Wall clock time and date at job start Tue Mar 31 2020 14:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 115.56199 * 2 1 4 4 C 1.53071 * 117.49842 * 145.71718 * 2 1 3 5 5 C 1.52990 * 59.98677 * 107.48324 * 4 2 1 6 6 H 1.08998 * 117.50417 * 252.49944 * 5 4 2 7 7 C 1.50710 * 117.49967 * 107.50075 * 5 4 2 8 8 N 1.30274 * 126.27763 * 351.21358 * 7 5 4 9 9 N 1.28674 * 109.37802 * 180.02562 * 8 7 5 10 10 C 1.30274 * 109.37972 * 359.97438 * 9 8 7 11 11 C 1.50702 * 126.28314 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47085 * 195.04243 * 11 10 9 13 13 C 1.50700 * 109.47352 * 75.03750 * 11 10 9 14 14 H 1.07997 * 119.99771 * 119.99646 * 13 11 10 15 15 C 1.37879 * 119.99985 * 300.00517 * 13 11 10 16 16 N 1.31512 * 119.99967 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99869 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46960 * 90.00014 * 17 15 13 19 19 H 1.48494 * 109.47110 * 209.99733 * 17 15 13 20 20 H 1.48495 * 109.47181 * 330.00223 * 17 15 13 21 21 N 1.46503 * 109.46676 * 315.03918 * 11 10 9 22 22 C 1.34783 * 119.99656 * 204.99904 * 21 11 10 23 23 O 1.21507 * 119.99942 * 0.02562 * 22 21 11 24 24 O 1.34640 * 119.99655 * 180.02562 * 22 21 11 25 25 C 1.45196 * 116.99556 * 179.97438 * 24 22 21 26 26 C 1.52997 * 109.47307 * 60.00502 * 25 24 22 27 27 C 1.53001 * 109.46966 * 179.97438 * 25 24 22 28 28 C 1.52996 * 109.47628 * 299.99821 * 25 24 22 29 29 O 1.34356 * 126.28319 * 171.25480 * 7 5 4 30 30 H 1.08997 * 109.46566 * 205.68793 * 1 2 3 31 31 H 1.08996 * 109.46888 * 325.68242 * 1 2 3 32 32 H 1.08994 * 109.47279 * 85.68768 * 1 2 3 33 33 H 1.08996 * 117.49174 * 359.97438 * 4 2 1 34 34 H 1.09001 * 117.50964 * 214.96564 * 4 2 1 35 35 H 0.97003 * 119.99938 * 180.02562 * 16 15 13 36 36 H 0.97000 * 120.00182 * 24.99961 * 21 11 10 37 37 H 1.09000 * 109.47666 * 59.99529 * 26 25 24 38 38 H 1.09001 * 109.47389 * 180.02562 * 26 25 24 39 39 H 1.09006 * 109.46763 * 299.99335 * 26 25 24 40 40 H 1.09010 * 109.47077 * 60.00143 * 27 25 24 41 41 H 1.08997 * 109.47433 * 179.97438 * 27 25 24 42 42 H 1.09001 * 109.47583 * 300.00457 * 27 25 24 43 43 H 1.09003 * 109.46788 * 59.99831 * 28 25 24 44 44 H 1.08993 * 109.47551 * 180.02562 * 28 25 24 45 45 H 1.09003 * 109.46943 * 300.00629 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2368 -1.1219 0.7648 5 6 2.2365 -1.1209 -0.7651 6 1 1.6113 -1.8581 -1.2688 7 6 3.5293 -0.7809 -1.4610 8 7 4.6135 -0.3307 -0.8963 9 7 5.5188 -0.1508 -1.7928 10 6 5.0431 -0.4807 -2.9598 11 6 5.7793 -0.4178 -4.2733 12 1 5.0658 -0.4947 -5.0938 13 6 6.7619 -1.5576 -4.3534 14 1 6.6803 -2.2861 -5.1465 15 6 7.7651 -1.6703 -3.4143 16 7 7.8647 -0.7829 -2.4488 17 14 8.9827 -3.0835 -3.5133 18 1 10.1454 -2.6779 -4.3432 19 1 9.4477 -3.4329 -2.1470 20 1 8.3230 -4.2631 -4.1285 21 7 6.4987 0.8548 -4.3693 22 6 6.7994 1.3693 -5.5782 23 8 6.4735 0.7778 -6.5883 24 8 7.4610 2.5386 -5.6664 25 6 7.7517 3.0324 -7.0006 26 6 6.4422 3.2424 -7.7633 27 6 8.5016 4.3622 -6.9000 28 6 8.6172 2.0133 -7.7443 29 8 3.7749 -0.8857 -2.7778 30 1 -0.3632 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5794 32 1 -0.3633 0.0773 -1.0247 33 1 1.6115 -1.8593 1.2680 34 1 3.1720 -0.8766 1.2681 35 1 8.5707 -0.8621 -1.7883 36 1 6.7585 1.3271 -3.5629 37 1 5.8255 3.9685 -7.2335 38 1 6.6604 3.6127 -8.7650 39 1 5.9075 2.2952 -7.8350 40 1 9.4347 4.2130 -6.3565 41 1 8.7203 4.7327 -7.9015 42 1 7.8847 5.0881 -6.3703 43 1 8.0826 1.0660 -7.8159 44 1 8.8358 2.3841 -8.7456 45 1 9.5502 1.8636 -7.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256678007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:28 Heat of formation + Delta-G solvation = -37.314312 kcal Electronic energy + Delta-G solvation = -28186.793381 eV Core-core repulsion = 24206.947718 eV Total energy + Delta-G solvation = -3979.845664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.88231 -41.52533 -38.93400 -38.43461 -36.85629 -36.40540 -34.99224 -33.88508 -32.05293 -29.91387 -28.77536 -28.27344 -28.21406 -25.97208 -25.37835 -23.74304 -22.53522 -22.15829 -21.46347 -20.85938 -19.27045 -18.79622 -18.09772 -17.92079 -17.42329 -17.00216 -16.69750 -16.42283 -16.13480 -15.52596 -15.25220 -15.18664 -14.71102 -14.42996 -14.23397 -14.10945 -13.69467 -13.24689 -13.17596 -13.11899 -12.93136 -12.91376 -12.87259 -12.77532 -12.76077 -12.54121 -12.41973 -12.34462 -12.21655 -12.14752 -12.02150 -11.68210 -11.42446 -11.24321 -11.16478 -10.94315 -10.77862 -9.98875 -9.75946 -8.21178 -6.51669 0.39175 1.13635 1.34717 1.37296 1.46228 1.69695 1.83147 2.12712 2.32743 2.76882 2.95112 3.17361 3.58343 3.69234 3.80802 3.87191 3.89931 3.91134 3.95107 4.04666 4.37020 4.39728 4.59233 4.66923 4.68479 4.78114 4.80134 4.82379 4.85668 4.90045 4.95044 4.96187 5.01492 5.02201 5.14703 5.15885 5.20461 5.38622 5.42412 5.43122 5.55094 5.60218 5.72357 5.81272 6.49629 6.81749 7.22002 7.65360 7.73903 8.71358 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.004107 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.127215 B = 6816.653067 C = 8590.141008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.131 4.131 5 C -0.092 4.092 6 H 0.152 0.848 7 C 0.160 3.840 8 N -0.328 5.328 9 N -0.251 5.251 10 C 0.171 3.829 11 C 0.379 3.621 12 H 0.068 0.932 13 C -0.560 4.560 14 H 0.068 0.932 15 C 0.038 3.962 16 N -0.830 5.830 17 Si 0.954 3.046 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.269 1.269 21 N -0.674 5.674 22 C 0.651 3.349 23 O -0.598 6.598 24 O -0.379 6.379 25 C 0.118 3.882 26 C -0.176 4.176 27 C -0.132 4.132 28 C -0.178 4.178 29 O -0.243 6.243 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.142 0.858 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.400 0.600 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.661 6.175 -0.397 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 H 0.111 0.889 4 C -0.168 4.168 5 C -0.112 4.112 6 H 0.170 0.830 7 C -0.050 4.050 8 N -0.175 5.175 9 N -0.095 5.095 10 C -0.040 4.040 11 C 0.276 3.724 12 H 0.086 0.914 13 C -0.599 4.599 14 H 0.086 0.914 15 C -0.172 4.172 16 N -0.461 5.461 17 Si 0.779 3.221 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.194 1.194 21 N -0.331 5.331 22 C 0.404 3.596 23 O -0.490 6.490 24 O -0.294 6.294 25 C 0.082 3.918 26 C -0.233 4.233 27 C -0.189 4.189 28 C -0.235 4.235 29 O -0.124 6.124 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.160 0.840 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.863 6.437 0.164 10.163 hybrid contribution 0.487 -1.243 -0.557 1.446 sum -7.376 5.195 -0.393 9.030 Atomic orbital electron populations 1.21435 0.89195 1.03911 1.02883 1.22651 0.97215 0.93556 1.00271 0.88922 1.23383 1.03012 1.01341 0.89112 1.20497 0.89250 1.06292 0.95126 0.83019 1.27601 0.99428 0.99723 0.78286 1.74295 0.98165 1.17569 1.27514 1.74760 1.20032 1.18533 0.96171 1.28959 0.78225 0.96200 1.00642 1.16346 0.89705 0.82821 0.83538 0.91358 1.21332 1.12911 1.11792 1.13865 0.91409 1.25763 0.98761 0.98561 0.94090 1.70106 1.30156 1.33921 1.11950 0.85613 0.79312 0.79760 0.77409 1.19894 1.20665 1.19359 1.45185 1.58794 1.23543 1.05596 1.17974 0.77623 0.79738 0.84268 1.90777 1.59823 1.63173 1.35222 1.86315 1.70821 1.36277 1.36008 1.22437 0.96273 0.95092 0.77986 1.22444 0.96515 1.02889 1.01437 1.21861 0.99860 0.92550 1.04586 1.22445 0.99278 1.00263 1.01507 1.84684 1.31145 1.67387 1.29166 0.90228 0.90404 0.91681 0.84016 0.89195 0.92211 0.76497 0.92084 0.88536 0.92295 0.91873 0.87344 0.91241 0.92412 0.88468 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 10.19 71.98 0.73 -0.91 16 2 C -0.12 -2.54 6.11 -10.77 -0.07 -2.60 16 3 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 4 C -0.13 -2.87 9.79 30.61 0.30 -2.57 16 5 C -0.09 -2.51 6.05 -11.54 -0.07 -2.58 16 6 H 0.15 3.37 8.14 -2.39 -0.02 3.35 16 7 C 0.16 6.50 8.00 88.34 0.71 7.21 16 8 N -0.33 -15.33 11.83 -165.50 -1.96 -17.29 16 9 N -0.25 -13.04 9.54 -165.50 -1.58 -14.62 16 10 C 0.17 8.69 6.89 88.34 0.61 9.30 16 11 C 0.38 19.57 2.70 43.50 0.12 19.69 16 12 H 0.07 3.51 7.58 -2.39 -0.02 3.50 16 13 C -0.56 -30.74 8.86 25.60 0.23 -30.52 16 14 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 15 C 0.04 2.06 5.23 84.66 0.44 2.50 16 16 N -0.83 -45.46 9.93 21.45 0.21 -45.25 16 17 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 N -0.67 -33.15 4.48 -577.33 -2.58 -35.74 16 22 C 0.65 30.38 8.01 129.79 1.04 31.42 16 23 O -0.60 -29.28 11.54 19.82 0.23 -29.05 16 24 O -0.38 -15.35 9.94 -55.50 -0.55 -15.90 16 25 C 0.12 3.68 1.13 -10.80 -0.01 3.67 16 26 C -0.18 -5.03 8.37 71.98 0.60 -4.42 16 27 C -0.13 -2.93 8.85 71.98 0.64 -2.29 16 28 C -0.18 -5.57 8.37 71.98 0.60 -4.96 16 29 O -0.24 -11.18 10.87 -3.59 -0.04 -11.22 16 30 H 0.08 0.83 7.90 -2.39 -0.02 0.81 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.14 2.04 8.05 -2.39 -0.02 2.02 16 34 H 0.09 2.39 7.92 -2.39 -0.02 2.37 16 35 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.40 20.09 8.15 -92.71 -0.76 19.33 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 2.09 5.88 -2.38 -0.01 2.07 16 40 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 2.24 5.88 -2.39 -0.01 2.23 16 44 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.18 374.58 1.88 -66.30 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.26 Total: 34.41 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 5.87 Total: 22.93 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -5.91 Total: -112.89 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -0.36 Total: -56.17 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.18 1.88 -66.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256678007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.988 kcal (2) G-P(sol) polarization free energy of solvation -68.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds