Wall clock time and date at job start Tue Mar 31 2020 13:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47287 * 2 1 4 4 H 1.08997 * 109.46995 * 305.53877 * 3 2 1 5 5 C 1.50701 * 109.47017 * 185.53646 * 3 2 1 6 6 H 1.07997 * 120.00273 * 245.59887 * 5 3 2 7 7 C 1.37883 * 120.00004 * 65.60777 * 5 3 2 8 8 N 1.31507 * 120.00103 * 196.26625 * 7 5 3 9 9 Si 1.86804 * 119.99910 * 16.25628 * 7 5 3 10 10 H 1.48502 * 109.46779 * 180.02562 * 9 7 5 11 11 H 1.48490 * 109.47402 * 300.00557 * 9 7 5 12 12 H 1.48506 * 109.46885 * 60.00851 * 9 7 5 13 13 N 1.46501 * 109.46953 * 65.53830 * 3 2 1 14 14 C 1.34779 * 120.00028 * 275.00284 * 13 3 2 15 15 O 1.21280 * 119.99609 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00204 * 180.02562 * 14 13 3 17 17 C 1.53016 * 109.46398 * 300.02175 * 16 14 13 18 18 C 1.53077 * 109.41865 * 179.50583 * 17 16 14 19 19 C 1.52468 * 109.58811 * 59.15010 * 18 17 16 20 20 C 1.52466 * 110.74804 * 301.43900 * 19 18 17 21 21 C 1.53011 * 109.46802 * 179.97438 * 16 14 13 22 22 N 1.46863 * 110.47823 * 178.69585 * 19 18 17 23 23 C 1.34674 * 106.42398 * 241.44767 * 22 19 18 24 24 O 1.21539 * 123.79176 * 180.02562 * 23 22 19 25 25 N 1.33874 * 112.41895 * 0.02562 * 23 22 19 26 26 C 1.34914 * 111.60929 * 359.97438 * 25 23 22 27 27 O 1.21226 * 127.25692 * 180.02562 * 26 25 23 28 28 H 1.09004 * 109.47217 * 59.99832 * 1 2 3 29 29 H 1.08999 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47334 * 299.99779 * 1 2 3 31 31 H 1.09002 * 109.47280 * 239.99669 * 2 1 3 32 32 H 1.09004 * 109.47217 * 120.00168 * 2 1 3 33 33 H 0.97004 * 119.99768 * 354.83466 * 8 7 5 34 34 H 0.97000 * 119.99654 * 95.00125 * 13 3 2 35 35 H 1.09002 * 109.47167 * 60.00230 * 16 14 13 36 36 H 1.08997 * 109.47897 * 299.49043 * 17 16 14 37 37 H 1.09003 * 109.47914 * 59.52461 * 17 16 14 38 38 H 1.08994 * 109.45296 * 299.10756 * 18 17 16 39 39 H 1.09005 * 109.45095 * 179.18245 * 18 17 16 40 40 H 1.08995 * 109.45398 * 298.52034 * 20 19 18 41 41 H 1.09005 * 109.45046 * 178.59881 * 20 19 18 42 42 H 1.09000 * 109.47765 * 300.47245 * 21 16 14 43 43 H 1.08994 * 109.48191 * 60.50802 * 21 16 14 44 44 H 0.96997 * 126.79307 * 61.47066 * 22 19 18 45 45 H 0.96996 * 124.19077 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8362 5 6 3.5408 1.4446 -0.1371 6 1 4.1566 1.8042 0.6740 7 6 4.1277 0.9877 -1.2981 8 7 5.4076 0.6862 -1.3133 9 14 3.1045 0.7967 -2.8493 10 1 3.9642 0.2924 -3.9502 11 1 2.0032 -0.1677 -2.6004 12 1 2.5330 2.1133 -3.2305 13 7 1.6635 2.0935 1.2573 14 6 0.4473 2.6600 1.3850 15 8 -0.3353 2.6312 0.4589 16 6 0.0602 3.3302 2.6780 17 6 0.1150 2.3102 3.8173 18 6 -0.2664 2.9949 5.1322 19 6 -1.6706 3.5776 5.0165 20 6 -1.7475 4.5779 3.8685 21 6 -1.3598 3.8873 2.5585 22 7 -2.0688 4.2130 6.2793 23 6 -3.1543 3.5458 6.7156 24 8 -3.7449 3.8144 7.7433 25 7 -3.5097 2.5536 5.8901 26 6 -2.6856 2.4744 4.8248 27 8 -2.7466 1.6848 3.9070 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.9551 0.8555 -0.5307 34 1 2.2897 2.1168 1.9977 35 1 0.7534 4.1451 2.8866 36 1 -0.5846 1.4996 3.6133 37 1 1.1249 1.9077 3.8966 38 1 0.4425 3.7953 5.3436 39 1 -0.2417 2.2654 5.9418 40 1 -1.0620 5.4035 4.0599 41 1 -2.7645 4.9621 3.7892 42 1 -1.4001 4.6078 1.7416 43 1 -2.0547 3.0717 2.3586 44 1 -1.6359 4.9648 6.7132 45 1 -4.2662 1.9652 6.0391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325494108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:03 Heat of formation + Delta-G solvation = -129.233282 kcal Electronic energy + Delta-G solvation = -28831.075572 eV Core-core repulsion = 24847.244003 eV Total energy + Delta-G solvation = -3983.831569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.74818 -41.08372 -39.90420 -38.46668 -37.21127 -36.71423 -34.59880 -34.38289 -33.12878 -31.94137 -30.78501 -28.97971 -25.85220 -24.36557 -23.89720 -23.82043 -23.56868 -21.94638 -21.11647 -20.49340 -19.70100 -19.40514 -17.85759 -17.76160 -17.66629 -17.29055 -16.88249 -16.56650 -16.29934 -16.03754 -15.66314 -15.35202 -14.91043 -14.62707 -14.59386 -14.50275 -14.28810 -13.91937 -13.83019 -13.61365 -13.35540 -13.26810 -12.78486 -12.64675 -12.43406 -12.27078 -12.21592 -12.06717 -11.86035 -11.76778 -11.58469 -11.43508 -11.36887 -11.07241 -10.85572 -10.49397 -10.45973 -10.43022 -9.70712 -8.76548 -6.41581 0.52561 1.42289 1.46225 1.49992 1.69322 1.90285 1.92674 2.09912 2.42009 2.58768 2.88401 3.03060 3.46143 3.49608 3.85226 3.90115 4.03779 4.22258 4.26562 4.33609 4.41845 4.42666 4.48688 4.57173 4.65764 4.73983 4.83467 4.91126 4.97398 5.02919 5.10374 5.11803 5.13097 5.24804 5.30566 5.34217 5.44704 5.57165 5.72727 5.75623 5.81545 5.87282 6.04466 6.40629 6.57252 6.97140 7.12072 7.32007 7.58387 8.62712 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029606 B = 0.003059 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.535142 B = 9150.797691 C = 9380.848884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.135 4.135 3 C 0.252 3.748 4 H 0.019 0.981 5 C -0.608 4.608 6 H 0.043 0.957 7 C -0.005 4.005 8 N -0.931 5.931 9 Si 1.069 2.931 10 H -0.284 1.284 11 H -0.248 1.248 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.501 3.499 15 O -0.584 6.584 16 C -0.096 4.096 17 C -0.116 4.116 18 C -0.102 4.102 19 C 0.128 3.872 20 C -0.102 4.102 21 C -0.103 4.103 22 N -0.694 5.694 23 C 0.707 3.293 24 O -0.582 6.582 25 N -0.677 5.677 26 C 0.526 3.474 27 O -0.478 6.478 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.258 0.742 34 H 0.402 0.598 35 H 0.126 0.874 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.455 0.545 45 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.236 8.303 17.205 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.147 3.853 4 H 0.037 0.963 5 C -0.646 4.646 6 H 0.061 0.939 7 C -0.206 4.206 8 N -0.566 5.566 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.172 1.172 12 H -0.200 1.200 13 N -0.352 5.352 14 C 0.289 3.711 15 O -0.465 6.465 16 C -0.117 4.117 17 C -0.154 4.154 18 C -0.140 4.140 19 C 0.038 3.962 20 C -0.141 4.141 21 C -0.141 4.141 22 N -0.359 5.359 23 C 0.406 3.594 24 O -0.459 6.459 25 N -0.348 5.348 26 C 0.312 3.688 27 O -0.348 6.348 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.237 0.763 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.103 0.897 40 H 0.139 0.861 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.302 0.698 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -14.971 7.513 15.002 22.486 hybrid contribution 0.419 0.253 1.878 1.941 sum -14.551 7.766 16.880 23.601 Atomic orbital electron populations 1.21746 0.95774 1.00004 1.01374 1.22244 0.95063 0.98744 1.01310 1.18676 0.93281 0.89449 0.83929 0.96320 1.22296 0.91571 1.47698 1.03075 0.93918 1.26721 0.97679 0.92271 1.03908 1.70977 1.08077 1.43505 1.34068 0.83734 0.75115 0.78553 0.73347 1.21026 1.17230 1.19987 1.46093 1.15860 1.56428 1.16831 1.21285 0.81154 0.78183 0.90472 1.90643 1.51694 1.60929 1.43239 1.21360 0.99637 0.99462 0.91213 1.21616 1.03360 0.97659 0.92812 1.21672 0.92376 1.02422 0.97557 1.21146 0.95999 0.92368 0.86737 1.21675 1.04675 0.97182 0.90528 1.21373 0.94815 1.00606 0.97336 1.45452 1.29873 1.36550 1.23994 1.15964 0.81557 0.79596 0.82261 1.91046 1.58783 1.70782 1.25286 1.44426 1.32691 1.33946 1.23766 1.21053 0.82377 0.84740 0.80599 1.90874 1.71783 1.39780 1.32335 0.94384 0.93067 0.93158 0.92643 0.92767 0.93220 0.76310 0.85632 0.92111 0.89508 0.85805 0.89681 0.86064 0.90048 0.90971 0.92275 0.69757 0.72016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.53 71.98 0.61 -4.64 16 2 C -0.13 -5.88 5.27 30.59 0.16 -5.71 16 3 C 0.25 11.63 1.82 44.25 0.08 11.71 16 4 H 0.02 0.97 6.26 -2.39 -0.01 0.95 16 5 C -0.61 -32.32 9.01 25.60 0.23 -32.09 16 6 H 0.04 2.37 7.96 -2.91 -0.02 2.35 16 7 C -0.01 -0.29 5.32 84.66 0.45 0.16 16 8 N -0.93 -55.71 13.69 21.45 0.29 -55.42 16 9 Si 1.07 50.32 26.27 68.60 1.80 52.13 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.25 -10.73 5.66 99.48 0.56 -10.17 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.70 -26.03 4.92 -446.10 -2.19 -28.23 16 14 C 0.50 17.01 5.75 87.65 0.50 17.52 16 15 O -0.58 -24.45 13.12 -3.03 -0.04 -24.49 16 16 C -0.10 -2.03 2.51 -11.53 -0.03 -2.06 16 17 C -0.12 -2.07 4.86 30.63 0.15 -1.92 16 18 C -0.10 -1.03 5.10 30.44 0.16 -0.87 16 19 C 0.13 1.48 1.01 2.57 0.00 1.48 16 20 C -0.10 -1.15 5.10 30.44 0.16 -1.00 16 21 C -0.10 -2.10 4.25 30.62 0.13 -1.97 16 22 N -0.69 -6.25 5.88 -442.69 -2.60 -8.85 16 23 C 0.71 11.16 9.00 179.37 1.61 12.78 16 24 O -0.58 -13.50 18.04 -3.84 -0.07 -13.57 16 25 N -0.68 -9.94 5.72 -441.19 -2.52 -12.46 16 26 C 0.53 9.24 7.02 87.77 0.62 9.86 16 27 O -0.48 -12.04 14.11 -2.86 -0.04 -12.08 16 28 H 0.04 1.59 7.88 -2.38 -0.02 1.57 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 2.00 5.63 -2.39 -0.01 1.99 16 31 H 0.06 2.53 4.74 -2.39 -0.01 2.52 16 32 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.26 15.42 8.73 -92.71 -0.81 14.61 16 34 H 0.40 12.93 7.93 -92.71 -0.74 12.19 16 35 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.45 6.11 -2.39 -0.01 1.43 16 37 H 0.09 1.45 7.55 -2.39 -0.02 1.44 16 38 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.07 1.60 8.09 -2.39 -0.02 1.59 16 43 H 0.06 1.59 6.08 -2.39 -0.01 1.58 16 44 H 0.45 1.65 8.96 -92.71 -0.83 0.82 16 45 H 0.44 5.19 8.96 -92.71 -0.83 4.36 16 Total: -1.00 -76.17 348.04 -2.05 -78.22 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -1.51 Total: 21.50 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 4.83 Total: 3.25 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -7.02 Total: -104.96 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -0.15 Total: -50.14 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 1.80 Total: 52.13 kcal Total: -76.17 -2.05 -78.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325494108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.009 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds