Wall clock time and date at job start Tue Mar 31 2020 13:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 N 1.46506 * 109.46901 * 294.99627 * 3 2 1 6 6 C 1.34776 * 119.99799 * 85.00473 * 5 3 2 7 7 O 1.21351 * 119.99732 * 359.97438 * 6 5 3 8 8 C 1.49445 * 119.99929 * 179.97438 * 6 5 3 9 9 O 1.21344 * 120.00012 * 0.02562 * 8 6 5 10 10 N 1.34776 * 119.99929 * 179.97438 * 8 6 5 11 11 C 1.46506 * 119.99799 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.46859 * 179.97438 * 11 10 8 13 13 C 1.50694 * 109.47211 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99804 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00218 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00031 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99824 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47113 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46978 * 120.00402 * 17 15 13 20 20 H 1.48500 * 109.46992 * 240.00310 * 17 15 13 21 21 C 1.50700 * 109.46738 * 175.00110 * 3 2 1 22 22 C 1.41384 * 128.00554 * 254.99406 * 21 3 2 23 23 C 1.50701 * 126.80240 * 359.97438 * 22 21 3 24 24 N 1.30175 * 106.39650 * 179.97438 * 22 21 3 25 25 O 1.20926 * 111.60521 * 0.02562 * 24 22 21 26 26 C 1.34039 * 111.56373 * 359.75785 * 25 24 22 27 27 C 1.50703 * 126.77734 * 180.29050 * 26 25 24 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 0.97001 * 119.99984 * 264.99882 * 5 3 2 34 34 H 0.97001 * 120.00217 * 359.97438 * 10 8 6 35 35 H 1.08999 * 109.46907 * 299.99415 * 11 10 8 36 36 H 1.08998 * 109.47067 * 59.99959 * 11 10 8 37 37 H 1.08999 * 109.47339 * 299.99986 * 12 11 10 38 38 H 1.09007 * 109.46939 * 59.99640 * 12 11 10 39 39 H 0.96999 * 120.00142 * 179.97438 * 16 15 13 40 40 H 1.08990 * 109.47109 * 89.99618 * 23 22 21 41 41 H 1.09000 * 109.46910 * 210.00133 * 23 22 21 42 42 H 1.09008 * 109.46818 * 329.99487 * 23 22 21 43 43 H 1.08994 * 109.47430 * 270.11436 * 27 26 25 44 44 H 1.09004 * 109.47136 * 30.11443 * 27 26 25 45 45 H 1.09003 * 109.47340 * 150.10634 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 7 1.6524 2.0974 -1.2519 6 6 0.4351 2.6644 -1.3671 7 8 -0.3400 2.6319 -0.4340 8 6 0.0400 3.3329 -2.6439 9 8 0.8150 3.3650 -3.5771 10 7 -1.1775 3.8994 -2.7592 11 6 -1.5650 4.5544 -4.0111 12 6 -2.9845 5.1096 -3.8780 13 6 -3.3830 5.7838 -5.1655 14 1 -2.6929 5.8130 -5.9958 15 6 -4.6288 6.3625 -5.2838 16 7 -5.4693 6.3266 -4.2729 17 14 -5.1229 7.1977 -6.8801 18 1 -4.0071 7.1012 -7.8552 19 1 -6.3258 6.5284 -7.4371 20 1 -5.4289 8.6268 -6.6169 21 6 3.5419 1.4442 0.1238 22 6 4.3214 1.7648 1.2589 23 6 3.8129 2.1821 2.6148 24 7 5.5655 1.6281 0.9008 25 8 5.6610 1.2814 -0.2537 26 6 4.4574 1.1343 -0.8251 27 6 4.1779 0.7096 -2.2438 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2720 2.1231 -1.9979 34 1 -1.7974 3.8729 -2.0136 35 1 -0.8739 5.3700 -4.2235 36 1 -1.5334 3.8300 -4.8250 37 1 -3.6754 4.2937 -3.6658 38 1 -3.0165 5.8338 -3.0639 39 1 -6.3456 6.7340 -4.3560 40 1 3.6668 1.2983 3.2357 41 1 4.5396 2.8425 3.0879 42 1 2.8645 2.7073 2.5012 43 1 4.1342 1.5901 -2.8847 44 1 4.9731 0.0485 -2.5885 45 1 3.2245 0.1829 -2.2843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261174410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:20 Heat of formation + Delta-G solvation = -30.074454 kcal Electronic energy + Delta-G solvation = -27306.481940 eV Core-core repulsion = 23326.950220 eV Total energy + Delta-G solvation = -3979.531720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.31764 -40.71502 -38.71635 -37.03297 -35.21470 -34.66586 -33.35536 -32.91460 -32.49959 -29.85410 -29.10529 -28.83961 -26.96404 -25.50381 -23.60768 -22.77484 -21.39611 -21.10625 -20.45094 -20.17546 -18.47342 -18.00856 -17.16505 -16.95762 -16.44593 -16.14177 -15.59621 -15.09586 -14.82900 -14.67502 -14.48650 -14.16219 -13.82778 -13.75405 -13.61712 -13.51578 -13.45309 -13.29463 -12.88581 -12.76084 -12.59212 -12.35433 -11.99754 -11.68377 -11.48767 -11.43923 -11.25792 -11.10175 -11.06017 -10.67410 -10.44115 -10.26192 -9.83890 -9.67071 -9.45903 -9.36859 -9.21459 -8.74495 -8.45022 -6.12886 -4.16539 1.03632 1.53295 1.74168 2.45880 2.71182 3.26130 3.33952 3.35523 3.38248 3.73848 3.80434 4.04959 4.23772 4.37848 4.49286 4.65585 4.73580 4.74082 4.91326 4.98119 5.07131 5.10018 5.14668 5.24248 5.27389 5.35462 5.38289 5.50504 5.60713 5.71210 5.77313 5.87877 6.06567 6.13987 6.19930 6.22736 6.54517 6.65028 6.95379 7.42487 7.54495 7.59704 7.84305 7.85609 7.90663 8.16935 8.29118 8.89337 9.48635 10.98634 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.002290 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.412548 B =12222.187494 C =12610.369090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.106 0.894 5 N -0.703 5.703 6 C 0.510 3.490 7 O -0.511 6.511 8 C 0.496 3.504 9 O -0.534 6.534 10 N -0.684 5.684 11 C 0.119 3.881 12 C 0.011 3.989 13 C -0.523 4.523 14 H 0.061 0.939 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.216 4.216 22 C 0.036 3.964 23 C -0.080 4.080 24 N -0.365 5.365 25 O 0.100 5.900 26 C -0.012 4.012 27 C -0.090 4.090 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.435 -13.961 11.002 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.121 3.879 4 H 0.124 0.876 5 N -0.359 5.359 6 C 0.291 3.709 7 O -0.385 6.385 8 C 0.276 3.724 9 O -0.412 6.412 10 N -0.335 5.335 11 C -0.003 4.003 12 C -0.027 4.027 13 C -0.562 4.562 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.221 4.221 22 C -0.124 4.124 23 C -0.137 4.137 24 N -0.071 5.071 25 O 0.036 5.964 26 C -0.076 4.076 27 C -0.147 4.147 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.247 0.753 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 19.393 -13.720 11.673 26.468 hybrid contribution -1.059 0.475 -0.972 1.514 sum 18.334 -13.245 10.701 25.021 Atomic orbital electron populations 1.21840 0.93971 1.01292 1.03439 1.21974 0.97450 0.94542 1.02764 1.19168 0.86351 0.94430 0.87974 0.87607 1.45934 1.16563 1.56635 1.16733 1.20428 0.82338 0.79125 0.88959 1.90771 1.50650 1.57230 1.39852 1.19952 0.83742 0.81021 0.87706 1.90725 1.51283 1.59227 1.39954 1.46238 1.14650 1.53715 1.18915 1.21947 0.99683 0.95880 0.82786 1.19360 0.88312 0.96552 0.98442 1.21045 1.00143 1.36209 0.98770 0.92115 1.25004 0.96435 0.96075 0.96769 1.69963 1.07709 1.44686 1.30695 0.86448 0.78567 0.79158 0.83337 1.19576 1.20910 1.20908 1.20932 0.96941 1.10257 0.93947 1.23393 0.88625 1.01630 0.98720 1.20237 1.01879 1.02297 0.89330 1.73877 1.20526 1.17958 0.94706 1.84825 1.29880 1.63366 1.18331 1.24310 0.84235 1.00944 0.98134 1.20594 1.04220 1.03359 0.86551 0.92950 0.91709 0.92292 0.91452 0.90675 0.75245 0.75349 0.91846 0.91818 0.95650 0.95671 0.92804 0.89836 0.90262 0.89729 0.88496 0.89005 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.51 37.16 0.32 -1.12 16 2 C -0.13 -1.04 5.59 -26.73 -0.15 -1.19 16 3 C 0.23 2.06 2.52 -69.08 -0.17 1.89 16 4 H 0.11 1.04 6.79 -51.93 -0.35 0.69 16 5 N -0.70 -7.47 4.85 -55.36 -0.27 -7.74 16 6 C 0.51 6.91 6.46 -11.59 -0.07 6.84 16 7 O -0.51 -7.51 13.61 5.50 0.07 -7.43 16 8 C 0.50 8.00 7.89 -11.59 -0.09 7.91 16 9 O -0.53 -9.48 16.48 5.50 0.09 -9.39 16 10 N -0.68 -11.82 5.55 -60.73 -0.34 -12.16 16 11 C 0.12 2.39 5.61 -4.04 -0.02 2.37 16 12 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 13 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.22 -1.96 5.24 -104.42 -0.55 -2.51 16 22 C 0.04 0.35 7.33 -82.10 -0.60 -0.25 16 23 C -0.08 -0.56 10.34 36.01 0.37 -0.19 16 24 N -0.36 -4.10 12.07 33.43 0.40 -3.70 16 25 O 0.10 1.02 11.20 17.18 0.19 1.21 16 26 C -0.01 -0.10 7.34 -35.30 -0.26 -0.36 16 27 C -0.09 -0.49 8.72 36.01 0.31 -0.18 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.67 7.85 -51.93 -0.41 0.27 16 30 H 0.06 0.69 5.64 -51.93 -0.29 0.40 16 31 H 0.07 0.49 6.82 -51.93 -0.35 0.13 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.41 4.02 5.57 -40.82 -0.23 3.80 16 34 H 0.41 6.73 7.94 -40.82 -0.32 6.41 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.54 7.45 -51.92 -0.39 0.15 16 43 H 0.10 0.50 7.78 -51.93 -0.40 0.09 16 44 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.48 6.42 -51.93 -0.33 0.15 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -31.50 374.70 -6.38 -37.89 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.43 Total: 4.33 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.47 Total: 0.41 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.53 Total: -48.64 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.36 Total: -15.60 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.50 -6.38 -37.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261174410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.811 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds