Wall clock time and date at job start Tue Mar 31 2020 14:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35352 * 117.00280 * 2 1 4 4 N 1.30547 * 125.44624 * 180.02562 * 3 2 1 5 5 C 1.36334 * 108.38425 * 179.97438 * 4 3 2 6 6 C 1.47364 * 126.41743 * 179.97438 * 5 4 3 7 7 O 1.21617 * 120.00418 * 173.06900 * 6 5 4 8 8 N 1.34780 * 119.99705 * 353.06853 * 6 5 4 9 9 C 1.46927 * 120.63309 * 352.57039 * 8 6 5 10 10 C 1.53192 * 108.77543 * 233.88506 * 9 8 6 11 11 C 1.53044 * 109.31005 * 305.36091 * 10 9 8 12 12 H 1.08997 * 109.45845 * 301.34492 * 11 10 9 13 13 C 1.53003 * 109.45819 * 181.38755 * 11 10 9 14 14 N 1.46494 * 109.47077 * 64.93169 * 13 11 10 15 15 C 1.36937 * 119.99732 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00255 * 0.02562 * 15 14 13 17 17 C 1.38819 * 119.99758 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00167 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99608 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47187 * 60.00302 * 19 17 15 21 21 H 1.48508 * 109.46787 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47502 * 299.99842 * 19 17 15 23 23 C 1.53041 * 109.53788 * 61.36515 * 11 10 9 24 24 H 1.08998 * 109.52321 * 58.60372 * 23 11 10 25 25 C 1.52996 * 109.49445 * 178.67981 * 23 11 10 26 26 C 1.46923 * 120.62892 * 172.84492 * 8 6 5 27 27 C 1.35920 * 107.17290 * 0.21870 * 5 4 3 28 28 O 1.34204 * 125.44720 * 359.97343 * 3 2 1 29 29 H 1.09006 * 109.47206 * 300.00192 * 1 2 3 30 30 H 1.08996 * 109.47184 * 59.99782 * 1 2 3 31 31 H 1.08994 * 109.47637 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.58344 * 353.66468 * 9 8 6 33 33 H 1.08997 * 109.58734 * 114.09295 * 9 8 6 34 34 H 1.08999 * 109.49915 * 185.41206 * 10 9 8 35 35 H 1.09000 * 109.49886 * 65.31011 * 10 9 8 36 36 H 1.08997 * 109.47101 * 184.93151 * 13 11 10 37 37 H 1.09002 * 109.47061 * 304.93236 * 13 11 10 38 38 H 0.97000 * 120.00576 * 359.97438 * 14 13 11 39 39 H 0.96995 * 119.99622 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.46880 * 179.83482 * 25 23 11 41 41 H 1.08994 * 109.47636 * 299.83939 * 25 23 11 42 42 H 1.08998 * 109.47267 * 59.84525 * 25 23 11 43 43 H 1.08996 * 109.58948 * 245.90095 * 26 8 6 44 44 H 1.08996 * 109.58920 * 6.33651 * 26 8 6 45 45 H 1.07995 * 126.45697 * 179.77511 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 -0.0005 5 6 3.5702 2.7405 -0.0009 6 6 4.8892 3.3975 -0.0009 7 8 4.9675 4.6045 -0.1284 8 7 6.0090 2.6608 0.1403 9 6 5.9277 1.2283 0.4569 10 6 6.7751 0.9498 1.7023 11 6 8.1985 1.4626 1.4710 12 1 8.6247 0.9691 0.5976 13 6 9.0569 1.1550 2.6996 14 7 9.1864 -0.2960 2.8541 15 6 9.9161 -0.8116 3.8918 16 1 10.3957 -0.1486 4.5966 17 6 10.0383 -2.1866 4.0385 18 7 9.4533 -2.9946 3.1799 19 14 11.0331 -2.8899 5.4546 20 1 10.4452 -2.4426 6.7427 21 1 11.0091 -4.3733 5.3875 22 1 12.4362 -2.4133 5.3587 23 6 8.1660 2.9746 1.2371 24 1 7.7174 3.4671 2.0998 25 6 9.5924 3.4913 1.0387 26 6 7.3342 3.2761 -0.0135 27 6 2.3603 3.3600 0.0043 28 8 1.4228 2.3958 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 4.8905 0.9556 0.6522 33 1 6.3089 0.6464 -0.3822 34 1 6.8014 -0.1233 1.8920 35 1 6.3393 1.4609 2.5607 36 1 10.0453 1.5965 2.5719 37 1 8.5838 1.5742 3.5876 38 1 8.7553 -0.8915 2.2213 39 1 9.5385 -3.9553 3.2827 40 1 9.5685 4.5678 0.8692 41 1 10.1837 3.2766 1.9287 42 1 10.0410 2.9978 0.1766 43 1 7.8302 2.8612 -0.8909 44 1 7.2253 4.3545 -0.1286 45 1 2.1850 4.4256 0.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184864180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:23 Heat of formation + Delta-G solvation = -21.044822 kcal Electronic energy + Delta-G solvation = -27801.253840 eV Core-core repulsion = 23822.113674 eV Total energy + Delta-G solvation = -3979.140166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.77621 -40.15253 -39.14887 -37.92763 -35.46099 -34.78646 -33.36851 -31.86013 -30.45345 -30.19279 -27.84919 -27.02707 -26.76768 -24.34629 -23.31005 -22.78209 -22.26009 -21.25155 -20.43338 -19.49712 -18.37754 -17.85085 -17.37402 -16.95923 -16.74750 -15.96041 -15.61088 -15.59798 -15.11168 -14.73135 -14.37667 -14.04965 -13.88553 -13.68534 -13.43906 -13.18258 -12.93970 -12.70173 -12.56740 -12.47542 -12.30822 -11.84319 -11.68449 -11.55735 -11.33212 -10.93572 -10.88240 -10.73246 -10.72363 -10.35651 -10.29066 -10.09856 -9.95741 -9.55410 -9.53254 -9.02463 -8.78750 -8.47854 -6.83314 -5.70290 -2.97902 0.83996 1.58581 1.76245 2.41042 2.93502 3.15092 3.47904 3.52027 3.53160 4.11253 4.43948 4.55264 4.59421 4.64157 4.74249 4.93035 4.99439 5.04091 5.14884 5.17506 5.32578 5.38422 5.53434 5.63661 5.65549 5.75453 5.84171 5.91284 6.00744 6.07963 6.12800 6.21007 6.31279 6.38520 6.40116 6.54252 6.61180 6.66769 6.78760 6.93892 7.03952 7.17884 7.44205 7.75366 8.04433 8.49204 9.59996 10.19682 10.54385 11.52666 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.003198 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.324873 B = 8752.738636 C =10706.564034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.242 6.242 3 C 0.382 3.618 4 N -0.448 5.448 5 C -0.040 4.040 6 C 0.601 3.399 7 O -0.545 6.545 8 N -0.586 5.586 9 C 0.080 3.920 10 C -0.123 4.123 11 C -0.090 4.090 12 H 0.071 0.929 13 C 0.157 3.843 14 N -0.731 5.731 15 C -0.237 4.237 16 H 0.068 0.932 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.097 4.097 24 H 0.073 0.927 25 C -0.146 4.146 26 C 0.117 3.883 27 C 0.001 3.999 28 O -0.226 6.226 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.015 0.985 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.631 12.215 -9.714 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.149 6.149 3 C 0.137 3.863 4 N -0.195 5.195 5 C -0.159 4.159 6 C 0.387 3.613 7 O -0.423 6.423 8 N -0.316 5.316 9 C -0.042 4.042 10 C -0.161 4.161 11 C -0.109 4.109 12 H 0.090 0.910 13 C 0.029 3.971 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.086 0.914 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.116 4.116 24 H 0.091 0.909 25 C -0.204 4.204 26 C -0.005 4.005 27 C -0.072 4.072 28 O -0.117 6.117 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.033 0.967 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -18.057 12.069 -9.646 23.765 hybrid contribution -0.300 -0.298 0.650 0.776 sum -18.358 11.771 -8.996 23.590 Atomic orbital electron populations 1.23317 0.75085 1.05806 1.02931 1.86431 1.23688 1.15772 1.89025 1.23750 0.85847 0.79500 0.97230 1.71170 1.08725 1.15344 1.24228 1.21700 0.95834 0.88313 1.10040 1.16721 0.81937 0.85550 0.77044 1.90800 1.86363 1.12961 1.52222 1.47967 1.05235 1.11102 1.67336 1.22742 1.05210 0.78499 0.97758 1.21929 0.94551 1.02969 0.96693 1.21368 0.95896 0.93736 0.99930 0.91012 1.20751 0.95781 0.86902 0.93621 1.42376 1.62074 1.00042 1.33087 1.19190 1.23625 0.90289 1.03746 0.91392 1.24717 1.01244 0.96026 0.99053 1.69646 1.48400 1.02557 1.37680 0.86286 0.79948 0.77922 0.82144 1.21367 1.21729 1.21367 1.21451 0.95828 0.96799 0.97546 0.90902 1.21828 0.95733 1.00086 1.02756 1.21786 0.81349 0.99370 0.98020 1.24909 0.84832 0.93747 1.03673 1.84386 1.39560 1.15892 1.71893 0.91359 0.91435 0.86188 0.84974 0.91496 0.89359 0.92215 0.95900 0.96686 0.78256 0.93546 0.93026 0.91321 0.92507 0.91193 0.89151 0.74813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.73 101.05 1.08 1.19 16 2 O -0.24 -2.31 10.55 -40.98 -0.43 -2.74 16 3 C 0.38 4.23 8.98 52.22 0.47 4.70 16 4 N -0.45 -5.94 7.87 -11.71 -0.09 -6.03 16 5 C -0.04 -0.51 6.66 -82.98 -0.55 -1.07 16 6 C 0.60 8.73 7.67 -12.55 -0.10 8.63 16 7 O -0.54 -8.72 16.32 5.26 0.09 -8.64 16 8 N -0.59 -8.42 2.97 -174.06 -0.52 -8.94 16 9 C 0.08 1.17 6.10 -3.71 -0.02 1.15 16 10 C -0.12 -2.04 5.25 -26.61 -0.14 -2.18 16 11 C -0.09 -1.51 1.73 -90.57 -0.16 -1.66 16 12 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 13 C 0.16 3.22 5.41 -4.04 -0.02 3.20 16 14 N -0.73 -18.75 5.32 -59.91 -0.32 -19.06 16 15 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 19 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 C -0.10 -1.36 2.41 -90.50 -0.22 -1.57 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 25 C -0.15 -1.86 8.81 37.16 0.33 -1.53 16 26 C 0.12 1.56 5.73 -3.71 -0.02 1.54 16 27 C 0.00 0.01 11.94 29.90 0.36 0.36 16 28 O -0.23 -2.11 10.20 -17.76 -0.18 -2.29 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.13 1.99 4.12 -59.99 -0.25 1.74 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.66 7.15 -51.93 -0.37 1.29 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.47 6.14 -51.93 -0.32 0.16 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.38 10.26 6.84 -40.82 -0.28 9.98 16 39 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.94 6.30 -51.93 -0.33 0.61 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 45 H 0.24 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -34.01 365.39 -6.01 -40.03 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.53 Total: 6.89 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 0.76 Total: 5.33 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.20 Total: -61.79 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.53 Total: -13.67 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.01 -6.01 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184864180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.981 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds