Wall clock time and date at job start Tue Mar 31 2020 14:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 115.56309 * 2 1 4 4 C 1.53068 * 117.51127 * 214.29435 * 2 1 3 5 5 C 1.53000 * 117.49530 * 145.68614 * 2 1 3 6 6 H 1.09000 * 117.49745 * 214.99876 * 5 2 1 7 7 C 1.50693 * 117.50039 * 0.02562 * 5 2 1 8 8 N 1.30278 * 126.28044 * 59.89024 * 7 5 2 9 9 N 1.28674 * 109.37857 * 180.02562 * 8 7 5 10 10 C 1.30278 * 109.37917 * 0.02562 * 9 8 7 11 11 C 1.50702 * 126.27685 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46445 * 195.02038 * 11 10 9 13 13 C 1.50690 * 109.47591 * 75.01895 * 11 10 9 14 14 H 1.08009 * 120.00219 * 114.47869 * 13 11 10 15 15 C 1.37872 * 120.00085 * 294.48058 * 13 11 10 16 16 N 1.31517 * 120.00021 * 4.82036 * 15 13 11 17 17 Si 1.86804 * 120.00178 * 184.81949 * 15 13 11 18 18 H 1.48506 * 109.47134 * 84.99972 * 17 15 13 19 19 H 1.48498 * 109.47146 * 204.99642 * 17 15 13 20 20 H 1.48499 * 109.46983 * 325.00230 * 17 15 13 21 21 N 1.46497 * 109.47144 * 315.01503 * 11 10 9 22 22 C 1.34776 * 120.00116 * 209.71823 * 21 11 10 23 23 O 1.21502 * 120.00150 * 359.97438 * 22 21 11 24 24 O 1.34642 * 119.99968 * 180.02562 * 22 21 11 25 25 C 1.45200 * 117.00141 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.46930 * 59.99814 * 25 24 22 27 27 C 1.52993 * 109.47205 * 179.97438 * 25 24 22 28 28 C 1.53001 * 109.47065 * 300.00207 * 25 24 22 29 29 O 1.34355 * 107.43702 * 359.97438 * 10 9 8 30 30 H 1.08999 * 109.47381 * 274.31560 * 1 2 3 31 31 H 1.09007 * 109.46622 * 34.31570 * 1 2 3 32 32 H 1.08997 * 109.47085 * 154.31009 * 1 2 3 33 33 H 1.09002 * 117.49568 * 145.03880 * 4 2 1 34 34 H 1.08998 * 117.51773 * 359.97438 * 4 2 1 35 35 H 0.97004 * 119.99861 * 179.97438 * 16 15 13 36 36 H 0.97001 * 120.00037 * 29.70903 * 21 11 10 37 37 H 1.08999 * 109.47509 * 60.00015 * 26 25 24 38 38 H 1.08996 * 109.47237 * 180.02562 * 26 25 24 39 39 H 1.09000 * 109.46967 * 299.99988 * 26 25 24 40 40 H 1.09005 * 109.47487 * 60.00150 * 27 25 24 41 41 H 1.09002 * 109.47185 * 179.97438 * 27 25 24 42 42 H 1.08998 * 109.47492 * 300.00243 * 27 25 24 43 43 H 1.09000 * 109.47559 * 59.99567 * 28 25 24 44 44 H 1.09002 * 109.47210 * 180.02562 * 28 25 24 45 45 H 1.09009 * 109.47051 * 299.99729 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 3.1713 -0.8751 1.2686 7 6 1.3720 -2.1408 1.4604 8 7 0.4986 -2.9250 0.8952 9 7 -0.0545 -3.6644 1.7914 10 6 0.4470 -3.3766 2.9589 11 6 0.0718 -4.0137 4.2721 12 1 0.4479 -3.4027 5.0927 13 6 0.6768 -5.3914 4.3531 14 1 1.4351 -5.6056 5.0918 15 6 0.2625 -6.3785 3.4843 16 7 -0.5903 -6.0941 2.5244 17 14 0.9124 -8.1199 3.6706 18 1 0.0904 -8.8510 4.6682 19 1 0.8395 -8.8181 2.3620 20 1 2.3239 -8.0749 4.1298 21 7 -1.3866 -4.1145 4.3669 22 6 -1.9884 -4.0682 5.5720 23 8 -1.3213 -3.9433 6.5798 24 8 -3.3288 -4.1613 5.6591 25 6 -3.9084 -4.1045 6.9892 26 6 -3.5452 -2.7719 7.6473 27 6 -5.4302 -4.2247 6.8879 28 6 -3.3604 -5.2565 7.8340 29 8 1.3599 -2.4077 2.7772 30 1 -0.3634 0.0773 1.0247 31 1 -0.3633 0.8489 -0.5794 32 1 -0.3633 -0.9261 -0.4455 33 1 3.1724 -0.8757 -1.2679 34 1 1.6124 -1.8597 -1.2678 35 1 -0.8816 -6.7885 1.9129 36 1 -1.9192 -4.2144 3.5624 37 1 -3.9355 -1.9512 7.0455 38 1 -3.9799 -2.7294 8.6459 39 1 -2.4610 -2.6859 7.7194 40 1 -5.6894 -5.1739 6.4189 41 1 -5.8654 -4.1825 7.8864 42 1 -5.8203 -3.4038 6.2862 43 1 -2.2762 -5.1705 7.9061 44 1 -3.7959 -5.2142 8.8323 45 1 -3.6192 -6.2060 7.3651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256678008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:32 Heat of formation + Delta-G solvation = -16.337836 kcal Electronic energy + Delta-G solvation = -28474.675594 eV Core-core repulsion = 24495.739539 eV Total energy + Delta-G solvation = -3978.936055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.11135 -39.91469 -37.86148 -36.83846 -35.04820 -34.59116 -33.53801 -31.96067 -30.17383 -28.53517 -27.41351 -27.14273 -27.03793 -24.31759 -23.71349 -22.11481 -21.25126 -20.59237 -19.98021 -19.25137 -17.57956 -16.95203 -16.42842 -16.15804 -15.90829 -15.34133 -15.17028 -14.85384 -14.44193 -14.28249 -13.94561 -13.87642 -13.11415 -13.07628 -12.82409 -12.52512 -12.26963 -12.16813 -12.09586 -11.90276 -11.55580 -11.46558 -11.42865 -11.24005 -11.21651 -11.04774 -10.91828 -10.83504 -10.69246 -10.52594 -10.28280 -10.13477 -10.06237 -9.79484 -9.64220 -9.24535 -8.88373 -8.26694 -7.92034 -6.25141 -4.46979 2.08588 2.77774 3.17711 3.26972 3.28783 3.35558 3.51919 3.84973 3.93093 4.24175 4.61071 4.73026 4.82539 4.92281 5.05627 5.05904 5.08255 5.23102 5.33353 5.36731 5.62094 5.67554 5.76565 5.78371 5.84133 5.89202 5.91449 5.98755 6.03111 6.06480 6.14697 6.18429 6.22026 6.31312 6.39822 6.52620 6.57006 6.61920 6.72365 6.88764 7.21074 7.56079 7.60775 7.71681 8.50939 8.68949 9.24027 9.42281 9.53256 10.71415 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.004449 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.024492 B = 6291.678920 C = 8058.425647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.131 4.131 3 H 0.113 0.887 4 C -0.148 4.148 5 C -0.066 4.066 6 H 0.127 0.873 7 C 0.142 3.858 8 N -0.293 5.293 9 N -0.238 5.238 10 C 0.188 3.812 11 C 0.374 3.626 12 H 0.078 0.922 13 C -0.542 4.542 14 H 0.078 0.922 15 C 0.077 3.923 16 N -0.819 5.819 17 Si 0.901 3.099 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.272 1.272 21 N -0.669 5.669 22 C 0.650 3.350 23 O -0.586 6.586 24 O -0.372 6.372 25 C 0.137 3.863 26 C -0.181 4.181 27 C -0.139 4.139 28 C -0.182 4.182 29 O -0.237 6.237 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.408 0.592 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 8.874 0.442 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.150 4.150 3 H 0.131 0.869 4 C -0.185 4.185 5 C -0.086 4.086 6 H 0.144 0.856 7 C -0.069 4.069 8 N -0.142 5.142 9 N -0.083 5.083 10 C -0.022 4.022 11 C 0.271 3.729 12 H 0.096 0.904 13 C -0.580 4.580 14 H 0.096 0.904 15 C -0.135 4.135 16 N -0.450 5.450 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.197 1.197 21 N -0.326 5.326 22 C 0.402 3.598 23 O -0.477 6.477 24 O -0.287 6.287 25 C 0.099 3.901 26 C -0.238 4.238 27 C -0.196 4.196 28 C -0.239 4.239 29 O -0.117 6.117 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.244 0.756 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.108 8.293 -0.114 8.858 hybrid contribution 0.977 -0.701 0.590 1.339 sum -2.131 7.592 0.476 7.900 Atomic orbital electron populations 1.21406 0.92196 1.02791 1.01988 1.22517 0.96246 0.93792 1.02478 0.86945 1.23263 1.02854 1.01194 0.91205 1.19988 0.98403 0.96374 0.93809 0.85552 1.26282 1.00645 1.00775 0.79178 1.74339 1.07620 1.04732 1.27467 1.74787 1.21586 1.16120 0.95768 1.29393 0.86913 0.84865 1.01068 1.16573 0.77565 0.95125 0.83621 0.90403 1.21207 1.25100 0.92435 1.19241 0.90424 1.25172 0.94755 0.99673 0.93889 1.69958 1.28266 1.33390 1.13394 0.86458 0.79588 0.83564 0.77641 1.20058 1.20944 1.19672 1.45186 1.08035 1.73485 1.05936 1.17963 0.80078 0.76816 0.84908 1.90779 1.64790 1.57197 1.34950 1.86307 1.21926 1.87037 1.33438 1.21841 0.92508 0.96053 0.79683 1.22504 1.05308 0.95941 1.00090 1.21827 0.92381 1.03062 1.02339 1.22499 1.05048 0.97433 0.98919 1.84690 1.52578 1.46513 1.27894 0.92625 0.92182 0.90929 0.87868 0.87092 0.91845 0.75605 0.92639 0.91907 0.89098 0.91677 0.90787 0.91823 0.88867 0.92053 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.13 37.16 0.34 -1.31 16 2 C -0.13 -1.54 6.41 -90.58 -0.58 -2.12 16 3 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.15 -1.77 9.79 -26.70 -0.26 -2.03 16 5 C -0.07 -0.95 6.33 -91.77 -0.58 -1.53 16 6 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 7 C 0.14 2.82 7.14 -12.94 -0.09 2.72 16 8 N -0.29 -6.53 10.98 32.55 0.36 -6.17 16 9 N -0.24 -5.91 9.84 32.55 0.32 -5.59 16 10 C 0.19 4.56 6.98 -12.94 -0.09 4.47 16 11 C 0.37 9.21 2.76 -70.24 -0.19 9.01 16 12 H 0.08 1.90 7.43 -51.93 -0.39 1.51 16 13 C -0.54 -14.25 8.87 -34.45 -0.31 -14.56 16 14 H 0.08 2.04 7.82 -52.48 -0.41 1.63 16 15 C 0.08 2.01 5.24 -17.82 -0.09 1.91 16 16 N -0.82 -21.60 9.93 55.43 0.55 -21.05 16 17 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 N -0.67 -15.73 4.38 -61.02 -0.27 -15.99 16 22 C 0.65 14.59 8.05 54.05 0.44 15.03 16 23 O -0.59 -13.72 11.46 -19.27 -0.22 -13.94 16 24 O -0.37 -7.40 9.94 -40.33 -0.40 -7.80 16 25 C 0.14 2.18 1.13 -90.62 -0.10 2.08 16 26 C -0.18 -2.69 8.37 37.16 0.31 -2.38 16 27 C -0.14 -1.72 8.85 37.15 0.33 -1.39 16 28 C -0.18 -2.89 8.37 37.16 0.31 -2.58 16 29 O -0.24 -5.28 10.87 5.40 0.06 -5.22 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.09 7.21 -51.93 -0.37 0.72 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 1.52 7.82 -51.93 -0.41 1.11 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.41 9.80 7.89 -40.82 -0.32 9.48 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.59 5.88 -51.93 -0.31 1.29 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.76 5.88 -51.93 -0.31 1.46 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -29.46 371.63 -6.32 -35.78 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.72 Total: 11.41 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.58 Total: 7.33 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.96 Total: -48.80 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.56 Total: -26.97 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.46 -6.32 -35.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256678008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.439 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds