 31 1 -0.3633 0.5125 -0.8907 32 1 3.1274 -0.6462 1.2982 33 1 1.6026 -0.2713 2.1392 34 1 -0.3130 -4.5903 4.0276 35 1 -0.9634 -6.9030 -0.4772 36 1 0.8095 -6.8882 -0.6343 37 1 0.0283 -7.9837 0.5311 38 1 3.0979 -3.0043 -0.0863 39 1 1.5554 -3.8919 0.0141 40 1 0.4132 -2.1356 -1.2539 41 1 1.8482 -2.6630 -2.1668 42 1 0.4735 -0.0386 -2.5581 43 1 1.8687 1.0607 -2.4437 44 1 2.7397 -1.3663 -3.5961 45 1 3.6068 -2.1416 -6.7225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184249562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:08 Heat of formation + Delta-G solvation = 34.107742 kcal Electronic energy + Delta-G solvation = -28399.640343 eV Core-core repulsion = 24422.891772 eV Total energy + Delta-G solvation = -3976.748571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.37140 -40.66741 -38.43857 -38.35785 -35.24036 -34.61821 -33.48547 -32.51148 -31.92981 -30.46490 -28.69653 -27.16271 -26.81876 -24.29170 -23.87831 -23.20848 -23.02912 -21.40505 -20.53770 -18.85942 -18.67858 -18.21799 -17.59691 -17.06822 -16.45890 -15.73669 -15.54189 -15.22513 -15.00142 -14.54675 -14.30620 -14.19880 -14.12129 -13.95660 -13.89844 -13.64391 -13.46877 -13.16003 -13.02619 -12.63562 -12.49699 -12.28848 -11.73750 -11.48719 -11.15094 -11.03260 -10.88900 -10.79156 -10.47897 -10.40576 -10.32254 -10.27017 -10.13111 -10.00830 -9.72122 -8.93668 -8.91709 -8.77328 -6.97624 -5.83533 -3.11530 0.26443 1.28307 2.30707 2.40794 2.71642 3.02736 3.38414 3.44876 3.46488 3.99186 4.39890 4.52321 4.65464 4.72805 4.77472 4.81315 4.84349 4.85805 4.96298 5.09728 5.12587 5.27399 5.40491 5.49245 5.51923 5.53702 5.60726 5.66042 5.68711 5.83352 5.93865 5.98911 6.03098 6.17713 6.24625 6.29275 6.35244 6.52826 6.71396 6.84185 6.89218 7.32273 7.54361 7.65033 7.76477 8.35922 9.47425 10.04864 10.39246 11.39441 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.003249 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.548855 B = 8615.121445 C =10040.813652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.117 3.883 5 N -0.588 5.588 6 C 0.599 3.401 7 O -0.504 6.504 8 C 0.033 3.967 9 C -0.238 4.238 10 C 0.481 3.519 11 O -0.526 6.526 12 N -0.456 5.456 13 C 0.104 3.896 14 O 0.002 5.998 15 C 0.094 3.906 16 C -0.126 4.126 17 C -0.090 4.090 18 H 0.074 0.926 19 C 0.158 3.842 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.192 0.808 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -5.020 15.457 16.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.004 4.004 5 N -0.319 5.319 6 C 0.383 3.617 7 O -0.380 6.380 8 C -0.025 4.025 9 C -0.263 4.263 10 C 0.279 3.721 11 O -0.407 6.407 12 N -0.221 5.221 13 C -0.033 4.033 14 O -0.007 6.007 15 C -0.028 4.028 16 C -0.164 4.164 17 C -0.109 4.109 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.377 5.377 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.209 0.791 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.526 -5.193 15.762 16.966 hybrid contribution 0.060 0.075 -1.127 1.131 sum -3.466 -5.118 14.635 15.887 Atomic orbital electron populations 1.21891 0.94780 1.01968 1.01852 1.21506 0.96768 0.99723 0.93885 0.89438 1.21875 1.00202 0.78534 0.99781 1.48095 1.53727 1.12352 1.17751 1.16875 0.78896 0.81829 0.84104 1.90862 1.57999 1.61268 1.27894 1.23451 1.00219 0.93249 0.85557 1.23307 1.06441 0.94175 1.02392 1.18323 0.82569 0.90246 0.80941 1.90963 1.46295 1.34943 1.68503 1.46294 1.55799 1.04963 1.15009 1.22187 1.04624 0.87267 0.89198 1.84295 1.68442 1.14431 1.33485 1.22408 1.01229 0.95030 0.84102 1.21978 1.01555 0.96029 0.96849 1.21339 1.00438 0.94501 0.94629 0.90774 1.20710 0.95957 0.94695 0.85549 1.42380 1.56848 1.37562 1.00868 1.19267 1.23036 1.10790 0.83799 0.91221 1.24716 1.00062 0.98364 0.97816 1.69655 1.35743 1.24422 1.28474 0.86140 0.77442 0.78034 0.84718 1.20579 1.21873 1.21886 0.92737 0.93097 0.91644 0.90573 0.88645 0.79093 0.89927 0.88510 0.87687 0.90103 0.88607 0.91147 0.89025 0.96028 0.96366 0.78329 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.38 37.16 0.31 -1.37 16 2 C -0.10 -1.10 2.72 -90.50 -0.25 -1.34 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.12 1.18 5.81 -3.71 -0.02 1.16 16 5 N -0.59 -6.27 2.41 -173.75 -0.42 -6.69 16 6 C 0.60 7.06 7.71 -12.17 -0.09 6.96 16 7 O -0.50 -7.04 16.34 5.37 0.09 -6.95 16 8 C 0.03 0.37 6.94 -36.18 -0.25 0.11 16 9 C -0.24 -2.71 10.94 -38.70 -0.42 -3.14 16 10 C 0.48 6.13 8.02 -14.66 -0.12 6.01 16 11 O -0.53 -8.29 17.84 4.94 0.09 -8.21 16 12 N -0.46 -4.70 3.68 -69.77 -0.26 -4.96 16 13 C 0.10 0.69 11.22 59.85 0.67 1.36 16 14 O 0.00 0.02 7.44 16.83 0.13 0.15 16 15 C 0.09 0.97 6.34 -3.71 -0.02 0.95 16 16 C -0.13 -1.61 4.90 -26.61 -0.13 -1.74 16 17 C -0.09 -1.22 1.96 -90.58 -0.18 -1.40 16 18 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 19 C 0.16 2.86 5.18 -4.04 -0.02 2.84 16 20 N -0.73 -17.14 5.32 -59.91 -0.32 -17.45 16 21 C -0.24 -6.36 9.99 -15.06 -0.15 -6.51 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 25 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H 0.05 0.66 5.97 -51.93 -0.31 0.35 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.98 7.05 -51.92 -0.37 0.62 16 34 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.93 3.83 -54.62 -0.21 0.72 16 40 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 41 H 0.09 1.37 7.15 -51.92 -0.37 0.99 16 42 H 0.02 0.40 6.74 -51.93 -0.35 0.05 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 9.30 6.84 -40.82 -0.28 9.02 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -33.01 360.44 -6.65 -39.67 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.32 Total: 5.13 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -0.77 Total: 3.43 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.27 Total: -55.35 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.30 Total: -15.01 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.01 -6.65 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184249562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.775 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds