Wall clock time and date at job start Tue Mar 31 2020 14:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.46793 * 2 1 4 4 C 1.35349 * 117.00209 * 180.02562 * 3 2 1 5 5 N 1.30550 * 125.44994 * 179.97438 * 4 3 2 6 6 C 1.36338 * 108.38377 * 179.97438 * 5 4 3 7 7 C 1.47363 * 126.41130 * 179.97438 * 6 5 4 8 8 O 1.21624 * 119.99663 * 173.41641 * 7 6 5 9 9 N 1.34774 * 120.00476 * 353.41655 * 7 6 5 10 10 C 1.46925 * 120.62666 * 3.94250 * 9 7 6 11 11 C 1.52766 * 109.00827 * 233.58462 * 10 9 7 12 12 C 1.53041 * 109.38171 * 305.59036 * 11 10 9 13 13 C 1.53000 * 109.44832 * 181.25680 * 12 11 10 14 14 N 1.46489 * 109.47614 * 64.93428 * 13 12 11 15 15 C 1.36936 * 120.00109 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00321 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99747 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00276 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46819 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47180 * 119.99854 * 19 17 15 22 22 H 1.48494 * 109.47284 * 239.99960 * 19 17 15 23 23 C 1.53038 * 109.53948 * 61.23513 * 12 11 10 24 24 C 1.46923 * 120.63603 * 184.22130 * 9 7 6 25 25 C 1.35918 * 107.17089 * 0.02562 * 6 5 4 26 26 O 1.34206 * 125.44431 * 359.69842 * 4 3 2 27 27 H 1.09003 * 109.47172 * 299.99607 * 1 2 3 28 28 H 1.08997 * 109.47507 * 59.99790 * 1 2 3 29 29 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46712 * 240.00123 * 2 1 3 31 31 H 1.09001 * 109.47254 * 119.99754 * 2 1 3 32 32 H 1.09003 * 109.58670 * 353.41615 * 10 9 7 33 33 H 1.08998 * 109.58983 * 113.84751 * 10 9 7 34 34 H 1.09003 * 109.56379 * 185.55445 * 11 10 9 35 35 H 1.08994 * 109.36226 * 65.49825 * 11 10 9 36 36 H 1.09000 * 109.45809 * 301.21510 * 12 11 10 37 37 H 1.09005 * 109.46735 * 184.94223 * 13 12 11 38 38 H 1.08999 * 109.46904 * 304.93337 * 13 12 11 39 39 H 0.97003 * 120.00292 * 0.02562 * 14 13 12 40 40 H 0.96997 * 119.99450 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.49914 * 178.68161 * 23 12 11 42 42 H 1.08998 * 109.52151 * 58.60979 * 23 12 11 43 43 H 1.08997 * 109.59112 * 246.16018 * 24 9 7 44 44 H 1.09006 * 109.58356 * 6.44160 * 24 9 7 45 45 H 1.08008 * 126.45123 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 -0.0011 6 6 5.3038 2.4525 -0.0009 7 6 6.3629 3.4773 -0.0020 8 8 7.5275 3.1482 0.1191 9 7 6.0410 4.7790 -0.1370 10 6 4.6346 5.1999 -0.1976 11 6 4.4213 6.0432 -1.4534 12 6 5.4247 7.1987 -1.4657 13 6 5.1919 8.0624 -2.7070 14 7 3.8727 8.6936 -2.6224 15 6 3.4425 9.5184 -3.6273 16 1 4.0757 9.7032 -4.4824 17 6 2.1926 10.1169 -3.5468 18 7 1.4211 9.8920 -2.5043 19 14 1.6055 11.2415 -4.9180 20 1 2.6513 11.3285 -5.9686 21 1 0.3572 10.6938 -5.5070 22 1 1.3411 12.5955 -4.3686 23 6 6.8490 6.6395 -1.4934 24 6 7.0897 5.8036 -0.2325 25 6 5.4845 1.1054 -0.0008 26 8 4.2630 0.5429 0.0047 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9914 4.3207 -0.2360 33 1 4.3927 5.7941 0.6836 34 1 3.4069 6.4422 -1.4572 35 1 4.5716 5.4215 -2.3360 36 1 5.2903 7.8059 -0.5705 37 1 5.9607 8.8331 -2.7627 38 1 5.2390 7.4372 -3.5986 39 1 3.3041 8.5279 -1.8541 40 1 0.5476 10.3100 -2.4483 41 1 7.5626 7.4628 -1.5258 42 1 6.9770 6.0123 -2.3757 43 1 7.0522 6.4479 0.6458 44 1 8.0661 5.3226 -0.2913 45 1 6.4309 0.5849 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205621581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:53 Heat of formation + Delta-G solvation = -47.787383 kcal Electronic energy + Delta-G solvation = -27463.155141 eV Core-core repulsion = 23482.855331 eV Total energy + Delta-G solvation = -3980.299810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.60876 -41.18403 -39.98792 -38.92161 -36.64248 -36.17064 -34.40586 -32.93078 -32.35486 -31.89453 -30.63370 -28.35371 -26.15956 -25.03042 -24.55716 -24.31259 -23.52287 -22.77046 -21.60814 -20.73739 -19.43325 -19.15511 -18.67029 -18.35429 -17.49933 -16.98044 -16.72276 -16.63160 -16.16708 -16.06938 -15.64190 -15.41484 -15.31353 -15.04630 -14.60902 -14.42143 -14.13859 -13.99737 -13.93273 -13.61541 -13.55619 -13.09432 -12.94205 -12.76667 -12.67215 -12.60078 -12.32447 -12.15376 -11.95665 -11.89448 -11.80189 -11.67916 -11.47624 -11.31958 -10.96019 -10.52917 -9.91597 -9.60282 -8.97523 -7.93709 -5.22231 0.00944 0.80281 0.85263 1.47349 1.48352 1.58517 1.63495 1.92580 2.13858 2.56823 3.13466 3.39406 3.70003 3.75475 3.82826 3.92981 3.93262 3.95199 4.00226 4.17027 4.25100 4.29002 4.31847 4.39876 4.50202 4.60012 4.63231 4.75854 4.79577 4.86697 4.86733 4.94341 5.02024 5.07429 5.15666 5.18074 5.25134 5.33025 5.47737 5.54360 5.57502 5.83233 6.23225 6.28853 6.44953 6.96631 7.34931 8.11444 8.35564 9.30014 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010989 B = 0.003131 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.338320 B = 8940.830387 C =11185.646568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.042 3.958 3 O -0.259 6.259 4 C 0.389 3.611 5 N -0.481 5.481 6 C -0.077 4.077 7 C 0.600 3.400 8 O -0.564 6.564 9 N -0.589 5.589 10 C 0.071 3.929 11 C -0.110 4.110 12 C -0.086 4.086 13 C 0.158 3.842 14 N -0.743 5.743 15 C -0.245 4.245 16 H 0.073 0.927 17 C -0.076 4.076 18 N -0.968 5.968 19 Si 0.974 3.026 20 H -0.267 1.267 21 H -0.293 1.293 22 H -0.292 1.292 23 C -0.114 4.114 24 C 0.113 3.887 25 C 0.035 3.965 26 O -0.213 6.213 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.022 0.978 38 H 0.013 0.987 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -25.056 8.046 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.168 6.168 4 C 0.143 3.857 5 N -0.228 5.228 6 C -0.194 4.194 7 C 0.388 3.612 8 O -0.445 6.445 9 N -0.319 5.319 10 C -0.051 4.051 11 C -0.149 4.149 12 C -0.105 4.105 13 C 0.032 3.968 14 N -0.386 5.386 15 C -0.377 4.377 16 H 0.091 0.909 17 C -0.268 4.268 18 N -0.619 5.619 19 Si 0.803 3.197 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.219 1.219 23 C -0.153 4.153 24 C -0.009 4.009 25 C -0.038 4.038 26 O -0.104 6.104 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.031 0.969 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.114 0.886 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 5.742 -24.496 7.944 26.384 hybrid contribution -0.677 0.291 -0.508 0.895 sum 5.065 -24.206 7.436 25.824 Atomic orbital electron populations 1.21876 0.90165 1.05060 1.03733 1.23447 0.97743 0.77683 1.04313 1.86456 1.08180 1.33450 1.88693 1.23660 0.84070 0.81654 0.96288 1.70671 1.04630 1.21200 1.26268 1.21576 0.89686 0.94863 1.13315 1.16918 0.86172 0.81708 0.76357 1.90778 1.19143 1.81384 1.53157 1.48030 1.08756 1.05646 1.69489 1.22871 0.81733 1.03332 0.97145 1.21642 0.99303 0.96196 0.97737 1.21237 0.95618 0.95746 0.97904 1.20811 0.86673 0.93583 0.95769 1.42587 1.16535 1.55551 1.23957 1.19667 0.99283 1.19172 0.99586 0.90911 1.25569 0.97490 1.03181 1.00568 1.69831 1.11049 1.49483 1.31529 0.85068 0.77837 0.78074 0.78750 1.19187 1.21970 1.21905 1.21818 0.95862 0.99818 0.97778 1.21758 0.91357 0.89326 0.98441 1.25574 0.86648 0.91746 0.99789 1.84438 1.16031 1.38414 1.71479 0.91388 0.91721 0.86881 0.89594 0.89255 0.83177 0.91762 0.92356 0.93104 0.91442 0.96022 0.96901 0.79268 0.94000 0.88769 0.91900 0.90074 0.88556 0.71293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 71.98 0.74 -0.47 16 2 C 0.04 0.44 6.38 71.98 0.46 0.90 16 3 O -0.26 -5.14 10.19 -64.17 -0.65 -5.79 16 4 C 0.39 8.53 8.98 130.43 1.17 9.70 16 5 N -0.48 -12.83 7.71 -419.39 -3.23 -16.06 16 6 C -0.08 -1.91 6.74 40.31 0.27 -1.63 16 7 C 0.60 16.99 7.69 86.65 0.67 17.66 16 8 O -0.56 -17.30 16.32 -4.11 -0.07 -17.37 16 9 N -0.59 -16.69 2.98 -823.68 -2.45 -19.15 16 10 C 0.07 2.16 6.29 86.22 0.54 2.70 16 11 C -0.11 -3.81 5.23 30.53 0.16 -3.65 16 12 C -0.09 -2.90 2.19 -10.77 -0.02 -2.92 16 13 C 0.16 6.60 5.65 86.38 0.49 7.09 16 14 N -0.74 -39.14 5.32 -343.47 -1.83 -40.96 16 15 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 16 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 17 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 18 N -0.97 -60.34 13.06 21.65 0.28 -60.05 16 19 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 C -0.11 -3.04 5.36 30.67 0.16 -2.88 16 24 C 0.11 2.84 6.42 86.36 0.55 3.40 16 25 C 0.03 0.59 11.94 67.28 0.80 1.39 16 26 O -0.21 -3.62 10.20 18.90 0.19 -3.42 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.15 4.68 3.62 -58.38 -0.21 4.47 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 2.34 7.15 -2.39 -0.02 2.32 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.37 20.85 6.84 -92.71 -0.63 20.22 16 40 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.10 2.36 7.03 -2.38 -0.02 2.34 16 45 H 0.27 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -73.59 369.98 1.74 -71.85 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.17 Total: 27.84 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 7.30 Total: 14.01 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -7.23 Total: -136.22 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.53 Total: -26.59 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.59 1.74 -71.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.062 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds