Wall clock time and date at job start Tue Mar 31 2020 14:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35347 * 117.00005 * 2 1 4 4 N 1.30557 * 125.44785 * 180.30703 * 3 2 1 5 5 C 1.36321 * 108.38383 * 180.20580 * 4 3 2 6 6 C 1.47371 * 126.41337 * 179.82870 * 5 4 3 7 7 O 1.21614 * 120.00393 * 185.90798 * 6 5 4 8 8 N 1.34780 * 119.99674 * 6.17585 * 6 5 4 9 9 C 1.46927 * 120.63410 * 354.46087 * 8 6 5 10 10 C 1.53187 * 108.77896 * 126.36355 * 9 8 6 11 11 C 1.53042 * 109.31069 * 54.63464 * 10 9 8 12 12 H 1.08997 * 109.45906 * 58.64681 * 11 10 9 13 13 C 1.53005 * 109.45733 * 178.61586 * 11 10 9 14 14 N 1.46499 * 109.46772 * 294.99943 * 13 11 10 15 15 C 1.36947 * 119.99527 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00056 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99554 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00334 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99612 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47075 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46709 * 119.99933 * 19 17 15 22 22 H 1.48503 * 109.46906 * 239.99793 * 19 17 15 23 23 C 1.53038 * 109.53799 * 298.63217 * 11 10 9 24 24 H 1.09008 * 109.49626 * 181.31286 * 23 11 10 25 25 C 1.53000 * 109.50259 * 301.38188 * 23 11 10 26 26 C 1.46927 * 120.63055 * 174.17600 * 8 6 5 27 27 C 1.35912 * 107.17755 * 359.56015 * 5 4 3 28 28 O 1.34206 * 125.45098 * 0.03533 * 3 2 1 29 29 H 1.09003 * 109.46943 * 59.99159 * 1 2 3 30 30 H 1.08999 * 109.47392 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46590 * 299.99618 * 1 2 3 32 32 H 1.08994 * 109.58611 * 246.15699 * 9 8 6 33 33 H 1.09000 * 109.58095 * 6.57652 * 9 8 6 34 34 H 1.08999 * 109.49945 * 174.58661 * 10 9 8 35 35 H 1.09004 * 109.49937 * 294.65655 * 10 9 8 36 36 H 1.08997 * 109.47160 * 55.00291 * 13 11 10 37 37 H 1.08998 * 109.46814 * 175.00410 * 13 11 10 38 38 H 0.96997 * 120.00290 * 0.02562 * 14 13 11 39 39 H 0.97000 * 119.99712 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.46863 * 59.99790 * 25 23 11 41 41 H 1.08992 * 109.46996 * 180.02562 * 25 23 11 42 42 H 1.08998 * 109.46947 * 300.00294 * 25 23 11 43 43 H 1.09005 * 109.58282 * 353.42110 * 26 8 6 44 44 H 1.08996 * 109.58929 * 113.84183 * 26 8 6 45 45 H 1.08001 * 126.46170 * 180.28395 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 7 3.3349 1.3978 -0.0057 5 6 3.5702 2.7405 0.0011 6 6 4.8893 3.3975 0.0016 7 8 4.9669 4.6057 0.1164 8 7 6.0095 2.6599 -0.1307 9 6 5.9412 1.1924 -0.1547 10 6 6.6516 0.6861 -1.4138 11 6 8.0739 1.2498 -1.4536 12 1 8.6122 0.9406 -0.5577 13 6 8.7982 0.7185 -2.6923 14 7 8.9595 -0.7331 -2.5785 15 6 9.5847 -1.4328 -3.5760 16 1 9.9591 -0.9144 -4.4463 17 6 9.7370 -2.8083 -3.4685 18 7 9.2810 -3.4400 -2.4076 19 14 10.5891 -3.7628 -4.8295 20 1 11.0056 -2.8269 -5.9045 21 1 11.7855 -4.4488 -4.2786 22 1 9.6530 -4.7717 -5.3874 23 6 8.0174 2.7780 -1.5124 24 1 9.0301 3.1778 -1.5643 25 6 7.2326 3.2128 -2.7518 26 6 7.3218 3.3080 -0.2599 27 6 2.3604 3.3600 0.0012 28 8 1.4228 2.3958 0.0007 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 6.4338 0.7892 0.7300 33 1 4.8984 0.8755 -0.1711 34 1 6.6923 -0.4030 -1.3956 35 1 6.1046 1.0151 -2.2974 36 1 8.2136 0.9506 -3.5825 37 1 9.7789 1.1881 -2.7690 38 1 8.6235 -1.1986 -1.7967 39 1 9.3879 -4.4012 -2.3324 40 1 6.2197 2.8137 -2.6989 41 1 7.1930 4.3012 -2.7934 42 1 7.7264 2.8330 -3.6462 43 1 7.1896 4.3866 -0.3458 44 1 7.9294 3.0809 0.6161 45 1 2.1850 4.4256 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184864177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:19 Heat of formation + Delta-G solvation = -40.758902 kcal Electronic energy + Delta-G solvation = -28117.073874 eV Core-core repulsion = 24137.078842 eV Total energy + Delta-G solvation = -3979.995032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.59230 -41.39563 -39.84044 -39.21497 -36.62887 -36.20347 -34.66580 -33.17404 -31.93617 -31.21452 -28.49385 -28.30459 -28.12890 -25.78775 -24.78854 -24.23836 -23.53642 -22.73081 -21.49576 -19.95914 -19.37661 -18.95997 -18.59147 -18.33120 -17.47384 -16.93388 -16.78984 -16.47698 -16.33752 -15.98725 -15.76506 -15.49299 -15.32485 -15.02508 -14.76001 -14.50426 -14.38229 -14.08018 -13.65997 -13.55342 -13.08878 -12.98538 -12.97099 -12.86718 -12.66663 -12.58352 -12.16741 -12.11142 -12.00636 -11.90147 -11.78558 -11.51573 -11.44204 -11.21612 -10.92482 -10.48230 -9.88929 -9.55671 -8.95382 -7.92830 -5.20999 0.02575 0.84424 0.87845 1.47592 1.48441 1.58575 1.68859 1.96517 2.16805 2.57371 3.18204 3.40463 3.72697 3.74426 3.80374 3.87191 4.03624 4.15450 4.20273 4.25709 4.28113 4.29808 4.36269 4.48705 4.52818 4.62846 4.65809 4.69392 4.75003 4.80375 4.86319 4.99957 5.05116 5.19967 5.20822 5.23444 5.26622 5.36566 5.50280 5.55441 5.61359 5.85011 6.25914 6.29878 6.46945 6.99556 7.35948 8.13062 8.36839 9.30944 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.003310 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.998646 B = 8458.297548 C =10183.576670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.259 6.259 3 C 0.385 3.615 4 N -0.481 5.481 5 C -0.077 4.077 6 C 0.601 3.399 7 O -0.563 6.563 8 N -0.584 5.584 9 C 0.070 3.930 10 C -0.111 4.111 11 C -0.081 4.081 12 H 0.064 0.936 13 C 0.160 3.840 14 N -0.743 5.743 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.075 4.075 18 N -0.968 5.968 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.293 1.293 23 C -0.090 4.090 24 H 0.098 0.902 25 C -0.140 4.140 26 C 0.118 3.882 27 C 0.033 3.967 28 O -0.213 6.213 29 H 0.077 0.923 30 H 0.142 0.858 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.153 0.847 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 15.145 7.085 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.166 6.166 3 C 0.140 3.860 4 N -0.228 5.228 5 C -0.194 4.194 6 C 0.389 3.611 7 O -0.444 6.444 8 N -0.314 5.314 9 C -0.052 4.052 10 C -0.149 4.149 11 C -0.100 4.100 12 H 0.083 0.917 13 C 0.034 3.966 14 N -0.386 5.386 15 C -0.376 4.376 16 H 0.091 0.909 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.801 3.199 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.109 4.109 24 H 0.116 0.884 25 C -0.197 4.197 26 C -0.004 4.004 27 C -0.039 4.039 28 O -0.103 6.103 29 H 0.096 0.904 30 H 0.160 0.840 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.169 0.831 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.207 0.793 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -19.317 15.028 6.967 25.447 hybrid contribution -0.046 -0.820 -0.453 0.937 sum -19.363 14.208 6.515 24.885 Atomic orbital electron populations 1.23709 0.72568 1.07690 1.04030 1.86453 1.26263 1.15184 1.88740 1.23791 0.85672 0.80264 0.96251 1.70639 1.10001 1.15900 1.26256 1.21594 0.96094 0.88492 1.13201 1.16894 0.82408 0.85418 0.76376 1.90776 1.86809 1.13681 1.53110 1.47936 1.06373 1.07798 1.69318 1.22976 1.07431 0.77729 0.97068 1.21734 0.95274 0.99947 0.97956 1.21230 0.95743 0.95174 0.97821 0.91710 1.20837 0.96282 0.83546 0.95957 1.42600 1.69935 1.03091 1.22991 1.19663 1.28386 0.90434 0.99107 0.90941 1.25539 1.03263 0.97575 1.00330 1.69825 1.53440 1.08130 1.30515 0.85092 0.77472 0.78504 0.78812 1.19188 1.21958 1.22007 1.21350 1.00513 0.93912 0.95159 0.88420 1.21808 0.99620 1.01019 0.97255 1.21705 0.82283 0.98565 0.97856 1.25553 0.83658 0.94767 0.99938 1.84434 1.39037 1.15407 1.71469 0.90428 0.84020 0.90109 0.91882 0.83070 0.92632 0.92519 0.96363 0.96418 0.79331 0.94033 0.93860 0.91734 0.92737 0.88578 0.90247 0.71413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.73 113.37 1.22 1.32 16 2 O -0.26 -4.76 10.55 -64.15 -0.68 -5.43 16 3 C 0.39 8.17 8.98 130.43 1.17 9.34 16 4 N -0.48 -12.57 7.71 -419.39 -3.23 -15.80 16 5 C -0.08 -1.85 6.75 40.31 0.27 -1.58 16 6 C 0.60 16.66 7.68 86.65 0.67 17.33 16 7 O -0.56 -16.97 16.33 -4.07 -0.07 -17.04 16 8 N -0.58 -16.20 2.42 -823.67 -1.99 -18.20 16 9 C 0.07 2.09 6.33 86.36 0.55 2.64 16 10 C -0.11 -3.78 4.90 30.67 0.15 -3.63 16 11 C -0.08 -2.70 1.96 -10.77 -0.02 -2.72 16 12 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 13 C 0.16 6.62 5.18 86.38 0.45 7.07 16 14 N -0.74 -38.94 5.32 -343.44 -1.83 -40.76 16 15 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 16 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 17 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 18 N -0.97 -60.27 13.06 21.65 0.28 -59.98 16 19 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 C -0.09 -2.39 2.71 -10.86 -0.03 -2.42 16 24 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 25 C -0.14 -3.73 8.38 71.98 0.60 -3.13 16 26 C 0.12 2.96 5.77 86.22 0.50 3.45 16 27 C 0.03 0.55 11.94 67.28 0.80 1.35 16 28 O -0.21 -3.50 10.20 18.88 0.19 -3.30 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.15 4.64 3.60 -59.66 -0.21 4.42 16 34 H 0.06 2.22 7.15 -2.39 -0.02 2.20 16 35 H 0.06 1.99 6.34 -2.38 -0.02 1.97 16 36 H 0.02 0.78 6.74 -2.39 -0.02 0.76 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.37 20.77 6.85 -92.71 -0.63 20.13 16 39 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.04 1.26 5.98 -2.39 -0.01 1.24 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.52 6.58 -2.39 -0.02 1.51 16 43 H 0.10 2.36 7.04 -2.38 -0.02 2.34 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.27 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -73.50 361.02 2.52 -70.98 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.18 Total: 28.56 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 7.63 Total: 11.92 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -6.77 Total: -134.75 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.55 Total: -25.78 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -73.50 2.52 -70.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184864177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.225 kcal (2) G-P(sol) polarization free energy of solvation -73.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds