Wall clock time and date at job start Tue Mar 31 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35343 * 116.99869 * 2 1 4 4 N 1.30554 * 125.44446 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38386 * 180.02562 * 4 3 2 6 6 C 1.47364 * 126.41565 * 179.97438 * 5 4 3 7 7 O 1.21614 * 120.00235 * 173.71794 * 6 5 4 8 8 N 1.34779 * 119.99966 * 353.71352 * 6 5 4 9 9 C 1.46933 * 120.62864 * 353.70645 * 8 6 5 10 10 C 1.53195 * 108.77282 * 126.41048 * 9 8 6 11 11 C 1.53042 * 109.34025 * 54.62181 * 10 9 8 12 12 H 1.09002 * 109.45813 * 58.66642 * 11 10 9 13 13 C 1.52999 * 109.46015 * 178.62757 * 11 10 9 14 14 N 1.46495 * 109.46855 * 294.99738 * 13 11 10 15 15 C 1.36943 * 119.99674 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99877 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99802 * 180.02562 * 15 14 13 18 18 N 1.31611 * 120.00241 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99513 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47452 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46979 * 119.99855 * 19 17 15 22 22 H 1.48499 * 109.46916 * 239.99822 * 19 17 15 23 23 C 1.53035 * 109.53776 * 298.68210 * 11 10 9 24 24 H 1.09007 * 109.49786 * 301.35189 * 23 11 10 25 25 C 1.53005 * 109.50050 * 181.28348 * 23 11 10 26 26 C 1.46922 * 120.63287 * 173.72836 * 8 6 5 27 27 C 1.35912 * 107.17409 * 0.23875 * 5 4 3 28 28 O 1.34197 * 125.45125 * 359.97438 * 3 2 1 29 29 H 1.09007 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46935 * 300.00037 * 1 2 3 31 31 H 1.09003 * 109.47084 * 60.00230 * 1 2 3 32 32 H 1.08998 * 109.58576 * 6.62814 * 9 8 6 33 33 H 1.09001 * 109.58524 * 246.19523 * 9 8 6 34 34 H 1.09002 * 109.49163 * 174.58534 * 10 9 8 35 35 H 1.08996 * 109.49869 * 294.64943 * 10 9 8 36 36 H 1.08998 * 109.47029 * 54.99912 * 13 11 10 37 37 H 1.09001 * 109.46978 * 174.99669 * 13 11 10 38 38 H 0.96996 * 120.00564 * 0.02562 * 14 13 11 39 39 H 0.97000 * 120.00096 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.46756 * 300.12804 * 25 23 11 41 41 H 1.09004 * 109.46630 * 60.13026 * 25 23 11 42 42 H 1.09000 * 109.47158 * 180.12722 * 25 23 11 43 43 H 1.08998 * 109.58815 * 353.37265 * 26 8 6 44 44 H 1.09003 * 109.59121 * 113.65949 * 26 8 6 45 45 H 1.08001 * 126.46038 * 179.72659 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2059 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5701 2.7406 0.0009 6 6 4.8892 3.3976 0.0020 7 8 4.9668 4.6058 -0.1130 8 7 6.0095 2.6595 0.1306 9 6 5.9292 1.2188 0.4078 10 6 6.7485 0.4674 -0.6462 11 6 8.1739 1.0240 -0.6716 12 1 8.6242 0.9141 0.3149 13 6 9.0041 0.2525 -1.6995 14 7 9.1398 -1.1416 -1.2702 15 6 9.8474 -2.0283 -2.0373 16 1 10.3050 -1.6999 -2.9589 17 6 9.9756 -3.3494 -1.6308 18 7 9.4176 -3.7497 -0.5081 19 14 10.9403 -4.5591 -2.6776 20 1 11.4634 -3.8647 -3.8814 21 1 12.0739 -5.1031 -1.8875 22 1 10.0498 -5.6714 -3.0961 23 6 8.1381 2.5057 -1.0528 24 1 7.6661 2.6190 -2.0288 25 6 9.5657 3.0532 -1.1092 26 6 7.3344 3.2803 -0.0034 27 6 2.3603 3.3600 0.0060 28 8 1.4227 2.3957 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.8894 0.8952 0.3613 33 1 6.3337 1.0144 1.3991 34 1 6.7765 -0.5933 -0.3969 35 1 6.2890 0.5989 -1.6258 36 1 8.5064 0.2875 -2.6686 37 1 9.9922 0.7052 -1.7820 38 1 8.7286 -1.4366 -0.4428 39 1 9.5075 -4.6727 -0.2239 40 1 10.0374 2.9387 -0.1333 41 1 10.1370 2.5019 -1.8560 42 1 9.5395 4.1091 -1.3784 43 1 7.2219 4.3168 -0.3213 44 1 7.8526 3.2462 0.9550 45 1 2.1849 4.4256 0.0119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184864175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:17 Heat of formation + Delta-G solvation = -19.398758 kcal Electronic energy + Delta-G solvation = -27884.733744 eV Core-core repulsion = 23905.664957 eV Total energy + Delta-G solvation = -3979.068787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.78174 -40.14176 -39.14290 -37.92207 -35.48006 -34.77656 -33.35549 -31.83720 -30.45221 -30.17454 -27.84332 -27.02143 -26.75490 -24.35791 -23.30114 -22.80284 -22.24697 -21.23773 -20.44675 -19.43674 -18.41633 -17.84284 -17.36603 -16.95299 -16.76071 -15.95032 -15.62915 -15.55705 -15.06790 -14.73334 -14.40998 -14.03902 -13.89882 -13.62744 -13.43200 -13.24087 -12.95949 -12.69333 -12.50731 -12.47560 -12.33589 -11.84401 -11.65047 -11.57801 -11.33154 -10.92840 -10.88655 -10.74821 -10.66056 -10.34434 -10.26643 -10.06549 -9.91779 -9.55381 -9.41202 -9.03167 -8.78803 -8.47254 -6.82207 -5.69876 -2.97256 0.84061 1.58429 1.75695 2.41114 2.95600 3.15046 3.47373 3.53014 3.55189 4.11590 4.44575 4.56223 4.59624 4.64741 4.73913 4.93534 5.00159 5.05010 5.15104 5.18761 5.32147 5.39885 5.54829 5.64483 5.66388 5.75737 5.86175 5.92712 6.02186 6.08475 6.13881 6.20986 6.31747 6.40893 6.41954 6.56578 6.64518 6.75307 6.83545 6.96345 7.05988 7.18111 7.46148 7.77016 8.04967 8.49627 9.60637 10.20489 10.55187 11.53270 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.003337 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.280933 B = 8387.604804 C =10435.413295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.241 6.241 3 C 0.384 3.616 4 N -0.447 5.447 5 C -0.039 4.039 6 C 0.600 3.400 7 O -0.545 6.545 8 N -0.585 5.585 9 C 0.063 3.937 10 C -0.117 4.117 11 C -0.091 4.091 12 H 0.070 0.930 13 C 0.157 3.843 14 N -0.731 5.731 15 C -0.235 4.235 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.096 4.096 24 H 0.072 0.928 25 C -0.146 4.146 26 C 0.117 3.883 27 C 0.000 4.000 28 O -0.226 6.226 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.015 0.985 37 H 0.023 0.977 38 H 0.383 0.617 39 H 0.253 0.747 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.674 14.935 3.342 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.148 6.148 3 C 0.139 3.861 4 N -0.193 5.193 5 C -0.158 4.158 6 C 0.387 3.613 7 O -0.424 6.424 8 N -0.315 5.315 9 C -0.059 4.059 10 C -0.156 4.156 11 C -0.110 4.110 12 H 0.089 0.911 13 C 0.030 3.970 14 N -0.376 5.376 15 C -0.366 4.366 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.116 4.116 24 H 0.090 0.910 25 C -0.204 4.204 26 C -0.005 4.005 27 C -0.072 4.072 28 O -0.117 6.117 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.217 0.783 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -18.106 14.751 3.145 23.565 hybrid contribution -0.272 -0.506 -0.290 0.643 sum -18.378 14.245 2.855 23.427 Atomic orbital electron populations 1.23326 0.75071 1.05844 1.02914 1.86446 1.23703 1.15735 1.88951 1.23818 0.85854 0.79500 0.96912 1.70934 1.08533 1.15218 1.24658 1.21714 0.95835 0.88274 1.09958 1.16728 0.81954 0.85612 0.77010 1.90799 1.86418 1.12966 1.52254 1.47972 1.05183 1.10458 1.67884 1.23048 1.06889 0.77608 0.98308 1.21828 0.94271 1.00669 0.98788 1.21380 0.96154 0.93023 1.00459 0.91114 1.20747 0.95852 0.85948 0.94489 1.42391 1.63912 1.04240 1.27030 1.19284 1.24652 0.90107 1.02598 0.91289 1.24712 1.01440 0.97242 0.97704 1.69664 1.49268 1.16452 1.22883 0.86144 0.79340 0.81479 0.79424 1.20636 1.21959 1.21952 1.21455 0.95938 0.95424 0.98806 0.90953 1.21830 0.95705 1.00216 1.02638 1.21776 0.81547 0.97765 0.99385 1.24898 0.84803 0.93738 1.03762 1.84389 1.39531 1.15874 1.71916 0.86161 0.91406 0.91376 0.83574 0.91999 0.89517 0.92075 0.96667 0.95943 0.78265 0.93666 0.92501 0.91308 0.93049 0.89273 0.91259 0.74805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.73 101.05 1.08 1.19 16 2 O -0.24 -2.35 10.55 -40.95 -0.43 -2.78 16 3 C 0.38 4.29 8.98 52.22 0.47 4.76 16 4 N -0.45 -5.99 7.78 -11.72 -0.09 -6.08 16 5 C -0.04 -0.50 6.72 -82.99 -0.56 -1.06 16 6 C 0.60 8.73 7.68 -12.55 -0.10 8.63 16 7 O -0.55 -8.72 16.34 5.27 0.09 -8.64 16 8 N -0.59 -8.45 2.97 -174.05 -0.52 -8.96 16 9 C 0.06 0.94 6.33 -3.71 -0.02 0.91 16 10 C -0.12 -1.98 5.25 -26.61 -0.14 -2.12 16 11 C -0.09 -1.54 1.73 -90.58 -0.16 -1.69 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 13 C 0.16 3.24 5.41 -4.04 -0.02 3.22 16 14 N -0.73 -18.82 5.32 -59.91 -0.32 -19.14 16 15 C -0.24 -6.71 9.99 -15.05 -0.15 -6.86 16 16 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 19 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 C -0.10 -1.37 2.41 -90.50 -0.22 -1.58 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 25 C -0.15 -1.87 8.82 37.16 0.33 -1.54 16 26 C 0.12 1.58 5.70 -3.71 -0.02 1.56 16 27 C 0.00 0.00 11.94 29.90 0.36 0.36 16 28 O -0.23 -2.10 10.20 -17.76 -0.18 -2.28 16 29 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.15 2.21 3.66 -77.04 -0.28 1.92 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.65 7.15 -51.93 -0.37 1.28 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 38 H 0.38 10.30 6.85 -40.82 -0.28 10.02 16 39 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.94 6.30 -51.93 -0.33 0.62 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.20 7.05 -51.93 -0.37 0.83 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.24 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -34.18 365.18 -6.06 -40.24 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.56 Total: 6.97 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 0.76 Total: 5.25 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.20 Total: -62.01 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.53 Total: -13.70 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.18 -6.06 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184864175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.837 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds