Wall clock time and date at job start Tue Mar 31 2020 14:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35699 * 116.99922 * 2 1 4 4 C 1.41933 * 126.87998 * 179.97438 * 3 2 1 5 5 C 1.35264 * 103.96353 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.70743 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47028 * 90.00533 * 6 5 4 8 8 C 1.50705 * 109.47028 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00079 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99715 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99794 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.88654 * 37.42485 * 11 10 8 13 13 C 1.54912 * 111.00258 * 273.54330 * 11 10 8 14 14 N 1.47426 * 104.83023 * 204.87571 * 13 11 10 15 15 C 1.36942 * 125.64723 * 204.09048 * 14 13 11 16 16 H 1.08001 * 119.99606 * 168.16098 * 15 14 13 17 17 C 1.38816 * 119.99979 * 348.16669 * 15 14 13 18 18 N 1.31619 * 119.99549 * 326.25223 * 17 15 14 19 19 Si 1.86798 * 119.99876 * 145.98230 * 17 15 14 20 20 H 1.48493 * 109.47224 * 59.99521 * 19 17 15 21 21 H 1.48498 * 109.46688 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46793 * 299.99425 * 19 17 15 23 23 C 1.47024 * 108.70412 * 24.36134 * 14 13 11 24 24 C 1.54331 * 107.26485 * 358.58104 * 23 14 13 25 25 H 1.08996 * 110.66820 * 96.52184 * 24 23 14 26 26 C 1.52998 * 110.85278 * 219.67552 * 24 23 14 27 27 O 1.34079 * 106.58245 * 0.24119 * 5 4 3 28 28 N 1.20917 * 111.71615 * 359.56931 * 27 5 4 29 29 H 1.09001 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46913 * 299.99730 * 1 2 3 31 31 H 1.08994 * 109.47314 * 59.99774 * 1 2 3 32 32 H 1.08008 * 128.01458 * 0.02562 * 4 3 2 33 33 H 1.08996 * 109.47030 * 329.99963 * 6 5 4 34 34 H 1.09006 * 109.47096 * 209.99650 * 6 5 4 35 35 H 1.08996 * 109.47681 * 59.99828 * 7 6 5 36 36 H 1.09007 * 109.47193 * 299.99623 * 7 6 5 37 37 H 0.97002 * 120.00483 * 359.97438 * 10 8 7 38 38 H 1.08998 * 110.36593 * 86.04321 * 13 11 10 39 39 H 1.08997 * 110.46484 * 323.76420 * 13 11 10 40 40 H 0.97003 * 120.00486 * 353.97561 * 18 17 15 41 41 H 1.09001 * 109.88261 * 118.12611 * 23 14 13 42 42 H 1.08999 * 109.87760 * 239.29600 * 23 14 13 43 43 H 1.09000 * 109.47248 * 173.69238 * 26 24 23 44 44 H 1.08999 * 109.46789 * 293.69496 * 26 24 23 45 45 H 1.08999 * 109.46849 * 53.69174 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4526 0.0005 5 6 3.5397 2.8019 0.0009 6 6 4.8090 3.6144 0.0020 7 6 5.2395 3.8897 -1.4401 8 6 6.5084 4.7027 -1.4390 9 8 7.0179 5.0301 -0.3882 10 7 7.0770 5.0660 -2.6056 11 6 8.3102 5.8568 -2.6046 12 1 8.9705 5.5460 -1.7949 13 6 7.9983 7.3717 -2.5162 14 7 9.1688 8.0338 -3.1203 15 6 9.5776 9.3166 -2.8699 16 1 10.5472 9.6502 -3.2089 17 6 8.7457 10.1880 -2.1802 18 7 7.4404 10.1080 -2.3290 19 14 9.4786 11.4691 -1.0352 20 1 10.3774 12.3654 -1.8058 21 1 8.3869 12.2695 -0.4246 22 1 10.2539 10.7911 0.0346 23 6 9.8207 7.0911 -4.0411 24 6 9.0309 5.7667 -3.9757 25 1 8.3072 5.7098 -4.7887 26 6 9.9779 4.5656 -4.0115 27 8 2.2852 3.2750 0.0060 28 7 1.4701 2.3819 0.0002 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.2447 0.7285 0.0006 33 1 5.5943 3.0606 0.5163 34 1 4.6347 4.5598 0.5159 35 1 4.4541 4.4435 -1.9544 36 1 5.4137 2.9444 -1.9541 37 1 6.6697 4.8039 -3.4461 38 1 7.8857 7.6757 -1.4755 39 1 7.0957 7.6084 -3.0795 40 1 7.0633 9.5007 -2.9847 41 1 9.7983 7.4886 -5.0558 42 1 10.8514 6.9216 -3.7297 43 1 9.4091 3.6496 -3.8518 44 1 10.4725 4.5217 -4.9818 45 1 10.7267 4.6698 -3.2263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207171660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:20 Heat of formation + Delta-G solvation = 8.467853 kcal Electronic energy + Delta-G solvation = -26911.932466 eV Core-core repulsion = 22934.072067 eV Total energy + Delta-G solvation = -3977.860400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.14591 -39.81100 -39.14073 -37.84570 -34.91502 -34.13141 -33.09374 -32.82803 -30.69130 -30.39698 -28.15981 -27.81052 -25.56080 -25.19339 -23.67718 -23.35442 -21.42618 -20.66501 -20.22958 -19.57991 -18.23414 -17.92982 -17.52527 -17.03572 -16.75439 -16.07668 -15.78654 -15.71334 -15.29479 -14.60144 -14.32868 -14.06558 -13.73531 -13.66932 -13.43371 -13.07100 -12.94559 -12.82091 -12.56169 -12.51876 -12.40322 -12.20622 -11.82507 -11.67094 -11.51333 -11.16724 -10.87610 -10.71302 -10.63877 -10.42380 -10.09368 -9.95192 -9.93632 -9.67311 -9.62841 -9.47028 -8.70729 -8.31224 -6.95761 -6.13116 -3.06873 1.13238 1.98709 2.44225 2.77193 2.80765 3.35831 3.53734 3.60741 3.77114 3.92853 4.46715 4.60669 4.62593 4.65632 4.73260 4.76408 4.79705 4.91242 5.01366 5.10176 5.16597 5.18223 5.24907 5.28824 5.33436 5.48920 5.63403 5.66930 5.77725 5.81579 5.85443 5.97653 6.04085 6.20778 6.28477 6.56698 6.59640 6.64638 6.79192 6.98675 7.08583 7.67884 7.80688 7.97199 8.38219 8.50434 9.01578 9.83616 10.37765 11.21125 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.002395 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.385268 B =11689.385915 C =12819.670072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.206 3.794 4 C -0.235 4.235 5 C 0.006 3.994 6 C -0.028 4.028 7 C -0.138 4.138 8 C 0.513 3.487 9 O -0.535 6.535 10 N -0.716 5.716 11 C 0.130 3.870 12 H 0.094 0.906 13 C 0.141 3.859 14 N -0.601 5.601 15 C -0.346 4.346 16 H 0.068 0.932 17 C -0.020 4.020 18 N -0.905 5.905 19 Si 1.056 2.944 20 H -0.293 1.293 21 H -0.286 1.286 22 H -0.293 1.293 23 C 0.142 3.858 24 C -0.110 4.110 25 H 0.075 0.925 26 C -0.137 4.137 27 O 0.102 5.898 28 N -0.411 5.411 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.179 0.821 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.397 0.603 38 H 0.057 0.943 39 H 0.024 0.976 40 H 0.267 0.733 41 H 0.024 0.976 42 H 0.030 0.970 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 -21.533 0.263 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.257 4.257 5 C -0.057 4.057 6 C -0.066 4.066 7 C -0.178 4.178 8 C 0.299 3.701 9 O -0.411 6.411 10 N -0.366 5.366 11 C 0.025 3.975 12 H 0.112 0.888 13 C 0.014 3.986 14 N -0.328 5.328 15 C -0.473 4.473 16 H 0.086 0.914 17 C -0.223 4.223 18 N -0.545 5.545 19 Si 0.885 3.115 20 H -0.220 1.220 21 H -0.211 1.211 22 H -0.220 1.220 23 C 0.016 3.984 24 C -0.130 4.130 25 H 0.093 0.907 26 C -0.195 4.195 27 O 0.042 5.958 28 N -0.138 5.138 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.196 0.804 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.231 0.769 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.005 -19.870 2.133 22.348 hybrid contribution 0.515 -1.755 -1.727 2.515 sum -9.490 -21.624 0.406 23.618 Atomic orbital electron populations 1.23061 0.76870 1.04027 1.02395 1.86183 1.22562 1.21004 1.89435 1.22033 0.90982 0.85705 1.00417 1.21805 0.94243 0.95712 1.13961 1.24403 0.88317 0.93204 0.99814 1.19973 0.88464 1.00814 0.97369 1.21647 0.96804 1.01605 0.97784 1.20369 0.85586 0.80093 0.84087 1.90753 1.63970 1.55363 1.31020 1.45908 1.27394 1.55109 1.08201 1.22393 0.84692 0.92759 0.97684 0.88762 1.21775 0.90569 0.87818 0.98422 1.44465 1.30692 1.10645 1.47025 1.19661 1.01242 0.87378 1.39054 0.91421 1.25672 0.94681 1.00141 1.01793 1.70800 1.11825 1.35701 1.36140 0.83663 0.75182 0.75594 0.77024 1.22027 1.21116 1.22036 1.21357 0.95344 0.87911 0.93833 1.22423 0.97892 0.96167 0.96486 0.90658 1.21736 0.99131 0.96823 1.01785 1.84833 1.12307 1.29928 1.68778 1.74153 1.15779 0.96696 1.27158 0.87693 0.92255 0.92244 0.80398 0.87216 0.87787 0.88113 0.88402 0.76924 0.92488 0.95807 0.92197 0.95779 0.95207 0.92985 0.92662 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.73 101.05 1.08 1.31 16 2 O -0.29 -2.92 10.57 -18.80 -0.20 -3.11 16 3 C 0.21 2.32 8.01 -16.66 -0.13 2.18 16 4 C -0.24 -2.21 11.10 -39.23 -0.44 -2.64 16 5 C 0.01 0.06 6.73 -35.37 -0.24 -0.18 16 6 C -0.03 -0.25 5.07 -27.88 -0.14 -0.40 16 7 C -0.14 -1.24 5.68 -27.88 -0.16 -1.40 16 8 C 0.51 7.07 7.83 -10.98 -0.09 6.98 16 9 O -0.53 -9.75 15.73 5.56 0.09 -9.66 16 10 N -0.72 -9.72 5.23 -51.72 -0.27 -9.99 16 11 C 0.13 2.29 2.77 -65.78 -0.18 2.11 16 12 H 0.09 1.83 7.63 -51.93 -0.40 1.43 16 13 C 0.14 3.31 5.03 -2.53 -0.01 3.30 16 14 N -0.60 -15.31 3.33 -170.06 -0.57 -15.88 16 15 C -0.35 -9.93 9.97 -15.06 -0.15 -10.08 16 16 H 0.07 1.93 8.02 -52.49 -0.42 1.51 16 17 C -0.02 -0.59 4.96 -17.43 -0.09 -0.68 16 18 N -0.91 -27.73 12.86 55.49 0.71 -27.02 16 19 Si 1.06 25.91 30.03 -169.99 -5.10 20.80 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.14 2.87 6.85 -3.06 -0.02 2.85 16 24 C -0.11 -1.72 3.16 -88.78 -0.28 -2.00 16 25 H 0.08 1.07 7.99 -51.93 -0.42 0.65 16 26 C -0.14 -1.71 9.16 37.16 0.34 -1.36 16 27 O 0.10 1.19 11.19 17.07 0.19 1.39 16 28 N -0.41 -5.06 11.54 30.38 0.35 -4.71 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.18 1.23 8.06 -52.48 -0.42 0.80 16 33 H 0.11 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.40 4.09 8.52 -40.82 -0.35 3.74 16 38 H 0.06 1.56 7.81 -51.93 -0.41 1.16 16 39 H 0.02 0.59 7.02 -51.93 -0.36 0.23 16 40 H 0.27 8.19 6.43 -40.82 -0.26 7.93 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.03 0.60 7.77 -51.93 -0.40 0.20 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -35.57 377.49 -6.49 -42.06 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.88 Total: 0.44 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.50 Total: 0.00 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.23 Total: -57.60 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.10 Total: 20.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.57 -6.49 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207171660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.527 kcal (2) G-P(sol) polarization free energy of solvation -35.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds