Wall clock time and date at job start Tue Mar 31 2020 14:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35343 * 116.99869 * 2 1 4 4 N 1.30554 * 125.44446 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38386 * 180.02562 * 4 3 2 6 6 C 1.47364 * 126.41565 * 179.97438 * 5 4 3 7 7 O 1.21614 * 120.00235 * 173.71794 * 6 5 4 8 8 N 1.34779 * 119.99966 * 353.71352 * 6 5 4 9 9 C 1.46933 * 120.62864 * 353.70645 * 8 6 5 10 10 C 1.53195 * 108.77282 * 126.41048 * 9 8 6 11 11 C 1.53042 * 109.34025 * 54.62181 * 10 9 8 12 12 H 1.09002 * 109.45813 * 58.66642 * 11 10 9 13 13 C 1.52999 * 109.46015 * 178.62757 * 11 10 9 14 14 N 1.46495 * 109.46855 * 294.99738 * 13 11 10 15 15 C 1.36943 * 119.99674 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99877 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99802 * 180.02562 * 15 14 13 18 18 N 1.31611 * 120.00241 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99513 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47452 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46979 * 119.99855 * 19 17 15 22 22 H 1.48499 * 109.46916 * 239.99822 * 19 17 15 23 23 C 1.53035 * 109.53776 * 298.68210 * 11 10 9 24 24 H 1.09007 * 109.49786 * 301.35189 * 23 11 10 25 25 C 1.53005 * 109.50050 * 181.28348 * 23 11 10 26 26 C 1.46922 * 120.63287 * 173.72836 * 8 6 5 27 27 C 1.35912 * 107.17409 * 0.23875 * 5 4 3 28 28 O 1.34197 * 125.45125 * 359.97438 * 3 2 1 29 29 H 1.09007 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46935 * 300.00037 * 1 2 3 31 31 H 1.09003 * 109.47084 * 60.00230 * 1 2 3 32 32 H 1.08998 * 109.58576 * 6.62814 * 9 8 6 33 33 H 1.09001 * 109.58524 * 246.19523 * 9 8 6 34 34 H 1.09002 * 109.49163 * 174.58534 * 10 9 8 35 35 H 1.08996 * 109.49869 * 294.64943 * 10 9 8 36 36 H 1.08998 * 109.47029 * 54.99912 * 13 11 10 37 37 H 1.09001 * 109.46978 * 174.99669 * 13 11 10 38 38 H 0.96996 * 120.00564 * 0.02562 * 14 13 11 39 39 H 0.97000 * 120.00096 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.46756 * 300.12804 * 25 23 11 41 41 H 1.09004 * 109.46630 * 60.13026 * 25 23 11 42 42 H 1.09000 * 109.47158 * 180.12722 * 25 23 11 43 43 H 1.08998 * 109.58815 * 353.37265 * 26 8 6 44 44 H 1.09003 * 109.59121 * 113.65949 * 26 8 6 45 45 H 1.08001 * 126.46038 * 179.72659 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2059 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5701 2.7406 0.0009 6 6 4.8892 3.3976 0.0020 7 8 4.9668 4.6058 -0.1130 8 7 6.0095 2.6595 0.1306 9 6 5.9292 1.2188 0.4078 10 6 6.7485 0.4674 -0.6462 11 6 8.1739 1.0240 -0.6716 12 1 8.6242 0.9141 0.3149 13 6 9.0041 0.2525 -1.6995 14 7 9.1398 -1.1416 -1.2702 15 6 9.8474 -2.0283 -2.0373 16 1 10.3050 -1.6999 -2.9589 17 6 9.9756 -3.3494 -1.6308 18 7 9.4176 -3.7497 -0.5081 19 14 10.9403 -4.5591 -2.6776 20 1 11.4634 -3.8647 -3.8814 21 1 12.0739 -5.1031 -1.8875 22 1 10.0498 -5.6714 -3.0961 23 6 8.1381 2.5057 -1.0528 24 1 7.6661 2.6190 -2.0288 25 6 9.5657 3.0532 -1.1092 26 6 7.3344 3.2803 -0.0034 27 6 2.3603 3.3600 0.0060 28 8 1.4227 2.3957 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.8894 0.8952 0.3613 33 1 6.3337 1.0144 1.3991 34 1 6.7765 -0.5933 -0.3969 35 1 6.2890 0.5989 -1.6258 36 1 8.5064 0.2875 -2.6686 37 1 9.9922 0.7052 -1.7820 38 1 8.7286 -1.4366 -0.4428 39 1 9.5075 -4.6727 -0.2239 40 1 10.0374 2.9387 -0.1333 41 1 10.1370 2.5019 -1.8560 42 1 9.5395 4.1091 -1.3784 43 1 7.2219 4.3168 -0.3213 44 1 7.8526 3.2462 0.9550 45 1 2.1849 4.4256 0.0119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184864175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:16 Heat of formation + Delta-G solvation = -44.451108 kcal Electronic energy + Delta-G solvation = -27885.820096 eV Core-core repulsion = 23905.664957 eV Total energy + Delta-G solvation = -3980.155138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.59801 -41.28457 -39.83493 -39.18543 -36.64945 -36.19571 -34.81507 -33.40107 -31.99222 -31.23921 -28.44296 -28.28802 -28.03094 -25.81130 -24.80425 -23.64604 -23.54615 -22.64783 -21.46763 -20.68834 -19.34570 -19.13621 -18.61615 -18.28949 -17.47690 -17.08323 -16.72161 -16.41281 -16.29650 -15.95684 -15.74195 -15.52638 -15.25669 -15.14961 -14.60291 -14.46479 -14.25325 -14.00876 -14.00595 -13.10518 -13.09169 -12.99760 -12.93897 -12.91693 -12.79893 -12.71891 -12.14265 -12.11461 -12.02858 -11.88783 -11.82962 -11.62463 -11.48104 -11.16970 -10.94807 -10.54110 -9.89508 -9.59615 -8.95080 -7.92803 -5.20914 0.01179 0.83974 0.86092 1.47652 1.48550 1.58660 1.67598 1.96150 2.12789 2.57411 3.16544 3.40418 3.68370 3.73553 3.79690 3.90191 4.01977 4.08524 4.19992 4.25636 4.26850 4.29642 4.36825 4.50671 4.54448 4.62410 4.65616 4.67237 4.71119 4.78621 4.82939 5.00822 5.08917 5.14810 5.18002 5.25200 5.31919 5.39316 5.48934 5.54575 5.59975 5.80831 6.23355 6.29838 6.45652 6.96199 7.35970 8.12757 8.36934 9.30996 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.003337 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.280933 B = 8387.604804 C =10435.413295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.259 6.259 3 C 0.386 3.614 4 N -0.482 5.482 5 C -0.078 4.078 6 C 0.600 3.400 7 O -0.563 6.563 8 N -0.590 5.590 9 C 0.073 3.927 10 C -0.108 4.108 11 C -0.081 4.081 12 H 0.066 0.934 13 C 0.158 3.842 14 N -0.743 5.743 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.972 3.028 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.293 1.293 23 C -0.087 4.087 24 H 0.065 0.935 25 C -0.142 4.142 26 C 0.120 3.880 27 C 0.036 3.964 28 O -0.212 6.212 29 H 0.142 0.858 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.008 0.992 37 H 0.029 0.971 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.624 16.293 3.075 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.167 6.167 3 C 0.140 3.860 4 N -0.229 5.229 5 C -0.195 4.195 6 C 0.389 3.611 7 O -0.444 6.444 8 N -0.320 5.320 9 C -0.049 4.049 10 C -0.147 4.147 11 C -0.099 4.099 12 H 0.085 0.915 13 C 0.032 3.968 14 N -0.385 5.385 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.801 3.199 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.220 1.220 23 C -0.107 4.107 24 H 0.084 0.916 25 C -0.200 4.200 26 C -0.002 4.002 27 C -0.037 4.037 28 O -0.103 6.103 29 H 0.160 0.840 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.167 0.833 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.047 0.953 38 H 0.207 0.793 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -19.064 16.140 2.857 25.142 hybrid contribution -0.100 -0.894 -0.229 0.929 sum -19.164 15.246 2.628 24.629 Atomic orbital electron populations 1.23710 0.72546 1.07685 1.04054 1.86456 1.26286 1.15180 1.88745 1.23752 0.85633 0.80278 0.96303 1.70692 1.10124 1.15956 1.26117 1.21564 0.96028 0.88511 1.13428 1.16928 0.82509 0.85447 0.76228 1.90775 1.86843 1.13531 1.53215 1.48002 1.05764 1.10084 1.68118 1.22901 1.06696 0.77876 0.97418 1.21675 0.94752 0.99341 0.98906 1.21266 0.95192 0.94508 0.98982 0.91514 1.20877 0.96738 0.84057 0.95156 1.42581 1.63507 1.05948 1.26504 1.19663 1.24303 0.90878 1.02793 0.90970 1.25534 1.02962 0.99051 0.99108 1.69819 1.50877 1.16598 1.24587 0.85091 0.77702 0.78918 0.78163 1.19216 1.21896 1.22023 1.21360 0.97248 0.93344 0.98720 0.91630 1.21794 0.94215 1.01361 1.02606 1.21801 0.81170 0.97666 0.99586 1.25576 0.83614 0.94780 0.99699 1.84437 1.39022 1.15394 1.71473 0.84050 0.90110 0.90362 0.83344 0.91699 0.92336 0.93209 0.97394 0.95275 0.79320 0.94017 0.92005 0.92489 0.90758 0.88688 0.90105 0.71307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.73 113.37 1.22 1.32 16 2 O -0.26 -4.84 10.55 -64.11 -0.68 -5.52 16 3 C 0.39 8.27 8.98 130.43 1.17 9.44 16 4 N -0.48 -12.82 7.78 -419.41 -3.26 -16.08 16 5 C -0.08 -1.91 6.72 40.31 0.27 -1.64 16 6 C 0.60 16.97 7.68 86.64 0.67 17.63 16 7 O -0.56 -17.24 16.34 -4.07 -0.07 -17.31 16 8 N -0.59 -16.76 2.97 -822.82 -2.45 -19.20 16 9 C 0.07 2.21 6.33 86.36 0.55 2.75 16 10 C -0.11 -3.78 5.25 30.67 0.16 -3.62 16 11 C -0.08 -2.74 1.73 -10.77 -0.02 -2.76 16 12 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 13 C 0.16 6.62 5.41 86.38 0.47 7.09 16 14 N -0.74 -39.09 5.32 -343.45 -1.83 -40.92 16 15 C -0.24 -14.10 9.99 84.03 0.84 -13.26 16 16 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 18 N -0.97 -60.28 13.06 21.65 0.28 -59.99 16 19 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 23 C -0.09 -2.40 2.41 -10.71 -0.03 -2.42 16 24 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 25 C -0.14 -3.41 8.82 71.98 0.63 -2.77 16 26 C 0.12 3.07 5.70 86.37 0.49 3.57 16 27 C 0.04 0.59 11.94 67.28 0.80 1.40 16 28 O -0.21 -3.50 10.20 18.87 0.19 -3.30 16 29 H 0.14 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.15 4.59 3.66 -51.96 -0.19 4.40 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.36 7.15 -2.39 -0.02 2.35 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.03 1.21 6.14 -2.39 -0.01 1.19 16 38 H 0.37 20.83 6.85 -92.71 -0.63 20.19 16 39 H 0.25 15.08 8.31 -92.71 -0.77 14.30 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.50 6.30 -2.39 -0.02 1.49 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 2.39 7.05 -2.39 -0.02 2.37 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 45 H 0.27 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -74.04 365.18 2.12 -71.92 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.20 Total: 28.44 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 7.69 Total: 12.82 kcal Atomic # 7 Polarization: -128.94 SS G_CDS: -7.25 Total: -136.19 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.55 Total: -26.13 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -74.04 2.12 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184864175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.473 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds