Wall clock time and date at job start Tue Mar 31 2020 14:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46897 * 110.99939 * 85.00277 * 13 2 1 15 15 H 1.08991 * 109.47431 * 325.00008 * 14 13 2 16 16 C 1.53004 * 109.47063 * 85.00354 * 14 13 2 17 17 C 1.50705 * 109.47204 * 204.99765 * 14 13 2 18 18 N 1.30112 * 124.94656 * 314.70087 * 17 14 13 19 19 C 1.35786 * 109.63645 * 179.88738 * 18 17 14 20 20 C 1.39743 * 133.59669 * 180.12788 * 19 18 17 21 21 C 1.36607 * 119.88557 * 180.30040 * 20 19 18 22 22 C 1.38777 * 120.66900 * 359.95744 * 21 20 19 23 23 C 1.37856 * 120.45232 * 0.02562 * 22 21 20 24 24 C 1.38839 * 119.68546 * 359.97438 * 23 22 21 25 25 N 1.36036 * 124.94921 * 134.99841 * 17 14 13 26 26 C 1.46501 * 126.34886 * 359.97438 * 25 17 14 27 27 F 1.39899 * 109.46813 * 210.00064 * 26 25 17 28 28 F 1.39897 * 109.46967 * 329.99404 * 26 25 17 29 29 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 30 30 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 31 31 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 33 33 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 34 34 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 35 35 H 1.00903 * 111.00114 * 208.95700 * 13 2 1 36 36 H 1.09002 * 109.46969 * 299.99975 * 16 14 13 37 37 H 1.08999 * 109.47497 * 59.99287 * 16 14 13 38 38 H 1.08995 * 109.47165 * 180.02562 * 16 14 13 39 39 H 1.07998 * 120.06050 * 0.28232 * 20 19 18 40 40 H 1.07997 * 119.66841 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.77890 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.15864 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.46716 * 89.99793 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 5.5419 -1.1100 2.4076 9 14 3.3018 -2.1131 3.6927 10 1 3.1647 -3.5418 3.3115 11 1 4.0487 -2.0116 4.9722 12 1 1.9534 -1.5133 3.8578 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2224 -2.3469 15 1 1.2577 0.9328 -2.2908 16 6 3.4112 0.9806 -2.3224 17 6 1.9786 -0.5678 -3.6259 18 7 2.6293 -1.6659 -3.8785 19 6 2.3012 -2.1162 -5.1167 20 6 2.6913 -3.2241 -5.8739 21 6 2.1759 -3.4088 -7.1254 22 6 1.2650 -2.5063 -7.6562 23 6 0.8655 -1.4065 -6.9273 24 6 1.3788 -1.2024 -5.6534 25 7 1.1952 -0.2340 -4.6868 26 6 0.3191 0.9360 -4.7851 27 9 -0.7703 0.6348 -5.6095 28 9 -0.1424 1.2814 -3.5104 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7515 -1.7715 1.2057 33 1 1.6053 -0.2617 2.1370 34 1 6.0266 -1.5199 3.1411 35 1 2.9172 -1.1207 -1.0287 36 1 3.4864 1.5522 -1.3974 37 1 4.2360 0.2702 -2.3785 38 1 3.4576 1.6599 -3.1736 39 1 3.3992 -3.9329 -5.4704 40 1 2.4801 -4.2660 -7.7077 41 1 0.8664 -2.6665 -8.6470 42 1 0.1567 -0.7069 -7.3451 43 1 0.8755 1.7719 -5.2090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348454131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:45 Heat of formation + Delta-G solvation = -18.585183 kcal Electronic energy + Delta-G solvation = -27972.878793 eV Core-core repulsion = 23882.757770 eV Total energy + Delta-G solvation = -4090.121023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.69942 -47.82554 -42.19159 -37.91184 -36.88745 -33.91889 -33.34533 -31.96573 -30.50181 -29.04038 -28.03634 -27.61203 -26.32839 -24.29889 -22.68240 -22.28827 -21.59709 -20.36635 -19.52762 -18.51379 -18.33198 -17.77787 -16.87202 -16.77139 -15.82811 -15.40042 -15.24423 -15.08102 -14.57058 -14.55843 -14.26385 -14.07862 -13.96289 -13.83654 -13.51041 -12.92695 -12.76216 -12.71687 -12.26047 -12.16436 -12.11424 -11.74053 -11.69629 -11.52449 -11.44308 -11.15891 -10.97404 -10.72655 -10.69954 -10.29565 -9.91472 -9.81261 -9.50289 -9.21340 -8.53766 -8.52171 -8.19682 -7.80255 -6.05002 -4.03493 0.85101 1.33239 1.80370 2.69136 3.13803 3.33690 3.40771 3.44275 3.73631 3.79829 4.02298 4.12961 4.17868 4.46303 4.77342 4.83123 4.91981 5.18696 5.26917 5.29609 5.33578 5.39463 5.44833 5.59144 5.77711 5.79614 5.94766 6.00994 6.05141 6.16778 6.26325 6.38352 6.40722 6.41319 6.46703 6.68170 6.69806 6.77219 6.85309 7.16267 7.27046 7.74091 7.79125 7.92900 8.18414 8.48880 8.96630 9.57881 11.07797 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.003684 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.277919 B = 7598.419788 C = 8593.018518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.098 3.902 3 H 0.040 0.960 4 C -0.016 4.016 5 C -0.524 4.524 6 H 0.072 0.928 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.666 5.666 14 C 0.141 3.859 15 H 0.107 0.893 16 C -0.174 4.174 17 C 0.332 3.668 18 N -0.460 5.460 19 C 0.059 3.941 20 C -0.063 4.063 21 C -0.127 4.127 22 C -0.107 4.107 23 C -0.107 4.107 24 C 0.047 3.953 25 N -0.551 5.551 26 C 0.490 3.510 27 F -0.182 7.182 28 F -0.172 7.172 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.263 0.737 35 H 0.371 0.629 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.350 3.876 -20.365 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.011 4.011 3 H 0.058 0.942 4 C -0.054 4.054 5 C -0.562 4.562 6 H 0.090 0.910 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.707 3.293 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.302 5.302 14 C 0.028 3.972 15 H 0.125 0.875 16 C -0.233 4.233 17 C 0.066 3.934 18 N -0.177 5.177 19 C -0.058 4.058 20 C -0.083 4.083 21 C -0.147 4.147 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.059 4.059 25 N -0.254 5.254 26 C 0.355 3.645 27 F -0.163 7.163 28 F -0.153 7.153 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.195 0.805 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.345 3.239 -19.876 22.639 hybrid contribution -0.383 0.369 0.496 0.727 sum -10.727 3.608 -19.379 22.442 Atomic orbital electron populations 1.21874 0.96589 1.01514 0.99876 1.21442 0.93164 0.96254 0.90205 0.94202 1.19768 0.97173 0.96058 0.92406 1.21076 0.89728 1.35346 1.10041 0.90984 1.24984 0.94649 0.95627 0.97843 1.69913 1.06510 1.45110 1.32366 0.86778 0.80366 0.80703 0.81415 1.20237 1.21588 1.19075 1.60408 1.36420 1.30357 1.03027 1.20422 0.99409 0.91845 0.85512 0.87536 1.22469 0.97476 1.00951 1.02451 1.24043 0.87656 0.92471 0.89228 1.70551 1.25091 1.08796 1.13254 1.19207 0.97975 0.96492 0.92156 1.20092 0.99722 0.95210 0.93256 1.20660 0.98484 1.00099 0.95463 1.20862 0.98121 0.94044 0.99640 1.20044 1.01773 0.99819 0.91160 1.18745 1.02775 0.91636 0.92728 1.46660 1.38967 1.23171 1.16592 1.21494 0.79517 0.87906 0.75610 1.93091 1.57072 1.94153 1.71990 1.93046 1.89388 1.91678 1.41227 0.93055 0.94108 0.92652 0.95996 0.95896 0.92755 0.80510 0.90377 0.90842 0.93142 0.85011 0.85328 0.85311 0.85836 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.40 37.16 0.35 -2.03 16 2 C 0.10 1.92 2.40 -67.71 -0.16 1.75 16 3 H 0.04 0.77 7.11 -51.93 -0.37 0.40 16 4 C -0.02 -0.38 3.64 -27.88 -0.10 -0.48 16 5 C -0.52 -14.23 8.67 -34.44 -0.30 -14.53 16 6 H 0.07 2.06 7.73 -52.49 -0.41 1.66 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 9 Si 0.88 21.69 27.46 -169.99 -4.67 17.03 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.31 6.55 56.52 0.37 -5.94 16 13 N -0.67 -12.81 6.02 -100.95 -0.61 -13.42 16 14 C 0.14 2.25 2.68 -68.86 -0.18 2.07 16 15 H 0.11 1.55 4.16 -51.93 -0.22 1.34 16 16 C -0.17 -2.64 9.13 37.16 0.34 -2.30 16 17 C 0.33 5.36 6.62 -154.82 -1.03 4.33 16 18 N -0.46 -8.31 11.24 -8.23 -0.09 -8.40 16 19 C 0.06 0.93 7.23 -84.70 -0.61 0.32 16 20 C -0.06 -0.83 10.05 -39.61 -0.40 -1.22 16 21 C -0.13 -1.29 9.96 -39.97 -0.40 -1.68 16 22 C -0.11 -1.02 10.03 -39.52 -0.40 -1.42 16 23 C -0.11 -1.19 9.61 -39.50 -0.38 -1.57 16 24 C 0.05 0.65 6.69 -83.99 -0.56 0.09 16 25 N -0.55 -7.44 3.19 -116.88 -0.37 -7.81 16 26 C 0.49 4.83 6.44 59.85 0.39 5.21 16 27 F -0.18 -1.84 15.78 2.25 0.04 -1.81 16 28 F -0.17 -1.95 14.37 2.25 0.03 -1.92 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.63 7.43 -51.93 -0.39 0.24 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.02 0.53 7.56 -51.93 -0.39 0.13 16 33 H 0.02 0.54 7.21 -51.93 -0.37 0.16 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 35 H 0.37 8.11 6.95 -39.29 -0.27 7.84 16 36 H 0.08 1.24 7.43 -51.93 -0.39 0.86 16 37 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 1.13 7.13 -52.49 -0.37 0.76 16 43 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -32.25 356.71 -8.79 -41.04 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.72 Total: 5.92 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -3.54 Total: -9.56 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.30 Total: -56.09 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.07 Total: -3.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.25 -8.79 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348454131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.458 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds