Wall clock time and date at job start Tue Mar 31 2020 14:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46839 * 2 1 4 4 C 1.50701 * 109.46550 * 119.99509 * 2 1 3 5 5 H 1.08001 * 119.99776 * 120.00481 * 4 2 1 6 6 C 1.37877 * 119.99923 * 299.99805 * 4 2 1 7 7 N 1.31511 * 120.00317 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99711 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47404 * 90.00052 * 8 6 4 10 10 H 1.48499 * 109.46939 * 210.00145 * 8 6 4 11 11 H 1.48500 * 109.47122 * 329.99804 * 8 6 4 12 12 N 1.46497 * 109.47236 * 239.99267 * 2 1 3 13 13 C 1.46496 * 120.00129 * 300.00469 * 12 2 1 14 14 C 1.34777 * 119.99525 * 119.99976 * 12 2 1 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 12 2 17 17 C 1.53015 * 109.46716 * 300.30442 * 16 14 12 18 18 C 1.53080 * 109.42144 * 179.50898 * 17 16 14 19 19 C 1.52472 * 109.58677 * 59.14309 * 18 17 16 20 20 C 1.52466 * 110.75540 * 301.44242 * 19 18 17 21 21 C 1.53017 * 109.46633 * 180.27839 * 16 14 12 22 22 N 1.46868 * 110.47905 * 178.69970 * 19 18 17 23 23 C 1.34672 * 106.42297 * 241.45493 * 22 19 18 24 24 O 1.21539 * 123.78918 * 179.97438 * 23 22 19 25 25 N 1.33871 * 112.42460 * 359.97438 * 23 22 19 26 26 C 1.34922 * 111.60557 * 0.02562 * 25 23 22 27 27 O 1.21226 * 127.25437 * 180.02562 * 26 25 23 28 28 H 1.08995 * 109.47124 * 300.00789 * 1 2 3 29 29 H 1.09011 * 109.46614 * 60.00514 * 1 2 3 30 30 H 1.08996 * 109.46839 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00155 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47115 * 269.99822 * 13 12 2 33 33 H 1.08995 * 109.47364 * 30.00213 * 13 12 2 34 34 H 1.09002 * 109.47090 * 149.99764 * 13 12 2 35 35 H 1.08995 * 109.47071 * 60.28951 * 16 14 12 36 36 H 1.08998 * 109.47999 * 299.48866 * 17 16 14 37 37 H 1.09000 * 109.48121 * 59.52252 * 17 16 14 38 38 H 1.08997 * 109.44677 * 299.10964 * 18 17 16 39 39 H 1.08993 * 109.45036 * 179.18459 * 18 17 16 40 40 H 1.08998 * 109.45152 * 298.52650 * 20 19 18 41 41 H 1.09000 * 109.45217 * 178.59345 * 20 19 18 42 42 H 1.09002 * 109.48021 * 300.47545 * 21 16 14 43 43 H 1.08995 * 109.48006 * 60.50973 * 21 16 14 44 44 H 0.97000 * 126.78989 * 61.46625 * 22 19 18 45 45 H 0.96993 * 124.19926 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3223 -1.1193 4.0081 9 1 3.6302 -0.5438 4.4121 10 1 1.3441 -0.9486 5.1123 11 1 2.4877 -2.5651 3.7125 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0832 15 8 3.0866 1.1253 -1.8912 16 6 3.3007 -0.7481 -3.3105 17 6 4.1474 -1.9508 -2.8885 18 6 4.6522 -2.6807 -4.1358 19 6 5.4835 -1.7258 -4.9854 20 6 4.6602 -0.5089 -5.3930 21 6 4.1554 0.2121 -4.1405 22 7 6.0040 -2.4152 -6.1732 23 6 7.3468 -2.3680 -6.0830 24 8 8.0971 -2.8495 -6.9091 25 7 7.7626 -1.7312 -4.9813 26 6 6.7245 -1.2967 -4.2370 27 8 6.7761 -0.6893 -3.1891 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7080 1.1612 3.4842 32 1 2.4157 -2.7378 -0.9714 33 1 0.6905 -2.3002 -0.9845 34 1 1.6238 -2.2854 -2.5000 35 1 2.4555 -1.0905 -3.9074 36 1 4.9977 -1.6078 -2.2990 37 1 3.5406 -2.6305 -2.2902 38 1 3.8017 -3.0369 -4.7170 39 1 5.2673 -3.5290 -3.8359 40 1 3.8098 -0.8308 -5.9941 41 1 5.2810 0.1702 -5.9774 42 1 3.5544 1.0728 -4.4340 43 1 5.0057 0.5477 -3.5469 44 1 5.4835 -2.8237 -6.8825 45 1 8.6944 -1.5986 -4.7471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318632515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:10 Heat of formation + Delta-G solvation = -110.038934 kcal Electronic energy + Delta-G solvation = -28940.151755 eV Core-core repulsion = 24957.152516 eV Total energy + Delta-G solvation = -3982.999240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.73510 -41.12722 -39.87367 -38.38829 -37.18227 -36.87019 -34.94402 -34.35405 -32.14799 -31.55600 -30.19323 -27.64140 -27.27463 -25.82363 -24.04814 -23.84112 -23.69381 -22.28634 -20.59439 -19.84846 -19.39210 -18.50515 -17.79174 -17.70213 -17.61911 -17.21122 -16.94208 -16.58185 -16.35078 -16.08412 -15.63556 -15.40107 -14.91590 -14.57766 -14.55115 -14.22811 -14.01570 -13.66966 -13.52485 -13.43474 -13.23670 -12.95747 -12.86254 -12.74433 -12.57064 -12.52476 -12.18018 -12.11158 -12.10031 -11.99495 -11.84630 -11.51886 -11.41002 -11.12987 -10.82986 -10.57819 -10.41877 -10.32395 -9.23836 -8.13232 -6.29528 0.54430 1.40176 1.42296 1.44138 1.51484 1.90777 1.94295 2.11720 2.36241 2.55690 2.90277 3.14532 3.46623 3.52017 3.79467 3.92178 4.05046 4.21212 4.28957 4.34822 4.49482 4.56555 4.65471 4.73829 4.76927 4.84431 4.91144 4.92398 4.98467 5.02595 5.06697 5.09068 5.15143 5.19746 5.38593 5.46892 5.50540 5.68514 5.72461 5.84042 5.89682 6.08953 6.19746 6.43001 6.79541 6.94144 7.14572 7.36380 7.58172 8.90782 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021643 B = 0.003279 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.436643 B = 8537.763596 C = 8999.715074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.002 0.998 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.286 1.286 10 H -0.280 1.280 11 H -0.259 1.259 12 N -0.600 5.600 13 C 0.079 3.921 14 C 0.494 3.506 15 O -0.610 6.610 16 C -0.088 4.088 17 C -0.129 4.129 18 C -0.099 4.099 19 C 0.129 3.871 20 C -0.099 4.099 21 C -0.105 4.105 22 N -0.690 5.690 23 C 0.707 3.293 24 O -0.582 6.582 25 N -0.679 5.679 26 C 0.522 3.478 27 O -0.483 6.483 28 H 0.064 0.936 29 H 0.021 0.979 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.048 0.952 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.456 0.544 45 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -11.872 -20.102 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.020 0.980 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.212 1.212 10 H -0.205 1.205 11 H -0.183 1.183 12 N -0.330 5.330 13 C -0.063 4.063 14 C 0.283 3.717 15 O -0.493 6.493 16 C -0.109 4.109 17 C -0.167 4.167 18 C -0.137 4.137 19 C 0.038 3.962 20 C -0.138 4.138 21 C -0.144 4.144 22 N -0.356 5.356 23 C 0.407 3.593 24 O -0.459 6.459 25 N -0.350 5.350 26 C 0.309 3.691 27 O -0.353 6.353 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.154 0.846 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.151 0.849 39 H 0.104 0.896 40 H 0.147 0.853 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.304 0.696 45 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 5.158 -11.123 -19.728 23.228 hybrid contribution 0.778 0.375 1.446 1.684 sum 5.936 -10.748 -18.282 22.023 Atomic orbital electron populations 1.21865 0.97090 1.00203 0.99866 1.18472 0.91641 0.92007 0.82079 0.97955 1.21603 1.31564 1.12943 0.91259 0.92195 1.25730 0.95161 0.95687 1.02021 1.70023 1.37455 1.24008 1.24299 0.85509 0.77661 0.79383 0.78791 1.21217 1.20512 1.18312 1.48203 1.49199 1.13406 1.22234 1.22010 1.01171 0.80379 1.02719 1.21554 0.77757 0.86630 0.85739 1.90617 1.60029 1.20293 1.78315 1.21312 1.00301 0.96288 0.93018 1.21894 0.99986 0.96199 0.98624 1.21690 1.00959 0.96007 0.95055 1.21162 0.93005 0.95966 0.86093 1.21667 1.00865 0.93745 0.97477 1.21380 0.99501 0.97813 0.95665 1.45412 1.04214 1.60072 1.25868 1.15951 0.84207 0.78250 0.80926 1.91042 1.58302 1.52596 1.43939 1.44462 1.12641 1.54412 1.23452 1.21182 0.87085 0.77002 0.83848 1.90901 1.85919 1.37298 1.21164 0.91719 0.96008 0.93086 0.92750 0.92475 0.91445 0.87631 0.84620 0.93346 0.88073 0.84887 0.89627 0.85334 0.90221 0.91189 0.93273 0.69580 0.72157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 8.95 71.98 0.64 -5.64 16 2 C 0.26 13.58 2.64 44.25 0.12 13.69 16 3 H 0.00 0.16 6.90 -2.39 -0.02 0.14 16 4 C -0.54 -29.28 8.37 25.60 0.21 -29.07 16 5 H 0.06 3.18 7.65 -2.91 -0.02 3.15 16 6 C 0.01 0.74 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 8 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 9 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 12 N -0.60 -24.40 2.75 -826.81 -2.28 -26.68 16 13 C 0.08 2.21 8.04 127.77 1.03 3.24 16 14 C 0.49 19.69 7.08 87.66 0.62 20.31 16 15 O -0.61 -31.44 15.31 -3.04 -0.05 -31.49 16 16 C -0.09 -2.13 1.71 -11.53 -0.02 -2.15 16 17 C -0.13 -2.66 4.59 30.63 0.14 -2.52 16 18 C -0.10 -1.08 5.10 30.45 0.16 -0.92 16 19 C 0.13 1.68 1.01 2.57 0.00 1.68 16 20 C -0.10 -1.27 5.10 30.45 0.16 -1.11 16 21 C -0.10 -2.51 4.24 30.63 0.13 -2.38 16 22 N -0.69 -6.64 5.88 -442.68 -2.60 -9.25 16 23 C 0.71 12.00 9.00 179.37 1.61 13.61 16 24 O -0.58 -14.00 18.04 -3.84 -0.07 -14.07 16 25 N -0.68 -11.42 5.72 -441.18 -2.52 -13.94 16 26 C 0.52 10.69 7.02 87.77 0.62 11.31 16 27 O -0.48 -14.37 14.10 -2.86 -0.04 -14.41 16 28 H 0.06 3.47 6.07 -2.39 -0.01 3.45 16 29 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.05 2.16 6.66 -2.39 -0.02 2.15 16 31 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.06 1.54 6.93 -2.39 -0.02 1.52 16 33 H 0.07 1.95 6.43 -2.39 -0.02 1.94 16 34 H 0.11 1.84 6.02 -2.39 -0.01 1.82 16 35 H 0.14 2.09 7.41 -2.39 -0.02 2.07 16 36 H 0.05 1.41 6.12 -2.39 -0.01 1.39 16 37 H 0.10 1.92 4.50 -2.39 -0.01 1.91 16 38 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.79 8.09 -2.39 -0.02 1.77 16 43 H 0.05 1.58 6.08 -2.39 -0.01 1.57 16 44 H 0.46 1.61 8.96 -92.71 -0.83 0.78 16 45 H 0.44 6.20 8.96 -92.71 -0.83 5.37 16 Total: -1.00 -84.11 347.92 -0.02 -84.14 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.60 Total: 12.34 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 5.87 Total: 21.23 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -7.16 Total: -103.31 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: -0.16 Total: -59.97 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -84.11 -0.02 -84.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318632515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.902 kcal (2) G-P(sol) polarization free energy of solvation -84.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds