Wall clock time and date at job start Tue Mar 31 2020 14:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.46834 * 2 1 4 4 C 1.42897 * 113.99578 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46794 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47092 * 179.97438 * 5 4 3 7 7 C 1.34266 * 125.75542 * 124.99816 * 6 5 4 8 8 C 1.38039 * 107.41889 * 180.02562 * 7 6 5 9 9 C 1.47427 * 126.41507 * 179.97438 * 8 7 6 10 10 O 1.21599 * 120.00290 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00090 * 179.97438 * 9 8 7 12 12 C 1.47028 * 125.64528 * 359.97438 * 11 9 8 13 13 C 1.54320 * 107.26701 * 178.97328 * 12 11 9 14 14 C 1.55153 * 102.94383 * 337.80525 * 13 12 11 15 15 O 1.42895 * 111.00660 * 277.38826 * 14 13 12 16 16 C 1.50702 * 111.00367 * 153.57571 * 14 13 12 17 17 H 1.08002 * 120.00299 * 3.18452 * 16 14 13 18 18 C 1.37884 * 119.99942 * 182.90010 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47463 * 125.62905 * 179.97438 * 11 9 8 25 25 C 1.41297 * 107.16961 * 0.23583 * 8 7 6 26 26 N 1.30451 * 108.02083 * 359.59572 * 25 8 7 27 27 H 1.09006 * 109.47287 * 299.99588 * 1 2 3 28 28 H 1.08996 * 109.47714 * 59.99807 * 1 2 3 29 29 H 1.09003 * 109.46664 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46821 * 240.00460 * 2 1 3 31 31 H 1.08999 * 109.47227 * 120.00274 * 2 1 3 32 32 H 1.09000 * 109.47514 * 60.00536 * 4 3 2 33 33 H 1.09002 * 109.47563 * 299.99380 * 4 3 2 34 34 H 1.08995 * 109.47428 * 59.99965 * 5 4 3 35 35 H 1.09001 * 109.47128 * 299.99741 * 5 4 3 36 36 H 1.08005 * 126.28538 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.88086 * 59.55751 * 12 11 9 38 38 H 1.09003 * 109.87956 * 298.38740 * 12 11 9 39 39 H 1.09004 * 110.71836 * 219.43859 * 13 12 11 40 40 H 1.09007 * 110.87067 * 96.24178 * 13 12 11 41 41 H 0.96695 * 114.00567 * 176.81707 * 15 14 13 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.34826 * 85.25519 * 24 11 9 44 44 H 1.09002 * 110.40574 * 322.91736 * 24 11 9 45 45 H 1.07997 * 125.98718 * 179.73375 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9385 0.0001 6 7 5.2857 3.0542 0.0001 7 6 6.0184 3.7396 -0.8921 8 6 7.3443 3.5941 -0.5368 9 6 8.5060 4.1754 -1.2340 10 8 8.3404 4.8589 -2.2259 11 7 9.7518 3.9492 -0.7719 12 6 10.0942 3.1461 0.4111 13 6 11.6323 3.1472 0.5360 14 6 12.0978 3.4802 -0.9061 15 8 12.1124 2.3080 -1.7231 16 6 13.4499 4.1457 -0.8971 17 1 13.9789 4.2813 0.0347 18 6 14.0143 4.5761 -2.0792 19 7 13.3702 4.4110 -3.2138 20 14 15.6936 5.3940 -2.0689 21 1 16.7483 4.3612 -2.2304 22 1 15.7776 6.3663 -3.1883 23 1 15.8903 6.1049 -0.7800 24 6 10.9967 4.4665 -1.3694 25 6 7.3800 2.7787 0.6166 26 7 6.1523 2.4686 0.9298 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8332 0.9768 -0.8908 33 1 3.8340 0.9766 0.8892 34 1 3.4229 3.4215 0.8905 35 1 3.4221 3.4225 -0.8894 36 1 5.6398 4.3014 -1.7333 37 1 9.7333 2.1255 0.2834 38 1 9.6496 3.5901 1.3019 39 1 11.9951 2.1658 0.8415 40 1 11.9646 3.9145 1.2354 41 1 12.3499 2.4744 -2.6456 42 1 13.7671 4.7142 -4.0454 43 1 11.2063 5.4701 -0.9994 44 1 10.9236 4.4697 -2.4569 45 1 8.2681 2.4687 1.1473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331133313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:48 Heat of formation + Delta-G solvation = -67.597653 kcal Electronic energy + Delta-G solvation = -27102.735363 eV Core-core repulsion = 23121.576515 eV Total energy + Delta-G solvation = -3981.158848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.49288 -40.63938 -39.17238 -38.71079 -36.11617 -35.06573 -34.16368 -32.38689 -31.95478 -31.25064 -30.10110 -29.10868 -27.04694 -24.89007 -24.60545 -23.74739 -22.66957 -21.82299 -21.29087 -20.43216 -19.10124 -18.49235 -17.78100 -17.50646 -17.12835 -16.91958 -16.75262 -16.40412 -16.21916 -15.94119 -15.37195 -15.11234 -14.93638 -14.76031 -14.62782 -14.51453 -13.94672 -13.65340 -13.44948 -13.33088 -13.30279 -13.10302 -12.93237 -12.82613 -12.41616 -12.32860 -12.24731 -12.18704 -12.16749 -12.06134 -11.92393 -11.18540 -10.92063 -10.70742 -10.64204 -10.61878 -10.27352 -9.86401 -9.35709 -8.22743 -6.39496 0.45942 1.10575 1.18233 1.43844 1.45851 1.55430 2.19214 2.41312 2.45111 2.63032 3.03547 3.43438 3.78005 3.79664 3.82169 3.82794 3.96870 4.12523 4.16411 4.18909 4.24118 4.29720 4.34317 4.38571 4.46186 4.54282 4.58576 4.65014 4.75521 4.79628 4.85287 5.01130 5.08719 5.12949 5.25725 5.29794 5.37649 5.46860 5.52815 5.75361 5.79146 6.06600 6.08933 6.44401 6.66262 6.76817 7.26878 7.32445 7.39106 8.82736 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.035100 B = 0.002207 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.535808 B =12686.151089 C =12876.160723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.400 6.400 4 C 0.059 3.941 5 C 0.131 3.869 6 N -0.355 5.355 7 C 0.140 3.860 8 C -0.307 4.307 9 C 0.593 3.407 10 O -0.606 6.606 11 N -0.610 5.610 12 C 0.101 3.899 13 C -0.114 4.114 14 C 0.231 3.769 15 O -0.589 6.589 16 C -0.555 4.555 17 H 0.071 0.929 18 C 0.025 3.975 19 N -0.917 5.917 20 Si 0.964 3.036 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.111 3.889 25 C 0.078 3.922 26 N -0.311 5.311 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.209 0.791 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.374 0.626 42 H 0.269 0.731 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.598 -6.833 8.886 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.319 6.319 4 C -0.019 4.019 5 C 0.011 3.989 6 N -0.135 5.135 7 C -0.012 4.012 8 C -0.321 4.321 9 C 0.385 3.615 10 O -0.490 6.490 11 N -0.341 5.341 12 C -0.021 4.021 13 C -0.152 4.152 14 C 0.190 3.810 15 O -0.397 6.397 16 C -0.593 4.593 17 H 0.089 0.911 18 C -0.176 4.176 19 N -0.557 5.557 20 Si 0.790 3.210 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.012 4.012 25 C -0.109 4.109 26 N -0.131 5.131 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.151 0.849 36 H 0.226 0.774 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.224 0.776 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -22.991 -7.236 9.590 25.940 hybrid contribution 2.039 1.088 -1.731 2.888 sum -20.952 -6.148 7.859 23.206 Atomic orbital electron populations 1.21768 0.92360 1.03518 1.02977 1.22697 0.96581 0.82281 1.00954 1.87762 1.19886 1.28582 1.95672 1.22479 0.81885 0.95926 1.01582 1.21756 0.72169 0.97556 1.07404 1.48523 1.07492 1.37454 1.19989 1.23229 0.90068 0.93683 0.94210 1.20140 0.93055 1.14456 1.04487 1.17429 0.81856 0.79453 0.82795 1.90695 1.86051 1.43419 1.28838 1.48525 1.05318 1.50610 1.29613 1.22484 0.96468 0.95549 0.87599 1.22671 0.93204 1.03305 0.95986 1.19874 0.91079 0.82016 0.87983 1.86069 1.92589 1.35484 1.25538 1.21840 1.03677 1.39533 0.94269 0.91133 1.25840 1.01288 0.95308 0.95161 1.69780 1.39516 1.47624 0.98759 0.85455 0.79512 0.78158 0.77897 1.20074 1.21274 1.18895 1.22805 0.83318 0.97698 0.97418 1.25019 0.96645 0.94649 0.94611 1.77124 1.00304 1.21500 1.14127 0.91973 0.91991 0.89230 0.92700 0.92616 0.92885 0.92312 0.87332 0.84923 0.77447 0.90139 0.88543 0.89388 0.89064 0.77613 0.92153 0.93736 0.93891 0.76776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.40 -6.29 10.34 -148.98 -1.54 -7.83 16 4 C 0.06 0.90 6.11 71.98 0.44 1.34 16 5 C 0.13 1.86 6.86 86.38 0.59 2.45 16 6 N -0.36 -7.61 3.65 -346.29 -1.26 -8.87 16 7 C 0.14 3.48 11.25 84.27 0.95 4.43 16 8 C -0.31 -9.63 6.09 -20.15 -0.12 -9.75 16 9 C 0.59 24.53 7.85 86.66 0.68 25.21 16 10 O -0.61 -29.68 17.15 -4.03 -0.07 -29.75 16 11 N -0.61 -25.33 3.33 -815.54 -2.71 -28.04 16 12 C 0.10 3.26 4.98 86.73 0.43 3.69 16 13 C -0.11 -4.22 6.13 31.78 0.19 -4.02 16 14 C 0.23 11.14 0.88 -10.15 -0.01 11.13 16 15 O -0.59 -30.44 13.17 -148.98 -1.96 -32.41 16 16 C -0.55 -28.74 8.25 25.60 0.21 -28.53 16 17 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 18 C 0.02 1.29 5.29 84.66 0.45 1.74 16 19 N -0.92 -50.34 10.69 21.45 0.23 -50.11 16 20 Si 0.96 41.81 29.54 68.60 2.03 43.83 16 21 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 C 0.11 5.48 5.51 86.85 0.48 5.96 16 25 C 0.08 2.06 10.45 85.65 0.89 2.96 16 26 N -0.31 -7.81 12.33 -56.27 -0.69 -8.51 16 27 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.13 1.26 8.06 -2.39 -0.02 1.24 16 36 H 0.21 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.08 2.36 6.81 -2.39 -0.02 2.34 16 38 H 0.10 2.43 7.02 -2.39 -0.02 2.41 16 39 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 40 H 0.09 3.12 8.02 -2.38 -0.02 3.10 16 41 H 0.37 20.50 7.24 -74.06 -0.54 19.96 16 42 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 43 H 0.04 2.28 8.03 -2.39 -0.02 2.26 16 44 H 0.04 2.45 7.48 -2.39 -0.02 2.44 16 45 H 0.22 4.79 4.47 -2.91 -0.01 4.77 16 Total: -1.00 -70.04 372.68 0.89 -69.15 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.47 Total: 35.44 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 6.41 Total: 17.09 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.44 Total: -95.53 kcal Atomic # 8 Polarization: -66.41 SS G_CDS: -3.57 Total: -69.98 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -70.04 0.89 -69.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331133313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.553 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds