Wall clock time and date at job start Tue Mar 31 2020 14:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.46834 * 2 1 4 4 C 1.42897 * 113.99578 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46794 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47092 * 179.97438 * 5 4 3 7 7 C 1.34266 * 125.75542 * 124.99816 * 6 5 4 8 8 C 1.38039 * 107.41889 * 180.02562 * 7 6 5 9 9 C 1.47427 * 126.41507 * 179.97438 * 8 7 6 10 10 O 1.21599 * 120.00290 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00090 * 179.97438 * 9 8 7 12 12 C 1.47028 * 125.64528 * 359.97438 * 11 9 8 13 13 C 1.54320 * 107.26701 * 178.97328 * 12 11 9 14 14 C 1.55153 * 102.94383 * 337.80525 * 13 12 11 15 15 O 1.42895 * 111.00660 * 277.38826 * 14 13 12 16 16 C 1.50702 * 111.00367 * 153.57571 * 14 13 12 17 17 H 1.08002 * 120.00299 * 3.18452 * 16 14 13 18 18 C 1.37884 * 119.99942 * 182.90010 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47463 * 125.62905 * 179.97438 * 11 9 8 25 25 C 1.41297 * 107.16961 * 0.23583 * 8 7 6 26 26 N 1.30451 * 108.02083 * 359.59572 * 25 8 7 27 27 H 1.09006 * 109.47287 * 299.99588 * 1 2 3 28 28 H 1.08996 * 109.47714 * 59.99807 * 1 2 3 29 29 H 1.09003 * 109.46664 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46821 * 240.00460 * 2 1 3 31 31 H 1.08999 * 109.47227 * 120.00274 * 2 1 3 32 32 H 1.09000 * 109.47514 * 60.00536 * 4 3 2 33 33 H 1.09002 * 109.47563 * 299.99380 * 4 3 2 34 34 H 1.08995 * 109.47428 * 59.99965 * 5 4 3 35 35 H 1.09001 * 109.47128 * 299.99741 * 5 4 3 36 36 H 1.08005 * 126.28538 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.88086 * 59.55751 * 12 11 9 38 38 H 1.09003 * 109.87956 * 298.38740 * 12 11 9 39 39 H 1.09004 * 110.71836 * 219.43859 * 13 12 11 40 40 H 1.09007 * 110.87067 * 96.24178 * 13 12 11 41 41 H 0.96695 * 114.00567 * 176.81707 * 15 14 13 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.34826 * 85.25519 * 24 11 9 44 44 H 1.09002 * 110.40574 * 322.91736 * 24 11 9 45 45 H 1.07997 * 125.98718 * 179.73375 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9385 0.0001 6 7 5.2857 3.0542 0.0001 7 6 6.0184 3.7396 -0.8921 8 6 7.3443 3.5941 -0.5368 9 6 8.5060 4.1754 -1.2340 10 8 8.3404 4.8589 -2.2259 11 7 9.7518 3.9492 -0.7719 12 6 10.0942 3.1461 0.4111 13 6 11.6323 3.1472 0.5360 14 6 12.0978 3.4802 -0.9061 15 8 12.1124 2.3080 -1.7231 16 6 13.4499 4.1457 -0.8971 17 1 13.9789 4.2813 0.0347 18 6 14.0143 4.5761 -2.0792 19 7 13.3702 4.4110 -3.2138 20 14 15.6936 5.3940 -2.0689 21 1 16.7483 4.3612 -2.2304 22 1 15.7776 6.3663 -3.1883 23 1 15.8903 6.1049 -0.7800 24 6 10.9967 4.4665 -1.3694 25 6 7.3800 2.7787 0.6166 26 7 6.1523 2.4686 0.9298 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8332 0.9768 -0.8908 33 1 3.8340 0.9766 0.8892 34 1 3.4229 3.4215 0.8905 35 1 3.4221 3.4225 -0.8894 36 1 5.6398 4.3014 -1.7333 37 1 9.7333 2.1255 0.2834 38 1 9.6496 3.5901 1.3019 39 1 11.9951 2.1658 0.8415 40 1 11.9646 3.9145 1.2354 41 1 12.3499 2.4744 -2.6456 42 1 13.7671 4.7142 -4.0454 43 1 11.2063 5.4701 -0.9994 44 1 10.9236 4.4697 -2.4569 45 1 8.2681 2.4687 1.1473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331133313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:49 Heat of formation + Delta-G solvation = -44.414529 kcal Electronic energy + Delta-G solvation = -27101.730067 eV Core-core repulsion = 23121.576515 eV Total energy + Delta-G solvation = -3980.153552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38859 -39.06338 -38.50221 -36.98910 -34.50253 -34.02470 -32.16692 -31.74223 -30.49071 -29.98869 -28.91581 -27.62865 -25.28049 -23.73777 -23.37253 -23.22862 -21.38278 -20.70638 -19.58657 -19.05691 -17.54898 -17.15360 -16.83090 -16.68988 -15.79490 -15.66408 -15.26400 -15.00564 -14.77146 -14.58364 -14.16321 -14.09187 -14.03637 -13.10014 -13.06260 -12.96754 -12.86828 -12.66312 -12.60916 -12.30245 -11.96742 -11.63868 -11.60606 -11.55174 -11.34277 -11.04232 -10.96462 -10.72356 -10.56702 -10.45427 -10.16931 -10.08804 -9.62892 -9.40413 -9.27985 -8.67531 -8.65623 -8.33977 -7.70765 -6.26584 -4.36028 1.57423 2.07179 2.31618 3.21896 3.28103 3.29729 3.32023 3.72430 3.91237 4.25401 4.29270 4.46227 4.59656 4.74868 4.77141 4.80614 4.86344 4.93420 5.00197 5.15648 5.18004 5.25663 5.32166 5.41196 5.45239 5.52709 5.65838 5.66350 5.68615 5.83139 6.02621 6.23194 6.44623 6.52329 6.62709 6.75270 6.76707 6.88950 7.06379 7.29030 7.38489 7.51729 7.76182 8.03017 8.31006 8.67248 8.86498 9.33062 9.43702 10.80635 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.035100 B = 0.002207 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.535808 B =12686.151089 C =12876.160723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.390 6.390 4 C 0.053 3.947 5 C 0.137 3.863 6 N -0.367 5.367 7 C 0.123 3.877 8 C -0.275 4.275 9 C 0.598 3.402 10 O -0.561 6.561 11 N -0.603 5.603 12 C 0.099 3.901 13 C -0.120 4.120 14 C 0.248 3.752 15 O -0.583 6.583 16 C -0.538 4.538 17 H 0.067 0.933 18 C 0.071 3.929 19 N -0.893 5.893 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.097 3.903 25 C 0.073 3.927 26 N -0.303 5.303 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.188 0.812 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.384 0.616 42 H 0.270 0.730 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.201 -6.212 7.113 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.308 6.308 4 C -0.025 4.025 5 C 0.015 3.985 6 N -0.148 5.148 7 C -0.027 4.027 8 C -0.289 4.289 9 C 0.387 3.613 10 O -0.441 6.441 11 N -0.335 5.335 12 C -0.024 4.024 13 C -0.157 4.157 14 C 0.208 3.792 15 O -0.393 6.393 16 C -0.576 4.576 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.532 5.532 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.024 4.024 25 C -0.114 4.114 26 N -0.123 5.123 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.205 0.795 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.234 0.766 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -21.561 -6.576 7.756 23.838 hybrid contribution 1.733 0.928 -1.175 2.290 sum -19.828 -5.648 6.580 21.642 Atomic orbital electron populations 1.21754 0.93422 1.02459 1.03233 1.22497 0.95664 0.83052 1.00500 1.87776 1.20105 1.27333 1.95635 1.22605 0.81709 0.96018 1.02146 1.21424 0.74348 0.97196 1.05484 1.48283 1.06393 1.38914 1.21187 1.22938 0.90792 0.94757 0.94212 1.20432 0.93605 1.11999 1.02884 1.16827 0.81104 0.80154 0.83226 1.90736 1.85371 1.41283 1.26736 1.48487 1.06088 1.50228 1.28695 1.22277 0.97745 0.94746 0.87661 1.22656 0.91809 1.02218 0.99063 1.19614 0.91624 0.82358 0.85650 1.86078 1.92615 1.34598 1.25976 1.21488 1.02668 1.39380 0.94070 0.91497 1.25082 0.98075 0.94707 0.95383 1.69656 1.38275 1.46905 0.98383 0.86402 0.83448 0.79155 0.77887 1.20427 1.21034 1.19707 1.23265 0.81150 0.98108 0.99923 1.24878 0.95881 0.95338 0.95348 1.77133 1.00380 1.21248 1.13570 0.91747 0.91745 0.90896 0.93135 0.93062 0.92550 0.91476 0.88537 0.87468 0.79519 0.91797 0.92319 0.90642 0.90323 0.76555 0.91960 0.92133 0.89720 0.78189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.43 16 2 C 0.06 0.41 6.66 37.16 0.25 0.65 16 3 O -0.39 -3.45 10.34 -35.23 -0.36 -3.81 16 4 C 0.05 0.46 6.11 37.16 0.23 0.69 16 5 C 0.14 1.17 6.86 -4.04 -0.03 1.14 16 6 N -0.37 -4.41 3.65 -60.81 -0.22 -4.64 16 7 C 0.12 1.65 11.25 -16.56 -0.19 1.47 16 8 C -0.27 -4.50 6.09 -105.07 -0.64 -5.14 16 9 C 0.60 12.29 7.85 -12.52 -0.10 12.19 16 10 O -0.56 -13.31 17.15 5.28 0.09 -13.22 16 11 N -0.60 -12.50 3.33 -171.75 -0.57 -13.07 16 12 C 0.10 1.70 4.98 -3.06 -0.02 1.68 16 13 C -0.12 -2.31 6.13 -24.90 -0.15 -2.46 16 14 C 0.25 5.93 0.88 -89.62 -0.08 5.85 16 15 O -0.58 -14.80 13.17 -35.23 -0.46 -15.27 16 16 C -0.54 -13.83 8.25 -34.44 -0.28 -14.11 16 17 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 18 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 19 N -0.89 -23.74 10.69 55.43 0.59 -23.15 16 20 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.10 2.32 5.51 -2.51 -0.01 2.30 16 25 C 0.07 1.05 10.45 -16.98 -0.18 0.87 16 26 N -0.30 -4.20 12.33 30.86 0.38 -3.82 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.11 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 37 H 0.06 1.02 6.81 -51.93 -0.35 0.67 16 38 H 0.06 0.84 7.02 -51.93 -0.36 0.47 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.08 1.42 8.02 -51.93 -0.42 1.01 16 41 H 0.38 10.08 7.24 45.56 0.33 10.41 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 44 H 0.08 2.29 7.48 -51.93 -0.39 1.90 16 45 H 0.20 2.54 4.47 -52.49 -0.23 2.31 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -31.52 372.68 -6.91 -38.43 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.03 Total: 11.26 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -0.91 Total: 6.45 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.18 Total: -44.68 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.74 Total: -32.30 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.52 -6.91 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331133313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.984 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds