Wall clock time and date at job start Tue Mar 31 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 115.56199 * 2 1 4 4 C 1.53071 * 117.49842 * 145.71718 * 2 1 3 5 5 C 1.52990 * 59.98677 * 107.48324 * 4 2 1 6 6 H 1.08998 * 117.50417 * 252.49944 * 5 4 2 7 7 C 1.50710 * 117.49967 * 107.50075 * 5 4 2 8 8 N 1.30274 * 126.27763 * 351.21358 * 7 5 4 9 9 N 1.28674 * 109.37802 * 180.02562 * 8 7 5 10 10 C 1.30274 * 109.37972 * 359.97438 * 9 8 7 11 11 C 1.50702 * 126.28314 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47085 * 195.04243 * 11 10 9 13 13 C 1.50700 * 109.47352 * 75.03750 * 11 10 9 14 14 H 1.07997 * 119.99771 * 119.99646 * 13 11 10 15 15 C 1.37879 * 119.99985 * 300.00517 * 13 11 10 16 16 N 1.31512 * 119.99967 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99869 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46960 * 90.00014 * 17 15 13 19 19 H 1.48494 * 109.47110 * 209.99733 * 17 15 13 20 20 H 1.48495 * 109.47181 * 330.00223 * 17 15 13 21 21 N 1.46503 * 109.46676 * 315.03918 * 11 10 9 22 22 C 1.34783 * 119.99656 * 204.99904 * 21 11 10 23 23 O 1.21507 * 119.99942 * 0.02562 * 22 21 11 24 24 O 1.34640 * 119.99655 * 180.02562 * 22 21 11 25 25 C 1.45196 * 116.99556 * 179.97438 * 24 22 21 26 26 C 1.52997 * 109.47307 * 60.00502 * 25 24 22 27 27 C 1.53001 * 109.46966 * 179.97438 * 25 24 22 28 28 C 1.52996 * 109.47628 * 299.99821 * 25 24 22 29 29 O 1.34356 * 126.28319 * 171.25480 * 7 5 4 30 30 H 1.08997 * 109.46566 * 205.68793 * 1 2 3 31 31 H 1.08996 * 109.46888 * 325.68242 * 1 2 3 32 32 H 1.08994 * 109.47279 * 85.68768 * 1 2 3 33 33 H 1.08996 * 117.49174 * 359.97438 * 4 2 1 34 34 H 1.09001 * 117.50964 * 214.96564 * 4 2 1 35 35 H 0.97003 * 119.99938 * 180.02562 * 16 15 13 36 36 H 0.97000 * 120.00182 * 24.99961 * 21 11 10 37 37 H 1.09000 * 109.47666 * 59.99529 * 26 25 24 38 38 H 1.09001 * 109.47389 * 180.02562 * 26 25 24 39 39 H 1.09006 * 109.46763 * 299.99335 * 26 25 24 40 40 H 1.09010 * 109.47077 * 60.00143 * 27 25 24 41 41 H 1.08997 * 109.47433 * 179.97438 * 27 25 24 42 42 H 1.09001 * 109.47583 * 300.00457 * 27 25 24 43 43 H 1.09003 * 109.46788 * 59.99831 * 28 25 24 44 44 H 1.08993 * 109.47551 * 180.02562 * 28 25 24 45 45 H 1.09003 * 109.46943 * 300.00629 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2368 -1.1219 0.7648 5 6 2.2365 -1.1209 -0.7651 6 1 1.6113 -1.8581 -1.2688 7 6 3.5293 -0.7809 -1.4610 8 7 4.6135 -0.3307 -0.8963 9 7 5.5188 -0.1508 -1.7928 10 6 5.0431 -0.4807 -2.9598 11 6 5.7793 -0.4178 -4.2733 12 1 5.0658 -0.4947 -5.0938 13 6 6.7619 -1.5576 -4.3534 14 1 6.6803 -2.2861 -5.1465 15 6 7.7651 -1.6703 -3.4143 16 7 7.8647 -0.7829 -2.4488 17 14 8.9827 -3.0835 -3.5133 18 1 10.1454 -2.6779 -4.3432 19 1 9.4477 -3.4329 -2.1470 20 1 8.3230 -4.2631 -4.1285 21 7 6.4987 0.8548 -4.3693 22 6 6.7994 1.3693 -5.5782 23 8 6.4735 0.7778 -6.5883 24 8 7.4610 2.5386 -5.6664 25 6 7.7517 3.0324 -7.0006 26 6 6.4422 3.2424 -7.7633 27 6 8.5016 4.3622 -6.9000 28 6 8.6172 2.0133 -7.7443 29 8 3.7749 -0.8857 -2.7778 30 1 -0.3632 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5794 32 1 -0.3633 0.0773 -1.0247 33 1 1.6115 -1.8593 1.2680 34 1 3.1720 -0.8766 1.2681 35 1 8.5707 -0.8621 -1.7883 36 1 6.7585 1.3271 -3.5629 37 1 5.8255 3.9685 -7.2335 38 1 6.6604 3.6127 -8.7650 39 1 5.9075 2.2952 -7.8350 40 1 9.4347 4.2130 -6.3565 41 1 8.7203 4.7327 -7.9015 42 1 7.8847 5.0881 -6.3703 43 1 8.0826 1.0660 -7.8159 44 1 8.8358 2.3841 -8.7456 45 1 9.5502 1.8636 -7.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256678007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:29 Heat of formation + Delta-G solvation = -15.719732 kcal Electronic energy + Delta-G solvation = -28185.856970 eV Core-core repulsion = 24206.947718 eV Total energy + Delta-G solvation = -3978.909252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.10859 -39.89019 -37.84699 -36.81904 -35.05891 -34.58044 -33.52438 -31.98177 -30.45505 -28.62411 -27.21553 -27.13090 -27.02509 -24.25831 -23.72124 -22.08254 -21.08304 -20.70625 -20.25605 -19.24661 -17.59372 -16.90254 -16.63381 -16.12020 -15.86330 -15.33075 -15.07338 -14.70210 -14.53721 -14.15761 -13.91247 -13.86187 -13.36355 -13.06880 -12.84462 -12.79804 -12.37825 -12.21525 -11.95212 -11.88634 -11.54321 -11.53024 -11.41451 -11.28849 -11.20785 -11.05072 -10.90100 -10.82109 -10.71054 -10.58461 -10.28247 -10.17737 -10.10244 -9.77641 -9.61595 -9.24146 -8.89042 -8.26106 -7.89135 -6.22835 -4.46288 2.07290 2.77679 3.17876 3.27500 3.29876 3.35150 3.52037 3.87262 3.91023 4.24817 4.57589 4.74201 4.84279 4.91985 4.97633 5.06838 5.09417 5.21440 5.24423 5.37548 5.56183 5.64481 5.68365 5.68755 5.79406 5.82117 5.91718 5.92342 5.99766 6.06970 6.08035 6.19652 6.23095 6.24211 6.31011 6.49552 6.54138 6.62869 6.73845 6.88857 7.22316 7.57585 7.61961 7.72694 8.51861 8.69767 9.24383 9.43887 9.53263 10.72111 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.004107 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.127215 B = 6816.653067 C = 8590.141008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 H 0.110 0.890 4 C -0.146 4.146 5 C -0.062 4.062 6 H 0.127 0.873 7 C 0.139 3.861 8 N -0.296 5.296 9 N -0.232 5.232 10 C 0.188 3.812 11 C 0.375 3.625 12 H 0.076 0.924 13 C -0.538 4.538 14 H 0.078 0.922 15 C 0.074 3.926 16 N -0.815 5.815 17 Si 0.900 3.100 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.271 1.271 21 N -0.671 5.671 22 C 0.651 3.349 23 O -0.584 6.584 24 O -0.372 6.372 25 C 0.137 3.863 26 C -0.181 4.181 27 C -0.139 4.139 28 C -0.182 4.182 29 O -0.236 6.236 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.404 0.596 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.611 5.625 -0.524 9.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 H 0.128 0.872 4 C -0.183 4.183 5 C -0.082 4.082 6 H 0.145 0.855 7 C -0.072 4.072 8 N -0.145 5.145 9 N -0.076 5.076 10 C -0.022 4.022 11 C 0.272 3.728 12 H 0.094 0.906 13 C -0.576 4.576 14 H 0.096 0.904 15 C -0.138 4.138 16 N -0.446 5.446 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.196 1.196 21 N -0.329 5.329 22 C 0.403 3.597 23 O -0.475 6.475 24 O -0.288 6.288 25 C 0.099 3.901 26 C -0.238 4.238 27 C -0.196 4.196 28 C -0.239 4.239 29 O -0.116 6.116 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.239 0.761 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.820 5.862 0.034 8.993 hybrid contribution 0.263 -1.151 -0.511 1.286 sum -6.556 4.712 -0.477 8.088 Atomic orbital electron populations 1.21398 0.92188 1.02161 1.02176 1.22552 0.95216 0.95017 1.02600 0.87176 1.23249 1.03281 1.00552 0.91206 1.19958 0.90956 1.03533 0.93781 0.85523 1.26374 0.98356 1.03223 0.79203 1.74362 0.97362 1.15128 1.27649 1.74851 1.18896 1.18181 0.95686 1.29181 0.77365 0.94800 1.00900 1.16549 0.90079 0.82681 0.83480 0.90628 1.21218 1.11624 1.11156 1.13610 0.90365 1.25198 0.97618 0.96615 0.94414 1.69989 1.29934 1.32932 1.11732 0.86451 0.81239 0.82136 0.77520 1.20137 1.20937 1.19581 1.45370 1.58469 1.23771 1.05304 1.17945 0.77708 0.79120 0.84895 1.90780 1.59330 1.62476 1.34947 1.86306 1.71615 1.37766 1.33112 1.21835 0.95144 0.93520 0.79592 1.22505 0.97408 1.04341 0.99580 1.21828 1.00559 0.94880 1.02333 1.22492 1.00201 1.01727 0.99453 1.84681 1.31800 1.67285 1.27857 0.92255 0.91777 0.91935 0.87781 0.87141 0.91863 0.76080 0.92658 0.91931 0.89084 0.91688 0.90806 0.91845 0.88852 0.92086 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.19 37.16 0.38 -0.69 16 2 C -0.13 -1.59 6.11 -90.58 -0.55 -2.15 16 3 H 0.11 1.44 8.14 -51.92 -0.42 1.02 16 4 C -0.15 -1.76 9.79 -26.70 -0.26 -2.02 16 5 C -0.06 -0.90 6.05 -91.77 -0.56 -1.46 16 6 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 7 C 0.14 2.80 8.00 -12.94 -0.10 2.69 16 8 N -0.30 -6.75 11.83 32.55 0.39 -6.37 16 9 N -0.23 -5.82 9.54 32.55 0.31 -5.51 16 10 C 0.19 4.58 6.89 -12.94 -0.09 4.49 16 11 C 0.37 9.24 2.70 -70.23 -0.19 9.05 16 12 H 0.08 1.84 7.58 -51.93 -0.39 1.44 16 13 C -0.54 -14.21 8.86 -34.44 -0.31 -14.51 16 14 H 0.08 2.07 7.81 -52.49 -0.41 1.66 16 15 C 0.07 1.93 5.23 -17.82 -0.09 1.84 16 16 N -0.81 -21.70 9.93 55.43 0.55 -21.15 16 17 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 N -0.67 -15.81 4.48 -61.01 -0.27 -16.08 16 22 C 0.65 14.66 8.01 54.06 0.43 15.09 16 23 O -0.58 -13.75 11.54 -19.28 -0.22 -13.97 16 24 O -0.37 -7.44 9.94 -40.33 -0.40 -7.84 16 25 C 0.14 2.19 1.13 -90.62 -0.10 2.09 16 26 C -0.18 -2.70 8.37 37.16 0.31 -2.39 16 27 C -0.14 -1.72 8.85 37.16 0.33 -1.40 16 28 C -0.18 -2.91 8.37 37.16 0.31 -2.60 16 29 O -0.24 -5.30 10.87 5.40 0.06 -5.24 16 30 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.11 1.52 7.92 -51.93 -0.41 1.11 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.40 9.67 8.15 -40.82 -0.33 9.33 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.60 5.88 -51.93 -0.31 1.30 16 40 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.78 5.88 -51.93 -0.31 1.47 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -29.84 374.58 -6.23 -36.07 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.77 Total: 10.63 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -0.49 Total: 8.05 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.97 Total: -49.10 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.56 Total: -27.05 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.84 -6.23 -36.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256678007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.349 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds