Wall clock time and date at job start Tue Mar 31 2020 14:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 115.54982 * 2 1 4 4 C 1.52999 * 117.50000 * 214.29831 * 2 1 3 5 5 C 1.52996 * 117.50077 * 145.67225 * 2 1 3 6 6 H 1.09004 * 117.49743 * 359.97438 * 5 2 1 7 7 C 1.50703 * 117.49973 * 214.97730 * 5 2 1 8 8 N 1.30269 * 126.28464 * 299.97591 * 7 5 2 9 9 N 1.28667 * 109.38088 * 179.97438 * 8 7 5 10 10 C 1.30272 * 109.38259 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.28409 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47414 * 195.02222 * 11 10 9 13 13 C 1.50706 * 109.47541 * 75.01662 * 11 10 9 14 14 H 1.08002 * 119.99902 * 119.99932 * 13 11 10 15 15 C 1.37876 * 119.99850 * 300.00382 * 13 11 10 16 16 N 1.31513 * 119.99908 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99640 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47190 * 60.00141 * 17 15 13 19 19 H 1.48509 * 109.46918 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47230 * 299.99823 * 17 15 13 21 21 N 1.46504 * 109.47095 * 315.01955 * 11 10 9 22 22 C 1.34771 * 120.00294 * 205.00318 * 21 11 10 23 23 O 1.21515 * 120.00158 * 359.97438 * 22 21 11 24 24 O 1.34637 * 120.00399 * 179.97438 * 22 21 11 25 25 C 1.45194 * 117.00311 * 179.97438 * 24 22 21 26 26 C 1.53006 * 109.46979 * 60.00565 * 25 24 22 27 27 C 1.52997 * 109.47240 * 300.00529 * 25 24 22 28 28 C 1.52999 * 109.47457 * 180.02562 * 25 24 22 29 29 O 1.34357 * 107.43476 * 0.23322 * 10 9 8 30 30 H 1.09002 * 109.46632 * 274.32766 * 1 2 3 31 31 H 1.08991 * 109.47116 * 34.32746 * 1 2 3 32 32 H 1.09002 * 109.46725 * 154.33022 * 1 2 3 33 33 H 1.08999 * 117.50270 * 145.02364 * 4 2 1 34 34 H 1.08998 * 117.49633 * 359.97438 * 4 2 1 35 35 H 0.97002 * 119.99708 * 179.97438 * 16 15 13 36 36 H 0.97003 * 119.99776 * 24.99884 * 21 11 10 37 37 H 1.09001 * 109.47002 * 299.99655 * 26 25 24 38 38 H 1.08993 * 109.46955 * 60.00092 * 26 25 24 39 39 H 1.09000 * 109.47050 * 179.97438 * 26 25 24 40 40 H 1.09000 * 109.47140 * 179.97438 * 27 25 24 41 41 H 1.09001 * 109.47230 * 299.99118 * 27 25 24 42 42 H 1.09001 * 109.47375 * 59.99957 * 27 25 24 43 43 H 1.09001 * 109.47362 * 300.00827 * 28 25 24 44 44 H 1.09002 * 109.46716 * 60.00187 * 28 25 24 45 45 H 1.09000 * 109.47486 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1211 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 1.6112 -1.8578 1.2692 7 6 3.5294 -0.7806 1.4610 8 7 4.6144 -0.3332 0.8958 9 7 5.5194 -0.1523 1.7923 10 6 5.0427 -0.4787 2.9599 11 6 5.7787 -0.4145 4.2734 12 1 5.2344 -0.9885 5.0233 13 6 5.8857 1.0210 4.7197 14 1 5.4521 1.3278 5.6601 15 6 6.5371 1.9424 3.9275 16 7 7.0654 1.5686 2.7827 17 14 6.6691 3.7218 4.4805 18 1 7.3941 3.7854 5.7749 19 1 7.4103 4.5040 3.4585 20 1 5.3076 4.2907 4.6471 21 7 7.1217 -0.9760 4.1085 22 6 7.7723 -1.4900 5.1710 23 8 7.2452 -1.4873 6.2659 24 8 9.0064 -2.0065 5.0195 25 6 9.6474 -2.5421 6.2071 26 6 8.7946 -3.6762 6.7794 27 6 9.7908 -1.4344 7.2527 28 6 11.0322 -3.0796 5.8410 29 8 3.7762 -0.8885 2.7774 30 1 -0.3633 0.0776 1.0248 31 1 -0.3633 0.8486 -0.5795 32 1 -0.3633 -0.9263 -0.4452 33 1 3.1716 -0.8755 -1.2680 34 1 1.6112 -1.8590 -1.2675 35 1 7.5233 2.2170 2.2252 36 1 7.5427 -0.9779 3.2346 37 1 7.8081 -3.2930 7.0404 38 1 8.6924 -4.4653 6.0345 39 1 9.2759 -4.0786 7.6707 40 1 10.2716 -1.8365 8.1445 41 1 10.3985 -0.6264 6.8451 42 1 8.8044 -1.0511 7.5137 43 1 10.9304 -3.8686 5.0958 44 1 11.6395 -2.2713 5.4335 45 1 11.5132 -3.4820 6.7325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256678006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:26 Heat of formation + Delta-G solvation = -15.702218 kcal Electronic energy + Delta-G solvation = -28177.780698 eV Core-core repulsion = 24198.872205 eV Total energy + Delta-G solvation = -3978.908493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.10738 -39.88822 -37.84057 -36.81723 -35.05775 -34.57874 -33.52255 -31.98201 -30.44992 -28.61053 -27.21241 -27.13023 -27.02246 -24.25776 -23.72109 -22.08206 -21.07673 -20.69746 -20.25016 -19.24638 -17.58993 -16.88490 -16.66286 -16.09495 -15.85652 -15.32726 -15.06524 -14.69901 -14.60450 -14.10243 -13.91119 -13.85313 -13.33094 -13.06858 -12.91635 -12.72907 -12.37392 -12.21290 -11.94509 -11.88324 -11.54210 -11.51393 -11.41213 -11.27650 -11.20670 -11.03549 -10.90491 -10.81932 -10.75813 -10.57347 -10.21661 -10.18499 -10.14338 -9.78120 -9.60222 -9.24241 -8.88914 -8.25410 -7.89456 -6.22715 -4.46317 2.07279 2.78609 3.18317 3.26571 3.27842 3.34060 3.54594 3.88244 3.91189 4.24614 4.58453 4.74763 4.85309 4.92212 4.97236 5.07031 5.09580 5.24035 5.24949 5.37721 5.56736 5.67152 5.68491 5.68854 5.79589 5.81819 5.92573 5.95374 5.99893 6.07161 6.08218 6.19891 6.23219 6.26245 6.31460 6.49696 6.54256 6.63046 6.74070 6.88971 7.22518 7.57717 7.61752 7.72700 8.51684 8.69718 9.24253 9.44078 9.53425 10.72155 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.003857 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.259265 B = 7258.539597 C = 8631.298311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 H 0.110 0.890 4 C -0.145 4.145 5 C -0.063 4.063 6 H 0.127 0.873 7 C 0.139 3.861 8 N -0.296 5.296 9 N -0.231 5.231 10 C 0.187 3.813 11 C 0.375 3.625 12 H 0.076 0.924 13 C -0.538 4.538 14 H 0.078 0.922 15 C 0.074 3.926 16 N -0.815 5.815 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.275 1.275 21 N -0.671 5.671 22 C 0.651 3.349 23 O -0.584 6.584 24 O -0.373 6.373 25 C 0.136 3.864 26 C -0.181 4.181 27 C -0.182 4.182 28 C -0.139 4.139 29 O -0.236 6.236 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.272 0.728 36 H 0.404 0.596 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -7.533 -1.366 8.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 H 0.129 0.871 4 C -0.182 4.182 5 C -0.083 4.083 6 H 0.145 0.855 7 C -0.072 4.072 8 N -0.145 5.145 9 N -0.076 5.076 10 C -0.023 4.023 11 C 0.272 3.728 12 H 0.094 0.906 13 C -0.576 4.576 14 H 0.096 0.904 15 C -0.138 4.138 16 N -0.446 5.446 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.201 1.201 21 N -0.329 5.329 22 C 0.403 3.597 23 O -0.475 6.475 24 O -0.288 6.288 25 C 0.099 3.901 26 C -0.238 4.238 27 C -0.239 4.239 28 C -0.196 4.196 29 O -0.116 6.116 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.239 0.761 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.394 -7.115 -1.900 7.743 hybrid contribution -0.418 0.807 0.799 1.210 sum -2.811 -6.307 -1.101 6.993 Atomic orbital electron populations 1.21397 0.92174 1.02112 1.02221 1.22549 0.95266 0.95124 1.02485 0.87139 1.23233 1.03299 1.00613 0.91065 1.19961 0.90981 1.03621 0.93717 0.85533 1.26379 0.98413 1.03484 0.78881 1.74358 0.97734 1.14723 1.27692 1.74848 1.20942 1.15816 0.96007 1.29174 0.79108 0.93905 1.00068 1.16539 0.78241 0.95549 0.82426 0.90635 1.21179 1.38443 0.91420 1.06601 0.90418 1.25193 0.94591 0.99667 0.94377 1.69981 1.30287 1.35329 1.08983 0.86516 0.78520 0.83579 0.78741 1.19691 1.20918 1.20052 1.45371 1.17674 1.59940 1.09938 1.17943 0.79577 0.77313 0.84831 1.90782 1.68541 1.63457 1.24755 1.86304 1.30399 1.73219 1.38882 1.21838 0.91745 0.93246 0.83270 1.22503 1.02978 0.97654 1.00678 1.22493 1.05052 0.98362 0.97963 1.21827 0.94156 1.01507 1.02104 1.84683 1.32936 1.66032 1.27989 0.91902 0.91772 0.92284 0.87151 0.87774 0.91808 0.76073 0.89080 0.92667 0.91938 0.92091 0.92416 0.88860 0.91853 0.91682 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.19 37.16 0.38 -0.75 16 2 C -0.13 -1.68 6.11 -90.62 -0.55 -2.23 16 3 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 4 C -0.14 -1.73 9.79 -26.73 -0.26 -1.99 16 5 C -0.06 -0.91 6.05 -91.77 -0.56 -1.46 16 6 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 7 C 0.14 2.80 8.00 -12.94 -0.10 2.70 16 8 N -0.30 -6.75 11.83 32.55 0.39 -6.37 16 9 N -0.23 -5.81 9.54 32.55 0.31 -5.50 16 10 C 0.19 4.58 6.89 -12.94 -0.09 4.49 16 11 C 0.37 9.25 2.70 -70.23 -0.19 9.06 16 12 H 0.08 1.84 7.58 -51.93 -0.39 1.44 16 13 C -0.54 -14.21 8.86 -34.44 -0.31 -14.52 16 14 H 0.08 2.05 7.81 -52.49 -0.41 1.64 16 15 C 0.07 1.93 5.23 -17.82 -0.09 1.84 16 16 N -0.81 -21.67 9.93 55.43 0.55 -21.12 16 17 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 N -0.67 -15.83 4.47 -61.01 -0.27 -16.10 16 22 C 0.65 14.67 8.01 54.05 0.43 15.11 16 23 O -0.58 -13.76 11.54 -19.28 -0.22 -13.98 16 24 O -0.37 -7.45 9.94 -40.31 -0.40 -7.85 16 25 C 0.14 2.19 1.13 -90.62 -0.10 2.09 16 26 C -0.18 -2.70 8.37 37.16 0.31 -2.39 16 27 C -0.18 -2.91 8.37 37.16 0.31 -2.60 16 28 C -0.14 -1.72 8.85 37.16 0.33 -1.40 16 29 O -0.24 -5.30 10.87 5.38 0.06 -5.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 33 H 0.11 1.49 7.91 -51.93 -0.41 1.08 16 34 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.40 9.68 8.15 -40.82 -0.33 9.34 16 37 H 0.09 1.60 5.88 -51.93 -0.31 1.30 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.78 5.88 -51.93 -0.31 1.48 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -29.80 374.58 -6.23 -36.03 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.77 Total: 10.81 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -0.49 Total: 7.95 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.97 Total: -49.09 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.56 Total: -27.08 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.80 -6.23 -36.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256678006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.327 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds