Wall clock time and date at job start Tue Mar 31 2020 14:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46839 * 2 1 4 4 C 1.50701 * 109.46550 * 119.99509 * 2 1 3 5 5 H 1.08001 * 119.99776 * 120.00481 * 4 2 1 6 6 C 1.37877 * 119.99923 * 299.99805 * 4 2 1 7 7 N 1.31511 * 120.00317 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99711 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47404 * 90.00052 * 8 6 4 10 10 H 1.48499 * 109.46939 * 210.00145 * 8 6 4 11 11 H 1.48500 * 109.47122 * 329.99804 * 8 6 4 12 12 N 1.46497 * 109.47236 * 239.99267 * 2 1 3 13 13 C 1.46496 * 120.00129 * 300.00469 * 12 2 1 14 14 C 1.34777 * 119.99525 * 119.99976 * 12 2 1 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 12 2 17 17 C 1.53015 * 109.46716 * 300.30442 * 16 14 12 18 18 C 1.53080 * 109.42144 * 179.50898 * 17 16 14 19 19 C 1.52472 * 109.58677 * 59.14309 * 18 17 16 20 20 C 1.52466 * 110.75540 * 301.44242 * 19 18 17 21 21 C 1.53017 * 109.46633 * 180.27839 * 16 14 12 22 22 N 1.46868 * 110.47905 * 178.69970 * 19 18 17 23 23 C 1.34672 * 106.42297 * 241.45493 * 22 19 18 24 24 O 1.21539 * 123.78918 * 179.97438 * 23 22 19 25 25 N 1.33871 * 112.42460 * 359.97438 * 23 22 19 26 26 C 1.34922 * 111.60557 * 0.02562 * 25 23 22 27 27 O 1.21226 * 127.25437 * 180.02562 * 26 25 23 28 28 H 1.08995 * 109.47124 * 300.00789 * 1 2 3 29 29 H 1.09011 * 109.46614 * 60.00514 * 1 2 3 30 30 H 1.08996 * 109.46839 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00155 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47115 * 269.99822 * 13 12 2 33 33 H 1.08995 * 109.47364 * 30.00213 * 13 12 2 34 34 H 1.09002 * 109.47090 * 149.99764 * 13 12 2 35 35 H 1.08995 * 109.47071 * 60.28951 * 16 14 12 36 36 H 1.08998 * 109.47999 * 299.48866 * 17 16 14 37 37 H 1.09000 * 109.48121 * 59.52252 * 17 16 14 38 38 H 1.08997 * 109.44677 * 299.10964 * 18 17 16 39 39 H 1.08993 * 109.45036 * 179.18459 * 18 17 16 40 40 H 1.08998 * 109.45152 * 298.52650 * 20 19 18 41 41 H 1.09000 * 109.45217 * 178.59345 * 20 19 18 42 42 H 1.09002 * 109.48021 * 300.47545 * 21 16 14 43 43 H 1.08995 * 109.48006 * 60.50973 * 21 16 14 44 44 H 0.97000 * 126.78989 * 61.46625 * 22 19 18 45 45 H 0.96993 * 124.19926 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3223 -1.1193 4.0081 9 1 3.6302 -0.5438 4.4121 10 1 1.3441 -0.9486 5.1123 11 1 2.4877 -2.5651 3.7125 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0832 15 8 3.0866 1.1253 -1.8912 16 6 3.3007 -0.7481 -3.3105 17 6 4.1474 -1.9508 -2.8885 18 6 4.6522 -2.6807 -4.1358 19 6 5.4835 -1.7258 -4.9854 20 6 4.6602 -0.5089 -5.3930 21 6 4.1554 0.2121 -4.1405 22 7 6.0040 -2.4152 -6.1732 23 6 7.3468 -2.3680 -6.0830 24 8 8.0971 -2.8495 -6.9091 25 7 7.7626 -1.7312 -4.9813 26 6 6.7245 -1.2967 -4.2370 27 8 6.7761 -0.6893 -3.1891 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7080 1.1612 3.4842 32 1 2.4157 -2.7378 -0.9714 33 1 0.6905 -2.3002 -0.9845 34 1 1.6238 -2.2854 -2.5000 35 1 2.4555 -1.0905 -3.9074 36 1 4.9977 -1.6078 -2.2990 37 1 3.5406 -2.6305 -2.2902 38 1 3.8017 -3.0369 -4.7170 39 1 5.2673 -3.5290 -3.8359 40 1 3.8098 -0.8308 -5.9941 41 1 5.2810 0.1702 -5.9774 42 1 3.5544 1.0728 -4.4340 43 1 5.0057 0.5477 -3.5469 44 1 5.4835 -2.8237 -6.8825 45 1 8.6944 -1.5986 -4.7471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318632515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:11 Heat of formation + Delta-G solvation = -81.993834 kcal Electronic energy + Delta-G solvation = -28938.935629 eV Core-core repulsion = 24957.152516 eV Total energy + Delta-G solvation = -3981.783113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.96152 -39.83827 -38.84850 -37.40008 -36.04501 -35.33416 -33.77509 -32.81759 -31.17307 -30.29955 -28.82572 -26.26721 -25.23266 -24.86265 -23.11885 -23.04141 -22.67729 -20.85717 -19.65225 -18.61001 -18.35353 -17.00965 -16.87802 -16.66831 -16.22625 -16.08163 -15.73363 -15.52823 -15.05280 -14.83304 -14.40291 -14.03603 -13.75744 -13.68326 -13.08750 -13.03032 -12.86022 -12.58631 -12.41838 -12.14276 -11.79469 -11.51184 -11.49829 -11.23268 -11.17897 -10.99800 -10.91017 -10.82048 -10.72006 -10.60509 -10.53206 -10.22711 -10.14566 -9.96972 -9.69560 -9.15358 -8.82759 -8.40613 -7.55945 -6.05884 -4.13610 1.36000 2.13495 2.71461 2.81911 3.27975 3.33956 3.35043 3.41319 3.64201 3.95050 4.20966 4.26695 4.40954 4.80398 4.82812 4.90767 5.06738 5.10019 5.20301 5.25135 5.28039 5.45496 5.51902 5.62859 5.63909 5.75025 5.81308 5.95955 6.01717 6.06308 6.23235 6.36900 6.40210 6.44667 6.62930 6.76658 6.82550 7.06738 7.17780 7.45312 7.54615 7.73364 7.83766 8.03221 8.21781 8.56223 8.85714 9.09795 9.53087 10.99421 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021643 B = 0.003279 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.436643 B = 8537.763596 C = 8999.715074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.593 5.593 13 C 0.085 3.915 14 C 0.509 3.491 15 O -0.549 6.549 16 C -0.102 4.102 17 C -0.132 4.132 18 C -0.107 4.107 19 C 0.121 3.879 20 C -0.110 4.110 21 C -0.106 4.106 22 N -0.718 5.718 23 C 0.706 3.294 24 O -0.550 6.550 25 N -0.684 5.684 26 C 0.528 3.472 27 O -0.439 6.439 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.440 0.560 45 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.556 -8.506 -17.689 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.324 5.324 13 C -0.059 4.059 14 C 0.295 3.705 15 O -0.428 6.428 16 C -0.124 4.124 17 C -0.170 4.170 18 C -0.146 4.146 19 C 0.030 3.970 20 C -0.148 4.148 21 C -0.145 4.145 22 N -0.382 5.382 23 C 0.405 3.595 24 O -0.425 6.425 25 N -0.356 5.356 26 C 0.313 3.687 27 O -0.305 6.305 28 H 0.112 0.888 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.284 0.716 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.948 -7.693 -17.267 19.817 hybrid contribution 0.495 -0.754 0.681 1.130 sum 6.443 -8.448 -16.586 19.697 Atomic orbital electron populations 1.22097 0.98359 0.99277 1.00810 1.18918 0.90741 0.94547 0.80058 0.91932 1.21317 1.31654 1.12937 0.90314 0.92325 1.24889 0.94965 0.94994 0.98952 1.69874 1.36411 1.22688 1.23707 0.86513 0.78677 0.79855 0.82444 1.20612 1.21172 1.19948 1.48195 1.49148 1.11449 1.23604 1.21682 1.01366 0.83589 0.99221 1.20263 0.78952 0.87020 0.84253 1.90651 1.58166 1.17278 1.76699 1.21270 0.98723 0.96348 0.96049 1.21959 1.01496 0.96692 0.96875 1.21667 0.99481 0.96789 0.96668 1.21226 0.94215 0.95546 0.85975 1.21704 0.99471 0.94219 0.99454 1.21470 1.01129 0.97556 0.94308 1.45614 1.05425 1.61035 1.26141 1.15908 0.83571 0.78594 0.81416 1.91050 1.57365 1.51153 1.42895 1.44458 1.12308 1.55043 1.23751 1.20680 0.85807 0.77875 0.84335 1.90900 1.85197 1.35323 1.19105 0.88845 0.97036 0.95150 0.92726 0.93086 0.91051 0.92785 0.89152 0.89531 0.88888 0.89415 0.90587 0.89565 0.90680 0.90151 0.89315 0.71587 0.72684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 2 C 0.26 6.48 2.64 -69.08 -0.18 6.30 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.52 -14.03 8.37 -34.44 -0.29 -14.32 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.14 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.59 -12.08 2.75 -175.27 -0.48 -12.56 16 13 C 0.09 1.32 8.04 59.84 0.48 1.80 16 14 C 0.51 10.01 7.08 -10.98 -0.08 9.94 16 15 O -0.55 -13.29 15.31 5.55 0.09 -13.20 16 16 C -0.10 -1.35 1.71 -91.75 -0.16 -1.51 16 17 C -0.13 -1.55 4.59 -26.68 -0.12 -1.67 16 18 C -0.11 -0.85 5.10 -26.96 -0.14 -0.99 16 19 C 0.12 1.00 1.01 -133.10 -0.13 0.87 16 20 C -0.11 -0.91 5.10 -26.96 -0.14 -1.05 16 21 C -0.11 -1.32 4.24 -26.68 -0.11 -1.44 16 22 N -0.72 -4.99 5.88 -53.87 -0.32 -5.31 16 23 C 0.71 6.86 9.00 -87.82 -0.79 6.07 16 24 O -0.55 -7.15 18.04 5.33 0.10 -7.06 16 25 N -0.68 -6.14 5.72 -15.85 -0.09 -6.24 16 26 C 0.53 5.65 7.02 -10.71 -0.08 5.57 16 27 O -0.44 -6.26 14.10 5.60 0.08 -6.18 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.01 0.24 8.14 -51.92 -0.42 -0.19 16 30 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.05 0.76 6.93 -51.93 -0.36 0.40 16 33 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 34 H 0.05 0.62 6.02 -51.93 -0.31 0.30 16 35 H 0.09 0.96 7.41 -51.93 -0.38 0.57 16 36 H 0.09 1.27 6.12 -51.93 -0.32 0.95 16 37 H 0.09 1.06 4.50 -51.93 -0.23 0.82 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 43 H 0.09 1.36 6.08 -51.93 -0.32 1.05 16 44 H 0.44 1.98 8.96 -40.82 -0.37 1.62 16 45 H 0.43 3.13 8.96 -40.82 -0.37 2.76 16 LS Contribution 347.92 15.07 5.24 5.24 Total: -1.00 -34.66 347.92 -7.35 -42.01 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.08 Total: 3.65 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.50 Total: 8.11 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.26 Total: -48.58 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: 0.26 Total: -26.44 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.66 -7.35 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318632515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.980 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds