Wall clock time and date at job start Tue Mar 31 2020 14:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.46748 * 2 1 4 4 C 1.35730 * 116.99934 * 180.02562 * 3 2 1 5 5 C 1.41853 * 126.79074 * 179.97438 * 4 3 2 6 6 C 1.36662 * 103.81471 * 179.97438 * 5 4 3 7 7 C 1.47539 * 126.87935 * 179.97438 * 6 5 4 8 8 O 1.21575 * 120.00292 * 353.41812 * 7 6 5 9 9 N 1.34775 * 119.99909 * 173.69225 * 7 6 5 10 10 C 1.46931 * 120.62964 * 3.68568 * 9 7 6 11 11 C 1.52767 * 109.00721 * 233.58436 * 10 9 7 12 12 C 1.53036 * 109.38361 * 305.59002 * 11 10 9 13 13 C 1.53000 * 109.44709 * 181.25355 * 12 11 10 14 14 N 1.46502 * 109.47291 * 64.93808 * 13 12 11 15 15 C 1.36930 * 120.00355 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00367 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99484 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00326 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47125 * 60.00171 * 19 17 15 21 21 H 1.48501 * 109.47016 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47072 * 300.00149 * 19 17 15 23 23 C 1.53041 * 109.53972 * 61.24236 * 12 11 10 24 24 C 1.46925 * 120.63093 * 183.97337 * 9 7 6 25 25 O 1.34664 * 106.24039 * 0.26690 * 6 5 4 26 26 N 1.20880 * 111.63029 * 359.51777 * 25 6 5 27 27 H 1.08996 * 109.47384 * 300.00691 * 1 2 3 28 28 H 1.09002 * 109.46577 * 60.00669 * 1 2 3 29 29 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47415 * 239.99812 * 2 1 3 31 31 H 1.09002 * 109.46577 * 119.99331 * 2 1 3 32 32 H 1.07998 * 128.08997 * 359.94624 * 5 4 3 33 33 H 1.08991 * 109.58544 * 353.42166 * 10 9 7 34 34 H 1.09000 * 109.58021 * 113.85090 * 10 9 7 35 35 H 1.08997 * 109.56157 * 185.55485 * 11 10 9 36 36 H 1.09000 * 109.35599 * 65.50667 * 11 10 9 37 37 H 1.09001 * 109.46326 * 301.21927 * 12 11 10 38 38 H 1.08998 * 109.47416 * 184.93995 * 13 12 11 39 39 H 1.09001 * 109.47465 * 304.94105 * 13 12 11 40 40 H 0.97009 * 119.99367 * 0.02562 * 14 13 12 41 41 H 0.97008 * 120.00085 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.50029 * 178.68164 * 23 12 11 43 43 H 1.09003 * 109.52359 * 58.59704 * 23 12 11 44 44 H 1.09010 * 109.58400 * 246.15078 * 24 9 7 45 45 H 1.09000 * 109.58766 * 6.43295 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0452 2.7628 -0.0012 6 6 5.3625 2.3988 -0.0009 7 6 6.5302 3.3006 -0.0019 8 8 6.3721 4.4999 -0.1237 9 7 7.7727 2.7944 0.1267 10 6 7.9866 1.3420 0.1878 11 6 8.7974 1.0108 1.4395 12 6 10.0856 1.8370 1.4436 13 6 10.9136 1.4835 2.6807 14 7 11.3474 0.0868 2.5952 15 6 12.1071 -0.4568 3.5964 16 1 12.3861 0.1440 4.4493 17 6 12.5186 -1.7800 3.5152 18 7 12.1781 -2.5124 2.4759 19 14 13.5556 -2.5213 4.8807 20 1 12.8069 -2.4565 6.1615 21 1 13.8603 -3.9382 4.5572 22 1 14.8232 -1.7586 5.0091 23 6 9.7379 3.3271 1.4716 24 6 8.9383 3.6845 0.2148 25 8 5.3812 1.0523 -0.0063 26 7 4.2639 0.5912 -0.0001 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.6293 3.7594 -0.0021 33 1 7.0242 0.8325 0.2321 34 1 8.5348 1.0160 -0.6961 35 1 9.0459 -0.0505 1.4431 36 1 8.2088 1.2501 2.3251 37 1 10.6620 1.6155 0.5454 38 1 11.7875 2.1329 2.7308 39 1 10.3068 1.6212 3.5756 40 1 11.0970 -0.4528 1.8288 41 1 12.4653 -3.4372 2.4192 42 1 10.6557 3.9145 1.4982 43 1 9.1406 3.5452 2.3570 44 1 9.5656 3.5533 -0.6670 45 1 8.6035 4.7201 0.2743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205707272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:56 Heat of formation + Delta-G solvation = -9.010010 kcal Electronic energy + Delta-G solvation = -27304.118996 eV Core-core repulsion = 23325.500699 eV Total energy + Delta-G solvation = -3978.618297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.19052 -41.33255 -40.10954 -39.06589 -36.64145 -34.79052 -34.51714 -33.40382 -32.29781 -32.09308 -31.83228 -28.44334 -26.24707 -25.11653 -24.81243 -24.20278 -24.05818 -22.71523 -21.88966 -20.92656 -19.43125 -19.18065 -19.00698 -18.23278 -17.48850 -17.04788 -16.96030 -16.68580 -16.30668 -15.76690 -15.57776 -15.39766 -15.33424 -15.15441 -14.93188 -14.47777 -14.11915 -14.07625 -13.82547 -13.57643 -13.47942 -13.11906 -12.94807 -12.91565 -12.71132 -12.38830 -12.22896 -12.17098 -12.13539 -11.93560 -11.67019 -11.65853 -11.32113 -11.24409 -11.06335 -10.88272 -10.48204 -9.83274 -8.95152 -7.92688 -5.20152 -0.44177 0.92302 1.31511 1.45284 1.48502 1.50853 1.56971 1.74828 2.06943 2.57989 2.89271 3.26041 3.40792 3.59457 3.78226 3.84923 3.89381 3.91174 3.91499 4.06305 4.09922 4.25857 4.32836 4.35983 4.46410 4.54213 4.60707 4.74957 4.78313 4.84904 4.85582 4.87540 4.98164 5.05925 5.12150 5.14762 5.18830 5.24519 5.47717 5.52441 5.57037 5.84874 6.03946 6.30298 6.64253 6.94448 7.37037 8.14421 8.37811 9.30460 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013677 B = 0.002686 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.772853 B =10421.694996 C =12132.359115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.288 6.288 4 C 0.205 3.795 5 C -0.147 4.147 6 C -0.062 4.062 7 C 0.606 3.394 8 O -0.539 6.539 9 N -0.588 5.588 10 C 0.100 3.900 11 C -0.118 4.118 12 C -0.085 4.085 13 C 0.156 3.844 14 N -0.743 5.743 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.970 3.030 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.278 1.278 23 C -0.117 4.117 24 C 0.115 3.885 25 O 0.114 5.886 26 N -0.406 5.406 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.208 0.792 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.022 0.978 39 H 0.013 0.987 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.972 10.935 -8.187 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.195 6.195 4 C 0.008 3.992 5 C -0.170 4.170 6 C -0.128 4.128 7 C 0.392 3.608 8 O -0.417 6.417 9 N -0.319 5.319 10 C -0.022 4.022 11 C -0.157 4.157 12 C -0.104 4.104 13 C 0.030 3.970 14 N -0.386 5.386 15 C -0.377 4.377 16 H 0.090 0.910 17 C -0.267 4.267 18 N -0.618 5.618 19 Si 0.799 3.201 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.205 1.205 23 C -0.156 4.156 24 C -0.006 4.006 25 O 0.052 5.948 26 N -0.134 5.134 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.225 0.775 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.031 0.969 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.238 10.462 -8.089 24.175 hybrid contribution 0.456 -0.572 0.629 0.964 sum -19.782 9.890 -7.459 23.341 Atomic orbital electron populations 1.21824 0.89926 1.04649 1.03856 1.23110 0.97629 0.79335 1.02485 1.86229 1.12245 1.31921 1.89069 1.21987 0.86350 0.90458 1.00424 1.22424 0.89617 0.99877 1.05049 1.23987 0.96633 0.84315 1.07828 1.16610 0.81120 0.85626 0.77455 1.90843 1.84824 1.14112 1.51920 1.48154 1.05711 1.08738 1.69266 1.22237 1.02156 0.78393 0.99395 1.21725 0.95910 1.00607 0.97410 1.21228 0.95467 0.95504 0.98225 1.20833 0.95214 0.85047 0.95934 1.42560 1.62560 1.09174 1.24289 1.19577 1.23627 0.94583 0.99932 0.91000 1.25509 1.03346 0.97364 1.00437 1.69792 1.52144 1.08219 1.31634 0.85264 0.78902 0.76967 0.78947 1.20647 1.22151 1.20451 1.21858 1.00999 0.94893 0.97822 1.21870 0.85194 0.94518 0.99021 1.85088 1.22014 1.18757 1.68980 1.73998 0.91196 1.23178 1.24994 0.91208 0.91015 0.87931 0.91435 0.91741 0.77532 0.87939 0.88754 0.91469 0.92413 0.90656 0.96036 0.96871 0.79114 0.94023 0.88569 0.91751 0.88891 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.05 0.76 6.38 71.98 0.46 1.22 16 3 O -0.29 -5.89 10.21 -90.53 -0.92 -6.82 16 4 C 0.21 4.68 8.00 85.78 0.69 5.36 16 5 C -0.15 -3.09 10.97 22.80 0.25 -2.84 16 6 C -0.06 -1.43 6.98 24.36 0.17 -1.26 16 7 C 0.61 14.71 7.69 86.70 0.67 15.38 16 8 O -0.54 -15.12 16.34 -3.95 -0.06 -15.19 16 9 N -0.59 -13.07 2.98 -823.49 -2.45 -15.52 16 10 C 0.10 2.27 6.30 86.22 0.54 2.82 16 11 C -0.12 -3.33 5.23 30.53 0.16 -3.17 16 12 C -0.09 -2.42 2.19 -10.77 -0.02 -2.44 16 13 C 0.16 5.92 5.65 86.38 0.49 6.41 16 14 N -0.74 -36.61 5.32 -343.45 -1.83 -38.44 16 15 C -0.25 -13.57 9.99 84.03 0.84 -12.73 16 16 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 17 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 18 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 19 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 C -0.12 -2.54 5.36 30.67 0.16 -2.37 16 24 C 0.11 2.25 6.42 86.36 0.55 2.80 16 25 O 0.11 2.74 7.74 65.62 0.51 3.24 16 26 N -0.41 -10.12 11.50 -172.00 -1.98 -12.10 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.21 3.42 8.06 -2.91 -0.02 3.39 16 33 H 0.10 2.34 3.83 -46.44 -0.18 2.17 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.27 7.15 -2.39 -0.02 2.25 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.38 19.45 6.84 -92.70 -0.63 18.82 16 41 H 0.25 14.75 8.31 -92.70 -0.77 13.97 16 42 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.09 1.54 8.14 -2.38 -0.02 1.53 16 45 H 0.10 1.92 7.03 -2.39 -0.02 1.91 16 Total: -1.00 -67.62 369.86 1.94 -65.68 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.21 Total: 24.56 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.17 Total: 4.75 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -5.97 Total: -124.14 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.48 Total: -18.76 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -67.62 1.94 -65.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205707272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.666 kcal (2) G-P(sol) polarization free energy of solvation -67.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds