Wall clock time and date at job start Tue Mar 31 2020 13:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46946 * 2 1 4 4 H 1.08996 * 109.46924 * 305.84998 * 3 2 1 5 5 C 1.50700 * 109.46908 * 185.85008 * 3 2 1 6 6 H 1.08000 * 119.99977 * 240.00175 * 5 3 2 7 7 C 1.37885 * 120.00099 * 60.00226 * 5 3 2 8 8 N 1.31511 * 119.99658 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00037 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47319 * 59.99695 * 9 7 5 11 11 H 1.48495 * 109.47021 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47048 * 300.00033 * 9 7 5 13 13 N 1.46900 * 109.46851 * 65.85383 * 3 2 1 14 14 C 1.46899 * 110.99702 * 210.55152 * 13 3 2 15 15 C 1.53122 * 109.52496 * 271.50805 * 14 13 3 16 16 C 1.53041 * 109.27666 * 182.50480 * 15 14 13 17 17 N 1.46852 * 109.57409 * 59.08275 * 16 15 14 18 18 C 1.39069 * 110.99412 * 174.19271 * 17 16 15 19 19 N 1.32389 * 119.71656 * 60.17268 * 18 17 16 20 20 C 1.31962 * 121.63839 * 179.97438 * 19 18 17 21 21 C 1.38049 * 120.87514 * 359.97438 * 20 19 18 22 22 C 1.38844 * 119.33833 * 0.02562 * 21 20 19 23 23 C 1.38418 * 118.49631 * 359.72754 * 22 21 20 24 24 Cl 1.73601 * 120.46360 * 180.26237 * 23 22 21 25 25 C 1.46846 * 111.19653 * 298.29023 * 17 16 15 26 26 C 1.53036 * 109.52419 * 61.74527 * 25 17 16 27 27 H 1.09006 * 109.46957 * 302.62566 * 1 2 3 28 28 H 1.09004 * 109.47308 * 62.62807 * 1 2 3 29 29 H 1.09001 * 109.46812 * 182.62872 * 1 2 3 30 30 H 1.09003 * 109.47163 * 240.00284 * 2 1 3 31 31 H 1.08999 * 109.47592 * 120.00293 * 2 1 3 32 32 H 0.96999 * 119.99669 * 179.97438 * 8 7 5 33 33 H 1.00896 * 110.99950 * 334.50416 * 13 3 2 34 34 H 1.09001 * 109.52153 * 31.63587 * 14 13 3 35 35 H 1.09000 * 109.49991 * 302.38571 * 15 14 13 36 36 H 1.08999 * 109.49787 * 62.49886 * 15 14 13 37 37 H 1.09002 * 109.40854 * 299.06943 * 16 15 14 38 38 H 1.08996 * 109.46008 * 179.13276 * 16 15 14 39 39 H 1.07998 * 119.55878 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.32664 * 180.02562 * 21 20 19 41 41 H 1.08000 * 120.74973 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.46491 * 301.72246 * 25 17 16 43 43 H 1.09001 * 109.44873 * 181.75676 * 25 17 16 44 44 H 1.08995 * 109.49906 * 180.87693 * 26 25 17 45 45 H 1.09001 * 109.50403 * 60.76044 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5936 1.9857 -0.8330 5 6 3.5400 1.4450 -0.1448 6 1 4.1561 1.8857 0.6250 7 6 4.1259 0.8846 -1.2601 8 7 3.3756 0.3475 -2.1972 9 14 5.9852 0.8883 -1.4399 10 1 6.5937 0.1488 -0.3051 11 1 6.3602 0.2312 -2.7177 12 1 6.4797 2.2886 -1.4402 13 7 1.6690 2.0930 1.2638 14 6 1.4593 3.5343 1.0723 15 6 2.7880 4.2734 1.2539 16 6 2.5517 5.7790 1.1151 17 7 1.5820 6.2201 2.1260 18 6 1.4428 7.6037 2.1126 19 7 1.0249 8.2106 1.0128 20 6 0.8788 9.5210 0.9582 21 6 1.1585 10.3113 2.0549 22 6 1.5996 9.7148 3.2286 23 6 1.7383 8.3379 3.2579 24 17 2.2794 7.5383 4.7006 25 6 0.2841 5.5587 1.9409 26 6 0.4524 4.0466 2.1059 27 1 -0.3633 0.5541 0.8656 28 1 -0.3634 0.4725 -0.9126 29 1 -0.3633 -1.0266 0.0471 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.7878 -0.0464 -2.9820 33 1 0.8524 1.6593 1.6676 34 1 1.0754 3.7163 0.0685 35 1 3.1914 4.0588 2.2435 36 1 3.4949 3.9432 0.4927 37 1 2.1623 5.9944 0.1201 38 1 3.4931 6.3091 1.2592 39 1 0.5360 9.9812 0.0433 40 1 1.0355 11.3830 2.0005 41 1 1.8254 10.3113 4.1001 42 1 -0.0947 5.7751 0.9420 43 1 -0.4213 5.9290 2.6848 44 1 -0.5082 3.5548 1.9530 45 1 0.8180 3.8285 3.1093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:43 Heat of formation + Delta-G solvation = 36.194269 kcal Electronic energy + Delta-G solvation = -25545.516982 eV Core-core repulsion = 22009.568054 eV Total energy + Delta-G solvation = -3535.948928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81631 -38.53677 -36.61058 -36.18429 -33.60318 -32.43641 -31.73473 -30.57300 -30.44971 -28.51965 -26.36362 -24.15254 -23.56175 -22.82080 -22.63778 -21.57372 -19.52563 -19.15119 -17.70837 -16.97892 -16.46021 -16.16198 -15.21021 -15.11689 -14.81667 -14.59981 -13.97200 -13.77250 -13.72777 -13.60420 -13.24315 -12.78201 -12.67972 -12.52344 -12.35230 -12.08436 -11.82585 -11.69730 -11.17819 -11.10084 -10.93646 -10.86155 -10.72940 -10.63496 -10.34933 -10.14818 -9.99858 -9.85652 -9.76888 -9.57862 -9.32618 -8.99550 -8.93639 -8.55040 -8.27477 -7.16643 -5.90855 -3.93798 0.66987 0.85023 2.00409 3.36088 3.37669 3.41797 3.45450 3.53722 4.29101 4.48338 4.49433 4.66677 4.81453 5.03345 5.06399 5.16311 5.32942 5.38187 5.52348 5.56211 5.67198 5.69435 5.79404 5.92703 6.01216 6.05206 6.17207 6.18782 6.20321 6.26737 6.39925 6.44384 6.53681 6.79667 6.87276 7.04365 7.11198 7.15246 7.25730 7.27515 7.56306 7.61256 7.83787 7.99646 8.40525 8.48516 8.83357 9.13940 9.70479 11.14482 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003296 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.710050 B = 8492.012193 C = 9013.767572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.487 4.487 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.682 5.682 14 C 0.100 3.900 15 C -0.100 4.100 16 C 0.064 3.936 17 N -0.482 5.482 18 C 0.313 3.687 19 N -0.495 5.495 20 C 0.111 3.889 21 C -0.171 4.171 22 C -0.068 4.068 23 C -0.063 4.063 24 Cl -0.036 7.036 25 C 0.071 3.929 26 C -0.119 4.119 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.259 0.741 33 H 0.318 0.682 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.160 0.840 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 18.424 9.718 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.526 4.526 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.313 5.313 14 C -0.011 4.011 15 C -0.138 4.138 16 C -0.062 4.062 17 N -0.206 5.206 18 C 0.084 3.916 19 N -0.207 5.207 20 C -0.048 4.048 21 C -0.191 4.191 22 C -0.095 4.095 23 C -0.094 4.094 24 Cl -0.007 7.007 25 C -0.056 4.056 26 C -0.157 4.157 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.177 0.823 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.193 17.633 9.584 21.003 hybrid contribution 0.070 0.729 -0.619 0.959 sum -6.123 18.362 8.965 21.331 Atomic orbital electron populations 1.21880 0.99695 0.99414 0.99686 1.21821 0.91164 1.00716 1.03027 1.19227 0.95502 0.89806 0.84241 0.97929 1.21227 0.91325 1.36068 1.03968 0.91848 1.24962 0.97831 0.95812 0.96019 1.69861 1.34630 1.39758 1.09569 0.86659 0.86118 0.78127 0.77064 1.20349 1.21595 1.20452 1.60727 1.39441 1.00690 1.30445 1.21406 0.93929 0.90114 0.95646 1.21646 0.98542 0.89887 1.03761 1.22218 0.93933 0.97946 0.92115 1.60264 1.10979 0.99007 1.50313 1.19877 0.92750 0.91577 0.87442 1.68033 1.13073 1.12356 1.27281 1.22712 0.94934 0.88673 0.98435 1.22118 1.01742 1.01809 0.93443 1.21523 0.96384 0.92374 0.99204 1.21773 1.04305 0.92995 0.90308 1.98388 1.87817 1.80145 1.34392 1.22020 0.88431 0.94838 1.00319 1.21853 0.99225 0.93134 1.01520 0.94671 0.93943 0.94508 0.88275 0.94147 0.93156 0.86407 0.94868 0.91097 0.89202 0.93546 0.91351 0.82297 0.83966 0.83700 0.93580 0.91428 0.91920 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.80 37.16 0.36 -2.53 16 2 C -0.13 -3.02 5.32 -26.73 -0.14 -3.16 16 3 C 0.22 5.38 2.03 -68.86 -0.14 5.24 16 4 H 0.00 0.09 7.29 -51.93 -0.38 -0.29 16 5 C -0.49 -13.17 7.55 -34.44 -0.26 -13.43 16 6 H 0.06 1.74 7.20 -52.49 -0.38 1.36 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.52 11.29 55.43 0.63 -24.89 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.68 -14.19 6.17 -100.82 -0.62 -14.81 16 14 C 0.10 1.85 2.57 -67.59 -0.17 1.67 16 15 C -0.10 -1.84 5.32 -26.65 -0.14 -1.99 16 16 C 0.06 1.04 5.24 -3.83 -0.02 1.02 16 17 N -0.48 -7.07 4.03 -173.19 -0.70 -7.76 16 18 C 0.31 4.24 5.30 -154.94 -0.82 3.42 16 19 N -0.50 -6.51 9.74 -12.40 -0.12 -6.63 16 20 C 0.11 1.06 11.17 -17.56 -0.20 0.86 16 21 C -0.17 -1.30 10.10 -39.43 -0.40 -1.70 16 22 C -0.07 -0.59 9.97 -39.29 -0.39 -0.99 16 23 C -0.06 -0.74 6.36 -39.15 -0.25 -0.99 16 24 Cl -0.04 -0.43 28.47 -51.86 -1.48 -1.91 16 25 C 0.07 1.01 5.28 -3.83 -0.02 0.99 16 26 C -0.12 -1.79 5.33 -26.65 -0.14 -1.94 16 27 H 0.03 0.61 6.45 -51.93 -0.33 0.27 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 2.63 5.93 -51.93 -0.31 2.32 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.32 6.10 6.07 -39.29 -0.24 5.86 16 34 H 0.03 0.69 7.31 -51.93 -0.38 0.31 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.91 6.55 -51.93 -0.34 1.57 16 37 H 0.05 0.79 8.00 -51.93 -0.42 0.38 16 38 H 0.07 1.08 8.10 -51.93 -0.42 0.65 16 39 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.05 0.70 8.06 -51.93 -0.42 0.28 16 43 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 367.60 15.07 5.54 5.54 Total: -1.00 -29.11 367.60 -11.57 -40.68 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.97 Total: 5.39 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -2.83 Total: -12.13 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.82 Total: -54.09 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.11 -11.57 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.877 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds