Wall clock time and date at job start Tue Mar 31 2020 14:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 115.56309 * 2 1 4 4 C 1.53068 * 117.51127 * 214.29435 * 2 1 3 5 5 C 1.53000 * 117.49530 * 145.68614 * 2 1 3 6 6 H 1.09000 * 117.49745 * 214.99876 * 5 2 1 7 7 C 1.50693 * 117.50039 * 0.02562 * 5 2 1 8 8 N 1.30278 * 126.28044 * 59.89024 * 7 5 2 9 9 N 1.28674 * 109.37857 * 180.02562 * 8 7 5 10 10 C 1.30278 * 109.37917 * 0.02562 * 9 8 7 11 11 C 1.50702 * 126.27685 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46445 * 195.02038 * 11 10 9 13 13 C 1.50690 * 109.47591 * 75.01895 * 11 10 9 14 14 H 1.08009 * 120.00219 * 114.47869 * 13 11 10 15 15 C 1.37872 * 120.00085 * 294.48058 * 13 11 10 16 16 N 1.31517 * 120.00021 * 4.82036 * 15 13 11 17 17 Si 1.86804 * 120.00178 * 184.81949 * 15 13 11 18 18 H 1.48506 * 109.47134 * 84.99972 * 17 15 13 19 19 H 1.48498 * 109.47146 * 204.99642 * 17 15 13 20 20 H 1.48499 * 109.46983 * 325.00230 * 17 15 13 21 21 N 1.46497 * 109.47144 * 315.01503 * 11 10 9 22 22 C 1.34776 * 120.00116 * 209.71823 * 21 11 10 23 23 O 1.21502 * 120.00150 * 359.97438 * 22 21 11 24 24 O 1.34642 * 119.99968 * 180.02562 * 22 21 11 25 25 C 1.45200 * 117.00141 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.46930 * 59.99814 * 25 24 22 27 27 C 1.52993 * 109.47205 * 179.97438 * 25 24 22 28 28 C 1.53001 * 109.47065 * 300.00207 * 25 24 22 29 29 O 1.34355 * 107.43702 * 359.97438 * 10 9 8 30 30 H 1.08999 * 109.47381 * 274.31560 * 1 2 3 31 31 H 1.09007 * 109.46622 * 34.31570 * 1 2 3 32 32 H 1.08997 * 109.47085 * 154.31009 * 1 2 3 33 33 H 1.09002 * 117.49568 * 145.03880 * 4 2 1 34 34 H 1.08998 * 117.51773 * 359.97438 * 4 2 1 35 35 H 0.97004 * 119.99861 * 179.97438 * 16 15 13 36 36 H 0.97001 * 120.00037 * 29.70903 * 21 11 10 37 37 H 1.08999 * 109.47509 * 60.00015 * 26 25 24 38 38 H 1.08996 * 109.47237 * 180.02562 * 26 25 24 39 39 H 1.09000 * 109.46967 * 299.99988 * 26 25 24 40 40 H 1.09005 * 109.47487 * 60.00150 * 27 25 24 41 41 H 1.09002 * 109.47185 * 179.97438 * 27 25 24 42 42 H 1.08998 * 109.47492 * 300.00243 * 27 25 24 43 43 H 1.09000 * 109.47559 * 59.99567 * 28 25 24 44 44 H 1.09002 * 109.47210 * 180.02562 * 28 25 24 45 45 H 1.09009 * 109.47051 * 299.99729 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 3.1713 -0.8751 1.2686 7 6 1.3720 -2.1408 1.4604 8 7 0.4986 -2.9250 0.8952 9 7 -0.0545 -3.6644 1.7914 10 6 0.4470 -3.3766 2.9589 11 6 0.0718 -4.0137 4.2721 12 1 0.4479 -3.4027 5.0927 13 6 0.6768 -5.3914 4.3531 14 1 1.4351 -5.6056 5.0918 15 6 0.2625 -6.3785 3.4843 16 7 -0.5903 -6.0941 2.5244 17 14 0.9124 -8.1199 3.6706 18 1 0.0904 -8.8510 4.6682 19 1 0.8395 -8.8181 2.3620 20 1 2.3239 -8.0749 4.1298 21 7 -1.3866 -4.1145 4.3669 22 6 -1.9884 -4.0682 5.5720 23 8 -1.3213 -3.9433 6.5798 24 8 -3.3288 -4.1613 5.6591 25 6 -3.9084 -4.1045 6.9892 26 6 -3.5452 -2.7719 7.6473 27 6 -5.4302 -4.2247 6.8879 28 6 -3.3604 -5.2565 7.8340 29 8 1.3599 -2.4077 2.7772 30 1 -0.3634 0.0773 1.0247 31 1 -0.3633 0.8489 -0.5794 32 1 -0.3633 -0.9261 -0.4455 33 1 3.1724 -0.8757 -1.2679 34 1 1.6124 -1.8597 -1.2678 35 1 -0.8816 -6.7885 1.9129 36 1 -1.9192 -4.2144 3.5624 37 1 -3.9355 -1.9512 7.0455 38 1 -3.9799 -2.7294 8.6459 39 1 -2.4610 -2.6859 7.7194 40 1 -5.6894 -5.1739 6.4189 41 1 -5.8654 -4.1825 7.8864 42 1 -5.8203 -3.4038 6.2862 43 1 -2.2762 -5.1705 7.9061 44 1 -3.7959 -5.2142 8.8323 45 1 -3.6192 -6.2060 7.3651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256678008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:31 Heat of formation + Delta-G solvation = -37.590741 kcal Electronic energy + Delta-G solvation = -28475.597190 eV Core-core repulsion = 24495.739539 eV Total energy + Delta-G solvation = -3979.857650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.86128 -41.54551 -38.96759 -38.44596 -36.82585 -36.40820 -34.99573 -33.85933 -31.87124 -29.77936 -29.12739 -28.28000 -28.22126 -26.04613 -25.35245 -23.76621 -22.59587 -22.16328 -21.22689 -20.85803 -19.24324 -18.84648 -17.99794 -17.77450 -17.44821 -16.99811 -16.63469 -16.48494 -16.09254 -15.66822 -15.48238 -15.25665 -14.72732 -14.43220 -14.16685 -14.13757 -13.48366 -13.28212 -13.25413 -13.16539 -12.96697 -12.89651 -12.87194 -12.78148 -12.76971 -12.58078 -12.43256 -12.31307 -12.23406 -12.13969 -12.00768 -11.62081 -11.42605 -11.25408 -11.11366 -10.93675 -10.77950 -9.98901 -9.77274 -8.22322 -6.51308 0.42580 1.15262 1.35424 1.37937 1.46226 1.71668 1.83730 2.11221 2.33020 2.79462 2.95526 3.20854 3.58679 3.68359 3.78898 3.86433 3.89164 3.93553 4.01417 4.03950 4.40355 4.43339 4.59440 4.67470 4.68075 4.75856 4.81222 4.81807 4.83958 4.84962 4.89564 4.94401 5.02056 5.04279 5.07510 5.15389 5.16825 5.37870 5.41433 5.43475 5.54480 5.59370 5.73140 5.79844 6.49727 6.81487 7.22583 7.64275 7.75961 8.71964 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.004449 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.024492 B = 6291.678920 C = 8058.425647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.110 4.110 3 H 0.155 0.845 4 C -0.133 4.133 5 C -0.099 4.099 6 H 0.154 0.846 7 C 0.163 3.837 8 N -0.321 5.321 9 N -0.258 5.258 10 C 0.171 3.829 11 C 0.379 3.621 12 H 0.069 0.931 13 C -0.565 4.565 14 H 0.068 0.932 15 C 0.042 3.958 16 N -0.833 5.833 17 Si 0.955 3.045 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.270 1.270 21 N -0.671 5.671 22 C 0.650 3.350 23 O -0.599 6.599 24 O -0.378 6.378 25 C 0.118 3.882 26 C -0.176 4.176 27 C -0.132 4.132 28 C -0.178 4.178 29 O -0.245 6.245 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.143 0.857 34 H 0.088 0.912 35 H 0.269 0.731 36 H 0.404 0.596 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 10.221 0.196 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 H 0.173 0.827 4 C -0.170 4.170 5 C -0.118 4.118 6 H 0.171 0.829 7 C -0.048 4.048 8 N -0.168 5.168 9 N -0.102 5.102 10 C -0.041 4.041 11 C 0.275 3.725 12 H 0.087 0.913 13 C -0.604 4.604 14 H 0.086 0.914 15 C -0.168 4.168 16 N -0.465 5.465 17 Si 0.780 3.220 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.195 1.195 21 N -0.329 5.329 22 C 0.403 3.597 23 O -0.491 6.491 24 O -0.294 6.294 25 C 0.082 3.918 26 C -0.233 4.233 27 C -0.189 4.189 28 C -0.235 4.235 29 O -0.126 6.126 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.161 0.839 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.239 0.761 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.189 9.643 -0.365 10.163 hybrid contribution 0.962 -0.983 0.662 1.526 sum -2.227 8.660 0.297 8.947 Atomic orbital electron populations 1.21428 0.93649 1.02726 1.00899 1.22725 0.95148 0.95010 1.00015 0.82730 1.23388 1.04184 1.00361 0.89074 1.20558 0.99186 0.96868 0.95234 0.82873 1.27514 0.99226 0.99843 0.78195 1.74283 1.09340 1.06005 1.27211 1.74699 1.22394 1.16839 0.96254 1.29129 0.88039 0.86140 1.00803 1.16358 0.78015 0.94453 0.83671 0.91289 1.21338 1.25574 0.93824 1.19638 0.91397 1.25738 0.95020 1.02469 0.93587 1.70072 1.28878 1.33883 1.13622 0.85619 0.79017 0.79823 0.77536 1.19887 1.20562 1.19495 1.45033 1.07644 1.73992 1.06203 1.17997 0.81010 0.76430 0.84276 1.90775 1.65536 1.57634 1.35204 1.86317 1.20104 1.86614 1.36329 1.22444 0.94612 0.96686 0.78038 1.22444 1.03354 0.95457 1.02047 1.21861 0.89164 1.03230 1.04620 1.22452 1.02909 0.97193 1.00973 1.84689 1.52269 1.46312 1.29312 0.94720 0.89172 0.93624 0.83911 0.89327 0.92135 0.76102 0.92118 0.88490 0.92312 0.91844 0.87309 0.91262 0.92395 0.88429 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.13 71.98 0.66 -2.56 16 2 C -0.11 -2.24 6.41 -10.77 -0.07 -2.30 16 3 H 0.16 1.95 8.14 -2.38 -0.02 1.93 16 4 C -0.13 -2.79 9.79 30.62 0.30 -2.49 16 5 C -0.10 -2.63 6.33 -11.54 -0.07 -2.70 16 6 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 7 C 0.16 6.52 7.14 88.34 0.63 7.15 16 8 N -0.32 -14.74 10.98 -165.50 -1.82 -16.55 16 9 N -0.26 -13.29 9.84 -165.50 -1.63 -14.92 16 10 C 0.17 8.63 6.98 88.34 0.62 9.25 16 11 C 0.38 19.59 2.76 43.50 0.12 19.71 16 12 H 0.07 3.58 7.43 -2.38 -0.02 3.56 16 13 C -0.57 -30.97 8.87 25.60 0.23 -30.75 16 14 H 0.07 3.73 7.82 -2.91 -0.02 3.71 16 15 C 0.04 2.24 5.24 84.65 0.44 2.68 16 16 N -0.83 -45.30 9.93 21.45 0.21 -45.09 16 17 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 N -0.67 -33.13 4.38 -577.37 -2.53 -35.66 16 22 C 0.65 30.34 8.05 129.79 1.05 31.39 16 23 O -0.60 -29.30 11.46 19.84 0.23 -29.07 16 24 O -0.38 -15.34 9.94 -55.51 -0.55 -15.89 16 25 C 0.12 3.68 1.13 -10.80 -0.01 3.67 16 26 C -0.18 -5.03 8.37 71.98 0.60 -4.43 16 27 C -0.13 -2.93 8.85 71.98 0.64 -2.29 16 28 C -0.18 -5.54 8.37 71.98 0.60 -4.94 16 29 O -0.25 -11.25 10.87 -3.58 -0.04 -11.29 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.04 1.37 7.21 -2.39 -0.02 1.36 16 33 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.32 7.82 -2.39 -0.02 2.30 16 35 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.40 20.42 7.89 -92.71 -0.73 19.68 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 2.08 5.88 -2.39 -0.01 2.07 16 40 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 2.23 5.88 -2.39 -0.01 2.22 16 44 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -68.24 371.63 1.91 -66.32 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.28 Total: 35.52 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 5.73 Total: 21.37 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -5.76 Total: -112.23 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -0.36 Total: -56.25 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.24 1.91 -66.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256678008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.733 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds