Wall clock time and date at job start Tue Mar 31 2020 13:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47489 * 2 1 4 4 H 1.09006 * 109.46636 * 54.01053 * 3 2 1 5 5 C 1.50696 * 109.47492 * 174.01037 * 3 2 1 6 6 H 1.07997 * 119.99842 * 120.00185 * 5 3 2 7 7 C 1.37877 * 120.00044 * 300.00479 * 5 3 2 8 8 N 1.31514 * 119.99691 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00004 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47134 * 90.00070 * 9 7 5 11 11 H 1.48497 * 109.47174 * 210.00095 * 9 7 5 12 12 H 1.48501 * 109.47108 * 330.00134 * 9 7 5 13 13 N 1.46897 * 109.47220 * 294.01484 * 3 2 1 14 14 C 1.46904 * 111.00530 * 137.94948 * 13 3 2 15 15 C 1.53115 * 109.52501 * 208.88428 * 14 13 3 16 16 C 1.53037 * 109.27506 * 182.37727 * 15 14 13 17 17 N 1.46843 * 109.52513 * 59.18019 * 16 15 14 18 18 C 1.39077 * 111.00194 * 174.16122 * 17 16 15 19 19 N 1.32392 * 119.70897 * 37.74255 * 18 17 16 20 20 C 1.31959 * 121.63434 * 179.97438 * 19 18 17 21 21 C 1.38054 * 120.87848 * 0.02562 * 20 19 18 22 22 C 1.38843 * 119.33571 * 0.26823 * 21 20 19 23 23 C 1.38424 * 118.49352 * 359.44084 * 22 21 20 24 24 Cl 1.73599 * 120.46173 * 180.25869 * 23 22 21 25 25 C 1.46844 * 111.19817 * 298.25460 * 17 16 15 26 26 C 1.53036 * 109.52385 * 61.74136 * 25 17 16 27 27 H 1.09001 * 109.46979 * 185.20116 * 1 2 3 28 28 H 1.09002 * 109.47025 * 305.19647 * 1 2 3 29 29 H 1.08994 * 109.47234 * 65.19964 * 1 2 3 30 30 H 1.09005 * 109.47114 * 239.99885 * 2 1 3 31 31 H 1.08999 * 109.47055 * 120.00856 * 2 1 3 32 32 H 0.97009 * 119.99613 * 180.02562 * 8 7 5 33 33 H 1.00905 * 111.00199 * 13.99768 * 13 3 2 34 34 H 1.08999 * 109.51945 * 329.01565 * 14 13 3 35 35 H 1.09002 * 109.50253 * 62.44079 * 15 14 13 36 36 H 1.08991 * 109.50428 * 302.31844 * 15 14 13 37 37 H 1.09003 * 109.46493 * 299.16358 * 16 15 14 38 38 H 1.09000 * 109.45452 * 179.19101 * 16 15 14 39 39 H 1.08001 * 119.56468 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.33567 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.75692 * 179.72560 * 22 21 20 42 42 H 1.08997 * 109.46540 * 181.75446 * 25 17 16 43 43 H 1.09001 * 109.46972 * 301.72589 * 25 17 16 44 44 H 1.09000 * 109.51008 * 180.87459 * 26 25 17 45 45 H 1.09012 * 109.50035 * 60.76204 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5918 1.9863 0.8316 5 6 3.5397 1.4450 0.1483 6 1 4.1575 1.8852 -0.6204 7 6 4.1230 0.8854 1.2652 8 7 5.4318 0.8873 1.3943 9 14 3.0543 0.1247 2.5951 10 1 2.8374 -1.3131 2.2936 11 1 3.7308 0.2581 3.9103 12 1 1.7452 0.8244 2.6386 13 7 1.6719 2.0920 -1.2651 14 6 1.1993 3.4637 -1.0346 15 6 0.1993 3.8508 -2.1276 16 6 -0.2442 5.3002 -1.9163 17 7 0.9275 6.1839 -1.9646 18 6 0.5466 7.5203 -1.9070 19 7 -0.4633 7.8818 -1.1310 20 6 -0.8562 9.1388 -1.0472 21 6 -0.2233 10.1288 -1.7719 22 6 0.8366 9.7915 -2.6028 23 6 1.2305 8.4660 -2.6656 24 17 2.5540 7.9884 -3.6826 25 6 1.8800 5.8618 -0.8945 26 6 2.3870 4.4292 -1.0752 27 1 -0.3633 -1.0234 0.0932 28 1 -0.3633 0.5923 0.8398 29 1 -0.3633 0.4310 -0.9328 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 5.8422 0.4932 2.1800 33 1 0.9809 1.5502 -1.7621 34 1 0.7148 3.5231 -0.0600 35 1 -0.6687 3.1935 -2.0761 36 1 0.6725 3.7538 -3.1047 37 1 -0.7297 5.3935 -0.9448 38 1 -0.9454 5.5834 -2.7013 39 1 -1.6845 9.3964 -0.4037 40 1 -0.5519 11.1548 -1.6963 41 1 1.3453 10.5468 -3.1834 42 1 2.7218 6.5529 -0.9373 43 1 1.3847 5.9524 0.0722 44 1 3.0822 4.1850 -0.2720 45 1 2.8947 4.3413 -2.0359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:45 Heat of formation + Delta-G solvation = 24.602320 kcal Electronic energy + Delta-G solvation = -25600.603305 eV Core-core repulsion = 22064.151713 eV Total energy + Delta-G solvation = -3536.451592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74480 -39.86382 -38.00182 -37.48048 -35.15976 -34.01306 -33.24725 -31.91424 -31.80435 -29.97946 -28.68818 -25.25905 -24.72246 -24.15185 -23.87036 -22.85635 -21.63351 -20.70529 -18.73106 -18.64377 -17.82958 -17.24680 -17.09880 -16.37509 -16.27714 -15.86425 -15.70992 -15.15266 -15.11390 -14.76787 -14.59698 -14.42671 -14.14625 -14.00691 -13.58412 -13.53752 -13.33402 -13.10429 -12.94904 -12.85229 -12.54920 -12.37109 -12.18275 -12.12225 -12.06339 -11.92352 -11.48628 -11.39936 -11.14705 -11.09404 -10.83158 -10.67865 -10.61435 -10.10053 -9.39290 -8.99701 -8.22799 -6.22315 -0.09920 0.12412 1.16971 1.27750 1.33383 1.42752 2.33208 2.45263 2.64562 3.09296 3.38081 3.51568 3.77910 3.86353 3.89208 3.99865 4.14339 4.23027 4.25643 4.28354 4.32967 4.38568 4.42054 4.43683 4.60654 4.64860 4.72552 4.81331 4.83834 4.88776 4.96699 5.03056 5.07978 5.10643 5.12111 5.18072 5.33187 5.42163 5.45231 5.52335 5.75456 5.79449 6.14882 6.17047 6.63695 6.82583 6.85441 6.99236 7.41412 8.94605 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.003246 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.266581 B = 8624.747986 C = 9027.103721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.198 3.802 4 H -0.002 1.002 5 C -0.487 4.487 6 H 0.035 0.965 7 C 0.006 3.994 8 N -0.953 5.953 9 Si 0.944 3.056 10 H -0.266 1.266 11 H -0.302 1.302 12 H -0.252 1.252 13 N -0.677 5.677 14 C 0.098 3.902 15 C -0.108 4.108 16 C 0.078 3.922 17 N -0.482 5.482 18 C 0.288 3.712 19 N -0.525 5.525 20 C 0.106 3.894 21 C -0.156 4.156 22 C -0.061 4.061 23 C -0.087 4.087 24 Cl -0.051 7.051 25 C 0.082 3.918 26 C -0.091 4.091 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.262 0.738 33 H 0.338 0.662 34 H 0.025 0.975 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.189 0.811 40 H 0.184 0.816 41 H 0.171 0.829 42 H 0.072 0.928 43 H 0.033 0.967 44 H 0.046 0.954 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.226 18.728 -7.808 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.088 3.912 4 H 0.016 0.984 5 C -0.526 4.526 6 H 0.054 0.946 7 C -0.190 4.190 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.192 1.192 11 H -0.230 1.230 12 H -0.176 1.176 13 N -0.309 5.309 14 C -0.012 4.012 15 C -0.146 4.146 16 C -0.050 4.050 17 N -0.204 5.204 18 C 0.058 3.942 19 N -0.238 5.238 20 C -0.052 4.052 21 C -0.176 4.176 22 C -0.088 4.088 23 C -0.118 4.118 24 Cl -0.022 7.022 25 C -0.045 4.045 26 C -0.129 4.129 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.042 0.958 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.206 0.794 40 H 0.201 0.799 41 H 0.189 0.811 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.516 18.049 -7.904 25.710 hybrid contribution -0.097 -0.160 1.397 1.410 sum -16.613 17.888 -6.507 25.265 Atomic orbital electron populations 1.21830 0.94373 1.02320 1.01965 1.22173 0.96370 0.98669 1.00980 1.19495 0.93645 0.90640 0.87401 0.98448 1.21363 0.91793 1.35337 1.04085 0.94643 1.25783 0.95833 0.97016 1.00378 1.70059 1.11190 1.48119 1.30099 0.85928 0.79499 0.79574 0.77796 1.19226 1.23042 1.17616 1.60339 1.45875 1.02291 1.22394 1.21509 0.93823 0.89261 0.96580 1.21773 0.98486 0.95213 0.99175 1.21897 0.90373 0.91381 1.01308 1.59902 1.15423 0.99355 1.45721 1.19797 0.91627 0.90727 0.92015 1.67926 1.15211 1.22577 1.18098 1.23300 0.98604 0.86649 0.96634 1.22536 0.95547 1.03044 0.96446 1.21907 0.96078 0.93466 0.97346 1.21863 0.95511 0.95326 0.99087 1.98388 1.45064 1.92547 1.66178 1.21937 0.94574 0.97304 0.90640 1.21400 0.97803 0.91896 1.01835 0.91324 0.93634 0.91075 0.91651 0.94411 0.92910 0.84193 0.95754 0.89483 0.90556 0.93689 0.89957 0.79426 0.79875 0.81146 0.90922 0.94919 0.93507 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.71 71.98 0.70 -3.80 16 2 C -0.14 -5.86 4.86 30.59 0.15 -5.72 16 3 C 0.20 9.14 1.67 44.17 0.07 9.21 16 4 H 0.00 -0.10 6.19 -2.38 -0.01 -0.11 16 5 C -0.49 -28.25 9.02 25.60 0.23 -28.02 16 6 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 7 C 0.01 0.35 5.45 84.65 0.46 0.81 16 8 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 9 Si 0.94 46.00 24.42 68.60 1.67 47.67 16 10 H -0.27 -12.29 6.82 99.48 0.68 -11.61 16 11 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 12 H -0.25 -11.45 6.53 99.48 0.65 -10.80 16 13 N -0.68 -26.86 6.17 -472.91 -2.92 -29.77 16 14 C 0.10 3.46 2.55 44.99 0.11 3.58 16 15 C -0.11 -2.93 5.32 30.65 0.16 -2.77 16 16 C 0.08 2.03 4.95 86.33 0.43 2.46 16 17 N -0.48 -13.61 4.03 -701.87 -2.83 -16.44 16 18 C 0.29 7.33 5.55 133.06 0.74 8.07 16 19 N -0.52 -12.25 9.28 -193.14 -1.79 -14.05 16 20 C 0.11 1.60 11.17 84.63 0.95 2.55 16 21 C -0.16 -1.69 10.10 22.37 0.23 -1.46 16 22 C -0.06 -0.89 9.97 22.46 0.22 -0.67 16 23 C -0.09 -1.92 6.36 22.55 0.14 -1.78 16 24 Cl -0.05 -1.21 28.47 -2.72 -0.08 -1.29 16 25 C 0.08 2.63 5.40 86.33 0.47 3.10 16 26 C -0.09 -3.44 5.67 30.65 0.17 -3.26 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.85 6.82 -2.39 -0.02 1.83 16 30 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 31 H 0.04 1.66 3.22 -2.39 -0.01 1.66 16 32 H 0.26 15.82 8.31 -92.70 -0.77 15.04 16 33 H 0.34 11.44 6.27 -89.69 -0.56 10.87 16 34 H 0.02 0.92 7.25 -2.39 -0.02 0.90 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.04 1.24 7.80 -2.39 -0.02 1.22 16 38 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 39 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 41 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.07 2.31 8.10 -2.39 -0.02 2.29 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.05 2.13 7.74 -2.39 -0.02 2.11 16 45 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -71.85 363.58 -0.07 -71.91 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.34 Total: 20.51 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.24 Total: -17.71 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -7.24 Total: -121.09 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -71.85 -0.07 -71.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.517 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds