Wall clock time and date at job start Tue Mar 31 2020 13:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.46799 * 2 1 4 4 H 1.08997 * 109.47072 * 304.99926 * 3 2 1 5 5 N 1.46500 * 109.47035 * 65.00371 * 3 2 1 6 6 C 1.34772 * 119.99470 * 204.99726 * 5 3 2 7 7 O 1.21589 * 120.00398 * 0.02562 * 6 5 3 8 8 N 1.34778 * 120.00095 * 179.97438 * 6 5 3 9 9 C 1.46495 * 120.00378 * 180.02562 * 8 6 5 10 10 C 1.53045 * 109.45951 * 275.02385 * 9 8 6 11 11 C 1.53189 * 109.31372 * 178.60158 * 10 9 8 12 12 N 1.46921 * 108.76872 * 54.65907 * 11 10 9 13 13 C 1.36927 * 120.63380 * 126.36281 * 12 11 10 14 14 H 1.08003 * 119.99648 * 208.02296 * 13 12 11 15 15 C 1.38814 * 120.00182 * 28.02176 * 13 12 11 16 16 N 1.31613 * 119.99814 * 17.51981 * 15 13 12 17 17 Si 1.86800 * 119.99791 * 197.52645 * 15 13 12 18 18 H 1.48507 * 109.46902 * 94.06607 * 17 15 13 19 19 H 1.48497 * 109.47098 * 214.06262 * 17 15 13 20 20 H 1.48494 * 109.47340 * 334.06655 * 17 15 13 21 21 C 1.46935 * 118.73426 * 306.38239 * 12 11 10 22 22 C 1.53042 * 109.46491 * 154.97215 * 9 8 6 23 23 C 1.53004 * 109.46456 * 185.00098 * 3 2 1 24 24 F 1.39896 * 109.47402 * 60.00242 * 23 3 2 25 25 F 1.39901 * 109.46502 * 180.02562 * 23 3 2 26 26 F 1.39900 * 109.47270 * 299.99857 * 23 3 2 27 27 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46974 * 300.00492 * 1 2 3 29 29 H 1.09000 * 109.47311 * 59.99531 * 1 2 3 30 30 H 1.08998 * 109.46812 * 240.00267 * 2 1 3 31 31 H 1.08991 * 109.47128 * 119.99672 * 2 1 3 32 32 H 0.96997 * 120.00157 * 24.99134 * 5 3 2 33 33 H 0.97006 * 119.99942 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46332 * 34.99607 * 9 8 6 35 35 H 1.09007 * 109.49611 * 298.56904 * 10 9 8 36 36 H 1.09006 * 109.49267 * 58.66286 * 10 9 8 37 37 H 1.09004 * 109.59528 * 294.86535 * 11 10 9 38 38 H 1.09000 * 109.69995 * 174.51077 * 11 10 9 39 39 H 0.97001 * 119.99897 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.58728 * 293.82244 * 21 12 11 41 41 H 1.08995 * 109.70187 * 173.46748 * 21 12 11 42 42 H 1.09002 * 109.49554 * 301.34034 * 22 9 8 43 43 H 1.09003 * 109.49556 * 61.42887 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 1.5256 3.4384 1.2996 7 8 1.7324 4.1045 0.3036 8 7 1.1686 4.0410 2.4510 9 6 1.0302 5.4985 2.5028 10 6 2.3985 6.1316 2.7661 11 6 2.2560 7.6567 2.7849 12 7 1.2236 8.0230 3.7640 13 6 1.4933 8.9258 4.7575 14 1 0.9610 8.8712 5.6957 15 6 2.4507 9.9111 4.5590 16 7 2.8488 10.2055 3.3396 17 14 3.1741 10.8188 6.0226 18 1 4.4316 10.1521 6.4463 19 1 3.4637 12.2241 5.6396 20 1 2.2023 10.8019 7.1452 21 6 -0.1037 7.4017 3.6569 22 6 0.0654 5.8795 3.6281 23 6 3.5649 1.4444 -0.1258 24 9 3.9349 0.8189 -1.3211 25 9 4.0312 2.7634 -0.1252 26 9 4.1227 0.7525 0.9547 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 1.4871 1.5661 2.0463 33 1 1.0026 3.5096 3.2454 34 1 0.6397 5.8603 1.5516 35 1 2.7784 5.7895 3.7289 36 1 3.0918 5.8408 1.9768 37 1 1.9629 8.0087 1.7957 38 1 3.2055 8.1110 3.0678 39 1 3.5176 10.8943 3.2008 40 1 -0.5892 7.7329 2.7389 41 1 -0.7125 7.6856 4.5152 42 1 -0.9022 5.4092 3.4525 43 1 0.4675 5.5399 4.5826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311340487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:36 Heat of formation + Delta-G solvation = -194.907696 kcal Electronic energy + Delta-G solvation = -28843.948042 eV Core-core repulsion = 24315.411877 eV Total energy + Delta-G solvation = -4528.536166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.10767 -48.62530 -48.58720 -41.34591 -39.26130 -37.41342 -35.95168 -34.14764 -33.16449 -31.69542 -31.11196 -29.44413 -26.86746 -24.93384 -23.94006 -23.82744 -22.42979 -22.01888 -21.10813 -19.68856 -19.44259 -19.22939 -18.93807 -18.59440 -17.47716 -16.83661 -16.19828 -16.11053 -15.73337 -15.46005 -15.34925 -15.34384 -15.26063 -15.03873 -14.85159 -14.74442 -14.74050 -14.67252 -14.32753 -14.09728 -13.97564 -13.66300 -13.18032 -13.02587 -12.67310 -12.61685 -12.54474 -12.24556 -12.11675 -12.02404 -11.95336 -11.85213 -11.53137 -11.46734 -11.22134 -10.60276 -10.54639 -9.89929 -8.71435 -7.87051 -5.33173 1.36710 1.47728 1.49244 1.58490 1.67422 2.15971 2.51958 2.78492 2.93147 3.02005 3.28511 3.36750 3.67869 3.70730 3.89203 3.95685 4.10372 4.31472 4.35744 4.44815 4.48845 4.68011 4.74807 4.81016 4.86573 5.01178 5.06119 5.07530 5.09879 5.14691 5.21329 5.33588 5.39803 5.46491 5.57621 5.64553 5.69808 5.90855 6.38930 7.01537 7.13655 7.51824 7.85025 8.37668 9.20008 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.002921 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.721807 B = 9582.936941 C =10273.848390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.133 3.867 4 H 0.120 0.880 5 N -0.720 5.720 6 C 0.699 3.301 7 O -0.619 6.619 8 N -0.720 5.720 9 C 0.182 3.818 10 C -0.131 4.131 11 C 0.184 3.816 12 N -0.610 5.610 13 C -0.261 4.261 14 H 0.075 0.925 15 C -0.055 4.055 16 N -0.938 5.938 17 Si 0.969 3.031 18 H -0.288 1.288 19 H -0.298 1.298 20 H -0.262 1.262 21 C 0.141 3.859 22 C -0.120 4.120 23 C 0.426 3.574 24 F -0.182 7.182 25 F -0.195 7.195 26 F -0.183 7.183 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.422 0.578 33 H 0.413 0.587 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.040 0.960 37 H -0.011 1.011 38 H 0.052 0.948 39 H 0.249 0.751 40 H 0.012 0.988 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.720 -26.593 -3.492 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.023 3.977 4 H 0.138 0.862 5 N -0.378 5.378 6 C 0.399 3.601 7 O -0.498 6.498 8 N -0.375 5.375 9 C 0.076 3.924 10 C -0.172 4.172 11 C 0.057 3.943 12 N -0.333 5.333 13 C -0.391 4.391 14 H 0.093 0.907 15 C -0.250 4.250 16 N -0.585 5.585 17 Si 0.797 3.203 18 H -0.215 1.215 19 H -0.225 1.225 20 H -0.187 1.187 21 C 0.015 3.985 22 C -0.159 4.159 23 C 0.370 3.630 24 F -0.163 7.163 25 F -0.176 7.176 26 F -0.165 7.165 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.260 0.740 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.007 0.993 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.030 0.970 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.444 -25.849 -4.401 26.780 hybrid contribution 1.162 0.782 0.841 1.634 sum -4.282 -25.067 -3.560 25.678 Atomic orbital electron populations 1.21717 0.92621 1.03421 1.02586 1.21912 0.98753 0.89609 1.06017 1.22095 0.85570 0.99395 0.90608 0.86240 1.44772 1.74490 1.04856 1.13720 1.16179 0.77725 0.82235 0.83961 1.90967 1.58213 1.64595 1.36059 1.45063 1.73335 1.07597 1.11458 1.20526 0.94954 0.77697 0.99190 1.22323 0.97430 0.97272 1.00126 1.20440 0.93300 0.90505 0.90071 1.44360 1.07892 1.48157 1.32907 1.19593 1.20251 1.05827 0.93419 0.90720 1.25877 1.02610 0.98140 0.98400 1.70216 1.33814 1.33488 1.20936 0.85229 0.78620 0.76961 0.79506 1.21509 1.22508 1.18651 1.21055 0.86774 0.91671 0.99001 1.22134 0.99131 0.96995 0.97641 1.21805 0.94615 0.73021 0.73595 1.93162 1.93334 1.82587 1.47257 1.93243 1.90914 1.37357 1.96127 1.93155 1.88019 1.79496 1.55784 0.90037 0.92031 0.92786 0.87978 0.88389 0.73972 0.75051 0.92319 0.92182 0.94097 0.99317 0.92966 0.94243 0.96987 0.91281 0.88705 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.80 71.98 0.71 -0.33 16 2 C -0.13 -1.05 5.23 30.60 0.16 -0.89 16 3 C 0.13 2.22 2.06 45.00 0.09 2.31 16 4 H 0.12 2.35 7.58 -2.39 -0.02 2.34 16 5 N -0.72 -12.40 4.45 -457.80 -2.04 -14.44 16 6 C 0.70 18.95 8.06 179.06 1.44 20.39 16 7 O -0.62 -23.27 14.58 -4.00 -0.06 -23.33 16 8 N -0.72 -17.64 5.08 -457.68 -2.33 -19.97 16 9 C 0.18 6.02 2.42 45.02 0.11 6.12 16 10 C -0.13 -5.36 5.65 30.67 0.17 -5.18 16 11 C 0.18 9.40 5.31 86.36 0.46 9.86 16 12 N -0.61 -30.69 2.99 -699.10 -2.09 -32.78 16 13 C -0.26 -14.27 9.58 84.04 0.81 -13.46 16 14 H 0.08 3.88 7.89 -2.91 -0.02 3.86 16 15 C -0.06 -3.12 4.90 84.86 0.42 -2.71 16 16 N -0.94 -57.36 11.22 21.65 0.24 -57.12 16 17 Si 0.97 45.24 29.59 68.60 2.03 47.27 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 19 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 C 0.14 5.55 6.51 86.36 0.56 6.12 16 22 C -0.12 -3.50 5.55 30.67 0.17 -3.33 16 23 C 0.43 9.39 2.82 71.98 0.20 9.59 16 24 F -0.18 -3.81 16.71 44.97 0.75 -3.05 16 25 F -0.19 -6.14 15.67 44.97 0.70 -5.43 16 26 F -0.18 -3.78 16.81 44.97 0.76 -3.02 16 27 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.06 0.45 7.75 -2.38 -0.02 0.43 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.72 7.66 -2.39 -0.02 0.70 16 31 H 0.10 0.56 7.94 -2.39 -0.02 0.54 16 32 H 0.42 4.13 8.62 -92.71 -0.80 3.33 16 33 H 0.41 6.76 8.62 -92.70 -0.80 5.96 16 34 H 0.06 2.28 7.58 -2.39 -0.02 2.26 16 35 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 37 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.05 3.03 6.06 -2.39 -0.01 3.02 16 39 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 2.56 7.94 -2.39 -0.02 2.54 16 42 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -75.00 357.40 2.72 -72.28 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -0.55 Total: 11.10 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 5.30 Total: 28.49 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -6.21 Total: -124.30 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.06 Total: -23.33 kcal Atomic # 9 Polarization: -13.72 SS G_CDS: 2.21 Total: -11.51 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.00 2.72 -72.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311340487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.629 kcal (2) G-P(sol) polarization free energy of solvation -74.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds