Wall clock time and date at job start Tue Mar 31 2020 13:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.46799 * 2 1 4 4 H 1.08997 * 109.47072 * 304.99926 * 3 2 1 5 5 N 1.46500 * 109.47035 * 65.00371 * 3 2 1 6 6 C 1.34772 * 119.99470 * 204.99726 * 5 3 2 7 7 O 1.21589 * 120.00398 * 0.02562 * 6 5 3 8 8 N 1.34778 * 120.00095 * 179.97438 * 6 5 3 9 9 C 1.46495 * 120.00378 * 180.02562 * 8 6 5 10 10 C 1.53045 * 109.45951 * 275.02385 * 9 8 6 11 11 C 1.53189 * 109.31372 * 178.60158 * 10 9 8 12 12 N 1.46921 * 108.76872 * 54.65907 * 11 10 9 13 13 C 1.36927 * 120.63380 * 126.36281 * 12 11 10 14 14 H 1.08003 * 119.99648 * 208.02296 * 13 12 11 15 15 C 1.38814 * 120.00182 * 28.02176 * 13 12 11 16 16 N 1.31613 * 119.99814 * 17.51981 * 15 13 12 17 17 Si 1.86800 * 119.99791 * 197.52645 * 15 13 12 18 18 H 1.48507 * 109.46902 * 94.06607 * 17 15 13 19 19 H 1.48497 * 109.47098 * 214.06262 * 17 15 13 20 20 H 1.48494 * 109.47340 * 334.06655 * 17 15 13 21 21 C 1.46935 * 118.73426 * 306.38239 * 12 11 10 22 22 C 1.53042 * 109.46491 * 154.97215 * 9 8 6 23 23 C 1.53004 * 109.46456 * 185.00098 * 3 2 1 24 24 F 1.39896 * 109.47402 * 60.00242 * 23 3 2 25 25 F 1.39901 * 109.46502 * 180.02562 * 23 3 2 26 26 F 1.39900 * 109.47270 * 299.99857 * 23 3 2 27 27 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46974 * 300.00492 * 1 2 3 29 29 H 1.09000 * 109.47311 * 59.99531 * 1 2 3 30 30 H 1.08998 * 109.46812 * 240.00267 * 2 1 3 31 31 H 1.08991 * 109.47128 * 119.99672 * 2 1 3 32 32 H 0.96997 * 120.00157 * 24.99134 * 5 3 2 33 33 H 0.97006 * 119.99942 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46332 * 34.99607 * 9 8 6 35 35 H 1.09007 * 109.49611 * 298.56904 * 10 9 8 36 36 H 1.09006 * 109.49267 * 58.66286 * 10 9 8 37 37 H 1.09004 * 109.59528 * 294.86535 * 11 10 9 38 38 H 1.09000 * 109.69995 * 174.51077 * 11 10 9 39 39 H 0.97001 * 119.99897 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.58728 * 293.82244 * 21 12 11 41 41 H 1.08995 * 109.70187 * 173.46748 * 21 12 11 42 42 H 1.09002 * 109.49554 * 301.34034 * 22 9 8 43 43 H 1.09003 * 109.49556 * 61.42887 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 1.5256 3.4384 1.2996 7 8 1.7324 4.1045 0.3036 8 7 1.1686 4.0410 2.4510 9 6 1.0302 5.4985 2.5028 10 6 2.3985 6.1316 2.7661 11 6 2.2560 7.6567 2.7849 12 7 1.2236 8.0230 3.7640 13 6 1.4933 8.9258 4.7575 14 1 0.9610 8.8712 5.6957 15 6 2.4507 9.9111 4.5590 16 7 2.8488 10.2055 3.3396 17 14 3.1741 10.8188 6.0226 18 1 4.4316 10.1521 6.4463 19 1 3.4637 12.2241 5.6396 20 1 2.2023 10.8019 7.1452 21 6 -0.1037 7.4017 3.6569 22 6 0.0654 5.8795 3.6281 23 6 3.5649 1.4444 -0.1258 24 9 3.9349 0.8189 -1.3211 25 9 4.0312 2.7634 -0.1252 26 9 4.1227 0.7525 0.9547 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 1.4871 1.5661 2.0463 33 1 1.0026 3.5096 3.2454 34 1 0.6397 5.8603 1.5516 35 1 2.7784 5.7895 3.7289 36 1 3.0918 5.8408 1.9768 37 1 1.9629 8.0087 1.7957 38 1 3.2055 8.1110 3.0678 39 1 3.5176 10.8943 3.2008 40 1 -0.5892 7.7329 2.7389 41 1 -0.7125 7.6856 4.5152 42 1 -0.9022 5.4092 3.4525 43 1 0.4675 5.5399 4.5826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311340487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:37 Heat of formation + Delta-G solvation = -172.442806 kcal Electronic energy + Delta-G solvation = -28842.973892 eV Core-core repulsion = 24315.411877 eV Total energy + Delta-G solvation = -4527.562015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.16091 -47.72262 -47.55299 -40.20026 -37.79098 -36.39868 -34.40181 -32.84870 -31.84633 -30.03452 -29.56402 -28.50847 -25.01849 -24.14199 -22.47520 -22.20339 -21.56429 -20.82389 -19.52781 -18.67356 -18.45069 -18.13278 -17.97689 -16.77902 -16.39609 -15.28662 -14.94418 -14.75134 -14.58629 -14.42811 -14.33584 -14.11033 -14.04060 -13.78169 -13.74196 -13.71567 -13.49178 -13.42488 -13.04967 -12.98502 -12.62882 -12.37189 -11.96071 -11.71563 -11.52023 -11.47497 -11.12263 -10.92671 -10.73456 -10.39625 -10.22079 -10.17849 -10.02608 -9.75148 -9.57569 -9.53062 -8.68851 -8.40386 -6.67801 -5.77150 -3.20156 2.33714 2.59889 3.24845 3.39089 3.45917 3.47432 3.60644 3.77623 3.99982 4.25146 4.45560 4.50648 4.52187 4.78058 5.02600 5.14706 5.29343 5.40657 5.42763 5.46211 5.49517 5.64970 5.75605 5.82635 6.01189 6.09091 6.23589 6.32815 6.43652 6.55294 6.66207 6.72594 6.85699 6.94224 7.01350 7.40292 7.70501 7.81238 7.97445 8.46341 8.60394 9.22211 9.85607 10.42289 11.31347 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.002921 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.721807 B = 9582.936941 C =10273.848390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.130 3.870 4 H 0.131 0.869 5 N -0.741 5.741 6 C 0.701 3.299 7 O -0.572 6.572 8 N -0.734 5.734 9 C 0.168 3.832 10 C -0.147 4.147 11 C 0.174 3.826 12 N -0.593 5.593 13 C -0.256 4.256 14 H 0.066 0.934 15 C 0.003 3.997 16 N -0.900 5.900 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.149 3.851 22 C -0.138 4.138 23 C 0.431 3.569 24 F -0.185 7.185 25 F -0.166 7.166 26 F -0.186 7.186 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.403 0.597 33 H 0.391 0.609 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.021 0.979 38 H 0.089 0.911 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 -23.724 -5.207 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.020 3.980 4 H 0.149 0.851 5 N -0.398 5.398 6 C 0.401 3.599 7 O -0.448 6.448 8 N -0.387 5.387 9 C 0.065 3.935 10 C -0.188 4.188 11 C 0.048 3.952 12 N -0.315 5.315 13 C -0.385 4.385 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.544 5.544 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.022 3.978 22 C -0.178 4.178 23 C 0.375 3.625 24 F -0.166 7.166 25 F -0.147 7.147 26 F -0.168 7.168 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.238 0.762 33 H 0.224 0.776 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.998 -22.885 -6.169 24.036 hybrid contribution 0.737 -0.058 1.438 1.617 sum -3.261 -22.943 -4.730 23.651 Atomic orbital electron populations 1.21713 0.93386 1.02445 1.02967 1.21873 0.98318 0.92366 1.04706 1.21927 0.87360 0.97298 0.91406 0.85123 1.45022 1.75856 1.06383 1.12551 1.16018 0.78202 0.81088 0.84619 1.90982 1.56381 1.63104 1.34337 1.45514 1.73488 1.09085 1.10601 1.20963 0.96998 0.75742 0.99798 1.22584 0.95400 1.00393 1.00406 1.20754 0.94919 0.87797 0.91776 1.44112 1.06008 1.47989 1.33422 1.19183 1.20680 1.06057 0.92602 0.91623 1.25061 1.01716 0.96747 0.96062 1.70042 1.33006 1.32578 1.18752 0.86280 0.79381 0.78856 0.82266 1.21492 1.21780 1.20403 1.20828 0.88983 0.89045 0.98974 1.22351 0.97448 1.00302 0.97728 1.21404 0.93473 0.74194 0.73454 1.93161 1.93230 1.82850 1.47395 1.93295 1.90411 1.35067 1.95968 1.93154 1.87873 1.79784 1.55967 0.91700 0.92024 0.91980 0.88982 0.90008 0.76219 0.77577 0.89920 0.92776 0.92706 0.96090 0.89325 0.93571 0.96179 0.92329 0.92645 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.80 37.16 0.36 -0.38 16 2 C -0.13 -0.76 5.23 -26.72 -0.14 -0.90 16 3 C 0.13 1.19 2.06 -67.92 -0.14 1.05 16 4 H 0.13 1.33 7.58 -51.93 -0.39 0.94 16 5 N -0.74 -7.19 4.45 -58.67 -0.26 -7.46 16 6 C 0.70 9.97 8.06 -86.92 -0.70 9.27 16 7 O -0.57 -10.67 14.58 5.29 0.08 -10.60 16 8 N -0.73 -9.85 5.08 -58.63 -0.30 -10.15 16 9 C 0.17 2.89 2.42 -67.89 -0.16 2.72 16 10 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 11 C 0.17 4.27 5.31 -3.71 -0.02 4.25 16 12 N -0.59 -14.78 2.99 -172.32 -0.52 -15.30 16 13 C -0.26 -6.98 9.58 -15.06 -0.14 -7.13 16 14 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 15 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 16 N -0.90 -26.45 11.22 55.49 0.62 -25.83 16 17 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.15 3.03 6.51 -3.71 -0.02 3.00 16 22 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 23 C 0.43 4.96 2.82 37.16 0.10 5.06 16 24 F -0.18 -2.02 16.71 2.25 0.04 -1.98 16 25 F -0.17 -2.58 15.67 2.25 0.04 -2.55 16 26 F -0.19 -2.09 16.81 2.25 0.04 -2.05 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.33 7.75 -51.92 -0.40 -0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.08 0.39 7.94 -51.93 -0.41 -0.02 16 32 H 0.40 2.68 8.62 -40.82 -0.35 2.33 16 33 H 0.39 3.97 8.62 -40.82 -0.35 3.62 16 34 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -32.90 357.40 -7.52 -40.41 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.36 Total: 1.96 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -1.25 Total: 11.44 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.45 Total: -58.73 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.90 -7.52 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311340487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.030 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds