Wall clock time and date at job start Tue Mar 31 2020 14:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.46748 * 2 1 4 4 C 1.35730 * 116.99934 * 180.02562 * 3 2 1 5 5 C 1.41853 * 126.79074 * 179.97438 * 4 3 2 6 6 C 1.36662 * 103.81471 * 179.97438 * 5 4 3 7 7 C 1.47539 * 126.87935 * 179.97438 * 6 5 4 8 8 O 1.21575 * 120.00292 * 353.41812 * 7 6 5 9 9 N 1.34775 * 119.99909 * 173.69225 * 7 6 5 10 10 C 1.46931 * 120.62964 * 3.68568 * 9 7 6 11 11 C 1.52767 * 109.00721 * 233.58436 * 10 9 7 12 12 C 1.53036 * 109.38361 * 305.59002 * 11 10 9 13 13 C 1.53000 * 109.44709 * 181.25355 * 12 11 10 14 14 N 1.46502 * 109.47291 * 64.93808 * 13 12 11 15 15 C 1.36930 * 120.00355 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00367 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99484 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00326 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47125 * 60.00171 * 19 17 15 21 21 H 1.48501 * 109.47016 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47072 * 300.00149 * 19 17 15 23 23 C 1.53041 * 109.53972 * 61.24236 * 12 11 10 24 24 C 1.46925 * 120.63093 * 183.97337 * 9 7 6 25 25 O 1.34664 * 106.24039 * 0.26690 * 6 5 4 26 26 N 1.20880 * 111.63029 * 359.51777 * 25 6 5 27 27 H 1.08996 * 109.47384 * 300.00691 * 1 2 3 28 28 H 1.09002 * 109.46577 * 60.00669 * 1 2 3 29 29 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47415 * 239.99812 * 2 1 3 31 31 H 1.09002 * 109.46577 * 119.99331 * 2 1 3 32 32 H 1.07998 * 128.08997 * 359.94624 * 5 4 3 33 33 H 1.08991 * 109.58544 * 353.42166 * 10 9 7 34 34 H 1.09000 * 109.58021 * 113.85090 * 10 9 7 35 35 H 1.08997 * 109.56157 * 185.55485 * 11 10 9 36 36 H 1.09000 * 109.35599 * 65.50667 * 11 10 9 37 37 H 1.09001 * 109.46326 * 301.21927 * 12 11 10 38 38 H 1.08998 * 109.47416 * 184.93995 * 13 12 11 39 39 H 1.09001 * 109.47465 * 304.94105 * 13 12 11 40 40 H 0.97009 * 119.99367 * 0.02562 * 14 13 12 41 41 H 0.97008 * 120.00085 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.50029 * 178.68164 * 23 12 11 43 43 H 1.09003 * 109.52359 * 58.59704 * 23 12 11 44 44 H 1.09010 * 109.58400 * 246.15078 * 24 9 7 45 45 H 1.09000 * 109.58766 * 6.43295 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0452 2.7628 -0.0012 6 6 5.3625 2.3988 -0.0009 7 6 6.5302 3.3006 -0.0019 8 8 6.3721 4.4999 -0.1237 9 7 7.7727 2.7944 0.1267 10 6 7.9866 1.3420 0.1878 11 6 8.7974 1.0108 1.4395 12 6 10.0856 1.8370 1.4436 13 6 10.9136 1.4835 2.6807 14 7 11.3474 0.0868 2.5952 15 6 12.1071 -0.4568 3.5964 16 1 12.3861 0.1440 4.4493 17 6 12.5186 -1.7800 3.5152 18 7 12.1781 -2.5124 2.4759 19 14 13.5556 -2.5213 4.8807 20 1 12.8069 -2.4565 6.1615 21 1 13.8603 -3.9382 4.5572 22 1 14.8232 -1.7586 5.0091 23 6 9.7379 3.3271 1.4716 24 6 8.9383 3.6845 0.2148 25 8 5.3812 1.0523 -0.0063 26 7 4.2639 0.5912 -0.0001 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.6293 3.7594 -0.0021 33 1 7.0242 0.8325 0.2321 34 1 8.5348 1.0160 -0.6961 35 1 9.0459 -0.0505 1.4431 36 1 8.2088 1.2501 2.3251 37 1 10.6620 1.6155 0.5454 38 1 11.7875 2.1329 2.7308 39 1 10.3068 1.6212 3.5756 40 1 11.0970 -0.4528 1.8288 41 1 12.4653 -3.4372 2.4192 42 1 10.6557 3.9145 1.4982 43 1 9.1406 3.5452 2.3570 44 1 9.5656 3.5533 -0.6670 45 1 8.6035 4.7201 0.2743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205707272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:57 Heat of formation + Delta-G solvation = 12.780628 kcal Electronic energy + Delta-G solvation = -27303.174083 eV Core-core repulsion = 23325.500699 eV Total energy + Delta-G solvation = -3977.673384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.26785 -40.31259 -39.31357 -37.91133 -35.09306 -33.83068 -33.13784 -32.27389 -31.59333 -30.87290 -30.35860 -27.03176 -25.00573 -23.97846 -23.80222 -23.16453 -22.88482 -21.54076 -20.84367 -19.82136 -18.36960 -18.25090 -17.35905 -17.10660 -16.43668 -16.31035 -16.03342 -15.33712 -14.96157 -14.73805 -14.38024 -14.18977 -14.11166 -13.72444 -13.56734 -13.47312 -13.32274 -13.09702 -12.76840 -12.40744 -12.30314 -12.20301 -11.85231 -11.59689 -11.53569 -11.18523 -11.00931 -10.82837 -10.57611 -10.45906 -10.34416 -10.17484 -10.14604 -9.99078 -9.65550 -9.61201 -8.87067 -8.82317 -6.91660 -5.76758 -3.04898 0.49296 1.82849 2.24655 2.26614 2.72000 2.99632 3.44116 3.48595 3.49464 3.76947 4.17862 4.45988 4.49867 4.56537 4.58524 4.79615 4.86143 4.93442 4.96243 5.02799 5.12013 5.17772 5.32026 5.33513 5.37245 5.53052 5.56564 5.58488 5.60465 5.78706 5.87301 5.90566 6.08099 6.15443 6.24972 6.31590 6.44294 6.59535 6.64623 6.78567 6.90046 7.03390 7.61732 7.69846 7.87500 8.42626 9.53713 10.11709 10.46315 11.46115 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013677 B = 0.002686 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.772853 B =10421.694996 C =12132.359115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.208 3.792 5 C -0.155 4.155 6 C -0.054 4.054 7 C 0.603 3.397 8 O -0.518 6.518 9 N -0.590 5.590 10 C 0.091 3.909 11 C -0.124 4.124 12 C -0.095 4.095 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.239 4.239 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.127 4.127 24 C 0.113 3.887 25 O 0.118 5.882 26 N -0.392 5.392 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.189 0.811 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.393 9.924 -8.088 23.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.011 3.989 5 C -0.177 4.177 6 C -0.120 4.120 7 C 0.388 3.612 8 O -0.395 6.395 9 N -0.322 5.322 10 C -0.031 4.031 11 C -0.163 4.163 12 C -0.114 4.114 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.166 4.166 24 C -0.008 4.008 25 O 0.056 5.944 26 N -0.118 5.118 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.207 0.793 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.656 9.413 -8.004 23.217 hybrid contribution 0.329 -0.287 0.576 0.723 sum -19.327 9.126 -7.428 22.627 Atomic orbital electron populations 1.21799 0.92087 1.03311 1.03655 1.22866 0.95939 0.80381 1.02677 1.86211 1.12937 1.30463 1.89282 1.21800 0.85887 0.90363 1.00860 1.22149 0.90012 0.99270 1.06310 1.24034 0.96469 0.84403 1.07066 1.16598 0.80899 0.85880 0.77865 1.90854 1.84528 1.13342 1.50781 1.48114 1.05535 1.08732 1.69769 1.22346 1.02289 0.78247 1.00244 1.21856 0.95786 1.02259 0.96351 1.21337 0.96153 0.93391 1.00555 1.20664 0.94694 0.87707 0.93874 1.42364 1.62864 1.07196 1.25200 1.19180 1.24150 0.94307 0.99393 0.91326 1.24726 1.01487 0.96714 0.98069 1.69642 1.50586 1.08271 1.29793 0.86273 0.80256 0.78192 0.81501 1.21321 1.21703 1.21305 1.21938 1.00119 0.97174 0.97334 1.21786 0.85560 0.94526 0.98923 1.85116 1.22051 1.18594 1.68650 1.74018 0.90900 1.22619 1.24264 0.91315 0.91356 0.89854 0.91422 0.91343 0.79341 0.88187 0.90128 0.88884 0.91678 0.90733 0.96312 0.96409 0.78240 0.93481 0.90194 0.91381 0.90664 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.46 6.38 37.16 0.24 0.70 16 3 O -0.28 -3.01 10.21 -18.90 -0.19 -3.20 16 4 C 0.21 2.45 8.00 -16.72 -0.13 2.32 16 5 C -0.15 -1.71 10.97 -38.77 -0.43 -2.14 16 6 C -0.05 -0.65 6.98 -36.36 -0.25 -0.90 16 7 C 0.60 7.73 7.69 -12.47 -0.10 7.63 16 8 O -0.52 -7.67 16.34 5.30 0.09 -7.58 16 9 N -0.59 -7.03 2.98 -174.25 -0.52 -7.55 16 10 C 0.09 1.08 6.30 -3.93 -0.02 1.05 16 11 C -0.12 -1.77 5.23 -26.83 -0.14 -1.91 16 12 C -0.10 -1.40 2.19 -90.58 -0.20 -1.60 16 13 C 0.16 3.03 5.65 -4.04 -0.02 3.01 16 14 N -0.73 -17.91 5.32 -59.91 -0.32 -18.23 16 15 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 19 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C -0.13 -1.50 5.36 -26.61 -0.14 -1.65 16 24 C 0.11 1.24 6.42 -3.71 -0.02 1.22 16 25 O 0.12 1.46 7.74 15.49 0.12 1.58 16 26 N -0.39 -4.97 11.50 30.47 0.35 -4.61 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.19 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.10 1.17 3.83 -54.72 -0.21 0.96 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.53 7.15 -51.93 -0.37 1.16 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 9.74 6.84 -40.82 -0.28 9.46 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 45 H 0.09 1.03 7.03 -51.93 -0.36 0.66 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -31.91 369.86 -6.98 -38.88 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.69 Total: 4.96 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.09 Total: 0.03 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.24 Total: -57.48 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.01 Total: -9.21 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.91 -6.98 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205707272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.663 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds