Wall clock time and date at job start Tue Mar 31 2020 14:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35347 * 117.00005 * 2 1 4 4 N 1.30557 * 125.44785 * 180.30703 * 3 2 1 5 5 C 1.36321 * 108.38383 * 180.20580 * 4 3 2 6 6 C 1.47371 * 126.41337 * 179.82870 * 5 4 3 7 7 O 1.21614 * 120.00393 * 185.90798 * 6 5 4 8 8 N 1.34780 * 119.99674 * 6.17585 * 6 5 4 9 9 C 1.46927 * 120.63410 * 354.46087 * 8 6 5 10 10 C 1.53187 * 108.77896 * 126.36355 * 9 8 6 11 11 C 1.53042 * 109.31069 * 54.63464 * 10 9 8 12 12 H 1.08997 * 109.45906 * 58.64681 * 11 10 9 13 13 C 1.53005 * 109.45733 * 178.61586 * 11 10 9 14 14 N 1.46499 * 109.46772 * 294.99943 * 13 11 10 15 15 C 1.36947 * 119.99527 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00056 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99554 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00334 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99612 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47075 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46709 * 119.99933 * 19 17 15 22 22 H 1.48503 * 109.46906 * 239.99793 * 19 17 15 23 23 C 1.53038 * 109.53799 * 298.63217 * 11 10 9 24 24 H 1.09008 * 109.49626 * 181.31286 * 23 11 10 25 25 C 1.53000 * 109.50259 * 301.38188 * 23 11 10 26 26 C 1.46927 * 120.63055 * 174.17600 * 8 6 5 27 27 C 1.35912 * 107.17755 * 359.56015 * 5 4 3 28 28 O 1.34206 * 125.45098 * 0.03533 * 3 2 1 29 29 H 1.09003 * 109.46943 * 59.99159 * 1 2 3 30 30 H 1.08999 * 109.47392 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46590 * 299.99618 * 1 2 3 32 32 H 1.08994 * 109.58611 * 246.15699 * 9 8 6 33 33 H 1.09000 * 109.58095 * 6.57652 * 9 8 6 34 34 H 1.08999 * 109.49945 * 174.58661 * 10 9 8 35 35 H 1.09004 * 109.49937 * 294.65655 * 10 9 8 36 36 H 1.08997 * 109.47160 * 55.00291 * 13 11 10 37 37 H 1.08998 * 109.46814 * 175.00410 * 13 11 10 38 38 H 0.96997 * 120.00290 * 0.02562 * 14 13 11 39 39 H 0.97000 * 119.99712 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.46863 * 59.99790 * 25 23 11 41 41 H 1.08992 * 109.46996 * 180.02562 * 25 23 11 42 42 H 1.08998 * 109.46947 * 300.00294 * 25 23 11 43 43 H 1.09005 * 109.58282 * 353.42110 * 26 8 6 44 44 H 1.08996 * 109.58929 * 113.84183 * 26 8 6 45 45 H 1.08001 * 126.46170 * 180.28395 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 7 3.3349 1.3978 -0.0057 5 6 3.5702 2.7405 0.0011 6 6 4.8893 3.3975 0.0016 7 8 4.9669 4.6057 0.1164 8 7 6.0095 2.6599 -0.1307 9 6 5.9412 1.1924 -0.1547 10 6 6.6516 0.6861 -1.4138 11 6 8.0739 1.2498 -1.4536 12 1 8.6122 0.9406 -0.5577 13 6 8.7982 0.7185 -2.6923 14 7 8.9595 -0.7331 -2.5785 15 6 9.5847 -1.4328 -3.5760 16 1 9.9591 -0.9144 -4.4463 17 6 9.7370 -2.8083 -3.4685 18 7 9.2810 -3.4400 -2.4076 19 14 10.5891 -3.7628 -4.8295 20 1 11.0056 -2.8269 -5.9045 21 1 11.7855 -4.4488 -4.2786 22 1 9.6530 -4.7717 -5.3874 23 6 8.0174 2.7780 -1.5124 24 1 9.0301 3.1778 -1.5643 25 6 7.2326 3.2128 -2.7518 26 6 7.3218 3.3080 -0.2599 27 6 2.3604 3.3600 0.0012 28 8 1.4228 2.3958 0.0007 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 6.4338 0.7892 0.7300 33 1 4.8984 0.8755 -0.1711 34 1 6.6923 -0.4030 -1.3956 35 1 6.1046 1.0151 -2.2974 36 1 8.2136 0.9506 -3.5825 37 1 9.7789 1.1881 -2.7690 38 1 8.6235 -1.1986 -1.7967 39 1 9.3879 -4.4012 -2.3324 40 1 6.2197 2.8137 -2.6989 41 1 7.1930 4.3012 -2.7934 42 1 7.7264 2.8330 -3.6462 43 1 7.1896 4.3866 -0.3458 44 1 7.9294 3.0809 0.6161 45 1 2.1850 4.4256 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184864177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:20 Heat of formation + Delta-G solvation = -16.165061 kcal Electronic energy + Delta-G solvation = -28116.007405 eV Core-core repulsion = 24137.078842 eV Total energy + Delta-G solvation = -3978.928563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.78419 -40.25753 -39.15741 -37.98609 -35.47024 -34.76764 -33.17399 -31.63637 -30.41656 -30.19695 -27.84797 -27.06895 -26.83252 -24.35273 -23.28236 -23.13500 -22.51377 -21.32648 -20.49241 -18.86488 -18.13893 -17.83110 -17.50516 -16.87117 -16.75906 -15.83599 -15.62290 -15.59385 -15.22309 -14.83623 -14.39572 -13.93943 -13.83877 -13.71314 -13.57673 -13.42070 -12.82854 -12.72215 -12.59264 -12.36324 -12.33942 -12.13020 -11.50069 -11.39963 -11.31515 -10.98515 -10.85415 -10.71846 -10.65241 -10.32058 -10.22720 -10.06154 -9.91552 -9.56621 -9.35480 -9.03567 -8.79570 -8.45398 -6.83097 -5.70379 -2.97921 0.84587 1.57900 1.76319 2.41076 2.94871 3.18090 3.46934 3.52562 3.54769 4.11960 4.44344 4.55828 4.59710 4.64344 4.73571 4.93361 5.01327 5.09124 5.12693 5.16956 5.32457 5.43028 5.51087 5.63564 5.77969 5.79409 5.83329 5.90842 5.98867 6.09511 6.20460 6.21195 6.31208 6.38918 6.47782 6.53722 6.64140 6.77735 6.82690 6.96548 7.06155 7.17923 7.47792 7.76461 8.06768 8.49119 9.60110 10.19883 10.54557 11.52713 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.003310 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.998646 B = 8458.297548 C =10183.576670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.241 6.241 3 C 0.384 3.616 4 N -0.448 5.448 5 C -0.039 4.039 6 C 0.600 3.400 7 O -0.546 6.546 8 N -0.581 5.581 9 C 0.060 3.940 10 C -0.121 4.121 11 C -0.091 4.091 12 H 0.070 0.930 13 C 0.159 3.841 14 N -0.732 5.732 15 C -0.235 4.235 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.098 4.098 24 H 0.082 0.918 25 C -0.145 4.145 26 C 0.116 3.884 27 C 0.000 4.000 28 O -0.225 6.225 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.151 0.849 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.016 0.984 38 H 0.384 0.616 39 H 0.253 0.747 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.848 13.739 7.303 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.149 6.149 3 C 0.139 3.861 4 N -0.194 5.194 5 C -0.157 4.157 6 C 0.387 3.613 7 O -0.425 6.425 8 N -0.311 5.311 9 C -0.062 4.062 10 C -0.159 4.159 11 C -0.110 4.110 12 H 0.089 0.911 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.367 4.367 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.118 4.118 24 H 0.100 0.900 25 C -0.203 4.203 26 C -0.006 4.006 27 C -0.072 4.072 28 O -0.117 6.117 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.167 0.833 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.218 0.782 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -18.291 13.587 7.199 23.896 hybrid contribution -0.245 -0.420 -0.520 0.712 sum -18.536 13.167 6.678 23.697 Atomic orbital electron populations 1.23327 0.75059 1.05841 1.02932 1.86442 1.23719 1.15766 1.88950 1.23848 0.85875 0.79495 0.96835 1.70887 1.08465 1.15218 1.24858 1.21728 0.95884 0.88238 1.09855 1.16713 0.81894 0.85599 0.77128 1.90798 1.86404 1.13131 1.52128 1.47930 1.05826 1.08247 1.69121 1.23127 1.07489 0.77135 0.98402 1.21897 0.95041 1.01893 0.97076 1.21345 0.96484 0.93089 1.00074 0.91140 1.20708 0.95867 0.86127 0.94153 1.42400 1.70254 1.01101 1.23851 1.19281 1.28948 0.89847 0.98594 0.91293 1.24716 1.01936 0.96543 0.97903 1.69669 1.51849 1.08166 1.28566 0.86144 0.78880 0.80038 0.81324 1.20636 1.21948 1.21947 1.21396 0.99389 0.96418 0.94548 0.89978 1.21870 1.00568 1.00057 0.97757 1.21669 0.82537 0.98404 0.97972 1.24887 0.84789 0.93736 1.03827 1.84388 1.39528 1.15865 1.71891 0.91355 0.86165 0.91408 0.91842 0.83270 0.89643 0.91811 0.96188 0.96641 0.78249 0.93658 0.92631 0.93391 0.91938 0.89191 0.91307 0.74817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.73 101.05 1.08 1.19 16 2 O -0.24 -2.32 10.55 -40.96 -0.43 -2.75 16 3 C 0.38 4.25 8.98 52.22 0.47 4.72 16 4 N -0.45 -5.91 7.71 -11.72 -0.09 -6.00 16 5 C -0.04 -0.49 6.75 -82.99 -0.56 -1.05 16 6 C 0.60 8.60 7.68 -12.54 -0.10 8.50 16 7 O -0.55 -8.62 16.33 5.27 0.09 -8.54 16 8 N -0.58 -8.23 2.42 -174.32 -0.42 -8.65 16 9 C 0.06 0.88 6.33 -3.71 -0.02 0.86 16 10 C -0.12 -2.00 4.90 -26.61 -0.13 -2.13 16 11 C -0.09 -1.52 1.96 -90.58 -0.18 -1.69 16 12 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 13 C 0.16 3.27 5.18 -4.04 -0.02 3.25 16 14 N -0.73 -18.80 5.32 -59.91 -0.32 -19.12 16 15 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 19 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 C -0.10 -1.36 2.71 -90.72 -0.25 -1.61 16 24 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 25 C -0.15 -2.02 8.38 37.16 0.31 -1.71 16 26 C 0.12 1.54 5.77 -3.93 -0.02 1.52 16 27 C 0.00 0.00 11.94 29.90 0.36 0.35 16 28 O -0.23 -2.09 10.20 -17.76 -0.18 -2.27 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.15 2.24 3.60 -80.94 -0.29 1.95 16 34 H 0.09 1.62 7.15 -51.93 -0.37 1.25 16 35 H 0.06 1.09 6.34 -51.93 -0.33 0.76 16 36 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.38 10.29 6.85 -40.82 -0.28 10.01 16 39 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.05 0.82 5.98 -51.93 -0.31 0.51 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 43 H 0.09 1.19 7.04 -51.93 -0.37 0.82 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.24 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -34.04 361.02 -5.93 -39.97 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.41 Total: 7.18 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 0.70 Total: 4.80 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -0.11 Total: -61.56 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.53 Total: -13.56 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.04 -5.93 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184864177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.809 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds