Wall clock time and date at job start Tue Mar 31 2020 14:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.46793 * 2 1 4 4 C 1.35349 * 117.00209 * 180.02562 * 3 2 1 5 5 N 1.30550 * 125.44994 * 179.97438 * 4 3 2 6 6 C 1.36338 * 108.38377 * 179.97438 * 5 4 3 7 7 C 1.47363 * 126.41130 * 179.97438 * 6 5 4 8 8 O 1.21624 * 119.99663 * 173.41641 * 7 6 5 9 9 N 1.34774 * 120.00476 * 353.41655 * 7 6 5 10 10 C 1.46925 * 120.62666 * 3.94250 * 9 7 6 11 11 C 1.52766 * 109.00827 * 233.58462 * 10 9 7 12 12 C 1.53041 * 109.38171 * 305.59036 * 11 10 9 13 13 C 1.53000 * 109.44832 * 181.25680 * 12 11 10 14 14 N 1.46489 * 109.47614 * 64.93428 * 13 12 11 15 15 C 1.36936 * 120.00109 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00321 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99747 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00276 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46819 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47180 * 119.99854 * 19 17 15 22 22 H 1.48494 * 109.47284 * 239.99960 * 19 17 15 23 23 C 1.53038 * 109.53948 * 61.23513 * 12 11 10 24 24 C 1.46923 * 120.63603 * 184.22130 * 9 7 6 25 25 C 1.35918 * 107.17089 * 0.02562 * 6 5 4 26 26 O 1.34206 * 125.44431 * 359.69842 * 4 3 2 27 27 H 1.09003 * 109.47172 * 299.99607 * 1 2 3 28 28 H 1.08997 * 109.47507 * 59.99790 * 1 2 3 29 29 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46712 * 240.00123 * 2 1 3 31 31 H 1.09001 * 109.47254 * 119.99754 * 2 1 3 32 32 H 1.09003 * 109.58670 * 353.41615 * 10 9 7 33 33 H 1.08998 * 109.58983 * 113.84751 * 10 9 7 34 34 H 1.09003 * 109.56379 * 185.55445 * 11 10 9 35 35 H 1.08994 * 109.36226 * 65.49825 * 11 10 9 36 36 H 1.09000 * 109.45809 * 301.21510 * 12 11 10 37 37 H 1.09005 * 109.46735 * 184.94223 * 13 12 11 38 38 H 1.08999 * 109.46904 * 304.93337 * 13 12 11 39 39 H 0.97003 * 120.00292 * 0.02562 * 14 13 12 40 40 H 0.96997 * 119.99450 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.49914 * 178.68161 * 23 12 11 42 42 H 1.08998 * 109.52151 * 58.60979 * 23 12 11 43 43 H 1.08997 * 109.59112 * 246.16018 * 24 9 7 44 44 H 1.09006 * 109.58356 * 6.44160 * 24 9 7 45 45 H 1.08008 * 126.45123 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 -0.0011 6 6 5.3038 2.4525 -0.0009 7 6 6.3629 3.4773 -0.0020 8 8 7.5275 3.1482 0.1191 9 7 6.0410 4.7790 -0.1370 10 6 4.6346 5.1999 -0.1976 11 6 4.4213 6.0432 -1.4534 12 6 5.4247 7.1987 -1.4657 13 6 5.1919 8.0624 -2.7070 14 7 3.8727 8.6936 -2.6224 15 6 3.4425 9.5184 -3.6273 16 1 4.0757 9.7032 -4.4824 17 6 2.1926 10.1169 -3.5468 18 7 1.4211 9.8920 -2.5043 19 14 1.6055 11.2415 -4.9180 20 1 2.6513 11.3285 -5.9686 21 1 0.3572 10.6938 -5.5070 22 1 1.3411 12.5955 -4.3686 23 6 6.8490 6.6395 -1.4934 24 6 7.0897 5.8036 -0.2325 25 6 5.4845 1.1054 -0.0008 26 8 4.2630 0.5429 0.0047 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9914 4.3207 -0.2360 33 1 4.3927 5.7941 0.6836 34 1 3.4069 6.4422 -1.4572 35 1 4.5716 5.4215 -2.3360 36 1 5.2903 7.8059 -0.5705 37 1 5.9607 8.8331 -2.7627 38 1 5.2390 7.4372 -3.5986 39 1 3.3041 8.5279 -1.8541 40 1 0.5476 10.3100 -2.4483 41 1 7.5626 7.4628 -1.5258 42 1 6.9770 6.0123 -2.3757 43 1 7.0522 6.4479 0.6458 44 1 8.0661 5.3226 -0.2913 45 1 6.4309 0.5849 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205621581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:54 Heat of formation + Delta-G solvation = -23.387035 kcal Electronic energy + Delta-G solvation = -27462.097062 eV Core-core repulsion = 23482.855331 eV Total energy + Delta-G solvation = -3979.241732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.77354 -40.05952 -39.27362 -37.61948 -35.43997 -34.75958 -32.74336 -32.36368 -30.97177 -30.22356 -29.78252 -26.81440 -24.85535 -24.06746 -23.35940 -23.13443 -22.46943 -21.47913 -20.47873 -19.59249 -18.43824 -17.89788 -17.44034 -16.95649 -16.72458 -16.00155 -15.85816 -15.30071 -15.12414 -14.68000 -14.14860 -14.12895 -13.67543 -13.63388 -13.50253 -13.37121 -13.23494 -13.15527 -12.74623 -12.42904 -12.22888 -12.19538 -11.83135 -11.66506 -11.20760 -11.11813 -10.96970 -10.82412 -10.71104 -10.33820 -10.29836 -10.17824 -9.94485 -9.58396 -9.39497 -9.02076 -8.80920 -8.49722 -6.84209 -5.70764 -2.98460 0.85277 1.56184 1.77117 2.38156 2.94033 3.17189 3.46831 3.52399 3.54683 4.09114 4.30509 4.32685 4.58514 4.61978 4.64155 4.71644 5.03806 5.13516 5.16010 5.20225 5.24419 5.25379 5.35303 5.43949 5.55439 5.57293 5.63645 5.80199 5.81014 6.07439 6.08646 6.11485 6.24521 6.29829 6.37531 6.50269 6.62355 6.74239 6.81822 6.95355 7.03079 7.18893 7.46599 7.76195 8.05775 8.48671 9.59641 10.19118 10.53949 11.52316 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010989 B = 0.003131 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.338320 B = 8940.830387 C =11185.646568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.242 6.242 4 C 0.388 3.612 5 N -0.449 5.449 6 C -0.039 4.039 7 C 0.600 3.400 8 O -0.546 6.546 9 N -0.584 5.584 10 C 0.061 3.939 11 C -0.120 4.120 12 C -0.096 4.096 13 C 0.159 3.841 14 N -0.732 5.732 15 C -0.236 4.236 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.125 4.125 24 C 0.112 3.888 25 C 0.000 4.000 26 O -0.226 6.226 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 -23.582 8.207 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.150 6.150 4 C 0.143 3.857 5 N -0.195 5.195 6 C -0.157 4.157 7 C 0.387 3.613 8 O -0.425 6.425 9 N -0.314 5.314 10 C -0.061 4.061 11 C -0.158 4.158 12 C -0.115 4.115 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.367 4.367 16 H 0.087 0.913 17 C -0.212 4.212 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.163 4.163 24 C -0.010 4.010 25 C -0.072 4.072 26 O -0.117 6.117 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 4.776 -23.005 8.116 24.857 hybrid contribution -0.387 -0.053 -0.560 0.683 sum 4.389 -23.058 7.556 24.658 Atomic orbital electron populations 1.21825 0.91085 1.03639 1.04513 1.23081 0.97042 0.79266 1.02979 1.86439 1.08858 1.30890 1.88856 1.23754 0.83479 0.81744 0.96732 1.70909 1.03961 1.19691 1.24968 1.21706 0.90112 0.93985 1.09914 1.16727 0.85951 0.81566 0.77085 1.90800 1.18431 1.81138 1.52178 1.47990 1.09016 1.05141 1.69296 1.23028 0.80975 1.03618 0.98434 1.21791 1.00908 0.96146 0.96928 1.21347 0.93584 0.96470 1.00129 1.20663 0.88903 0.93325 0.94007 1.42389 1.14886 1.55530 1.24795 1.19284 0.99092 1.19273 0.99059 0.91267 1.24730 0.97160 1.01211 0.98057 1.69674 1.10827 1.48168 1.29580 0.86129 0.78385 0.80412 0.81370 1.20631 1.21935 1.21937 1.21901 0.97816 0.99270 0.97351 1.21705 0.91372 0.89463 0.98493 1.24888 0.85838 0.92690 1.03826 1.84392 1.16235 1.39171 1.71914 0.90850 0.90718 0.89466 0.90749 0.90812 0.83312 0.91798 0.89490 0.92271 0.91057 0.96498 0.96527 0.78214 0.93648 0.90599 0.91641 0.91234 0.89206 0.74800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.28 37.16 0.38 -0.32 16 2 C 0.05 0.30 6.38 37.16 0.24 0.54 16 3 O -0.24 -2.46 10.19 -40.97 -0.42 -2.88 16 4 C 0.39 4.42 8.98 52.22 0.47 4.89 16 5 N -0.45 -6.04 7.71 -11.71 -0.09 -6.13 16 6 C -0.04 -0.50 6.74 -82.98 -0.56 -1.06 16 7 C 0.60 8.77 7.69 -12.55 -0.10 8.67 16 8 O -0.55 -8.77 16.32 5.26 0.09 -8.68 16 9 N -0.58 -8.46 2.98 -174.32 -0.52 -8.97 16 10 C 0.06 0.91 6.29 -3.93 -0.02 0.89 16 11 C -0.12 -2.01 5.23 -26.83 -0.14 -2.15 16 12 C -0.10 -1.62 2.19 -90.58 -0.20 -1.82 16 13 C 0.16 3.30 5.65 -4.05 -0.02 3.28 16 14 N -0.73 -18.93 5.32 -59.91 -0.32 -19.24 16 15 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 19 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 C -0.12 -1.74 5.36 -26.62 -0.14 -1.88 16 24 C 0.11 1.48 6.42 -3.72 -0.02 1.46 16 25 C 0.00 0.00 11.94 29.90 0.36 0.35 16 26 O -0.23 -2.16 10.20 -17.75 -0.18 -2.34 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.15 2.27 3.62 -80.29 -0.29 1.98 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.66 7.15 -51.93 -0.37 1.29 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 10.34 6.84 -40.82 -0.28 10.06 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.18 7.03 -51.93 -0.36 0.81 16 45 H 0.24 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -34.10 369.98 -6.95 -41.05 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.77 Total: 6.32 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.01 Total: 5.39 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.20 Total: -62.21 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.51 Total: -13.90 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.10 -6.95 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.662 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds