Wall clock time and date at job start Tue Mar 31 2020 14:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46897 * 110.99939 * 85.00277 * 13 2 1 15 15 H 1.08991 * 109.47431 * 325.00008 * 14 13 2 16 16 C 1.53004 * 109.47063 * 85.00354 * 14 13 2 17 17 C 1.50705 * 109.47204 * 204.99765 * 14 13 2 18 18 N 1.30112 * 124.94656 * 314.70087 * 17 14 13 19 19 C 1.35786 * 109.63645 * 179.88738 * 18 17 14 20 20 C 1.39743 * 133.59669 * 180.12788 * 19 18 17 21 21 C 1.36607 * 119.88557 * 180.30040 * 20 19 18 22 22 C 1.38777 * 120.66900 * 359.95744 * 21 20 19 23 23 C 1.37856 * 120.45232 * 0.02562 * 22 21 20 24 24 C 1.38839 * 119.68546 * 359.97438 * 23 22 21 25 25 N 1.36036 * 124.94921 * 134.99841 * 17 14 13 26 26 C 1.46501 * 126.34886 * 359.97438 * 25 17 14 27 27 F 1.39899 * 109.46813 * 210.00064 * 26 25 17 28 28 F 1.39897 * 109.46967 * 329.99404 * 26 25 17 29 29 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 30 30 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 31 31 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 33 33 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 34 34 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 35 35 H 1.00903 * 111.00114 * 208.95700 * 13 2 1 36 36 H 1.09002 * 109.46969 * 299.99975 * 16 14 13 37 37 H 1.08999 * 109.47497 * 59.99287 * 16 14 13 38 38 H 1.08995 * 109.47165 * 180.02562 * 16 14 13 39 39 H 1.07998 * 120.06050 * 0.28232 * 20 19 18 40 40 H 1.07997 * 119.66841 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.77890 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.15864 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.46716 * 89.99793 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 5.5419 -1.1100 2.4076 9 14 3.3018 -2.1131 3.6927 10 1 3.1647 -3.5418 3.3115 11 1 4.0487 -2.0116 4.9722 12 1 1.9534 -1.5133 3.8578 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2224 -2.3469 15 1 1.2577 0.9328 -2.2908 16 6 3.4112 0.9806 -2.3224 17 6 1.9786 -0.5678 -3.6259 18 7 2.6293 -1.6659 -3.8785 19 6 2.3012 -2.1162 -5.1167 20 6 2.6913 -3.2241 -5.8739 21 6 2.1759 -3.4088 -7.1254 22 6 1.2650 -2.5063 -7.6562 23 6 0.8655 -1.4065 -6.9273 24 6 1.3788 -1.2024 -5.6534 25 7 1.1952 -0.2340 -4.6868 26 6 0.3191 0.9360 -4.7851 27 9 -0.7703 0.6348 -5.6095 28 9 -0.1424 1.2814 -3.5104 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7515 -1.7715 1.2057 33 1 1.6053 -0.2617 2.1370 34 1 6.0266 -1.5199 3.1411 35 1 2.9172 -1.1207 -1.0287 36 1 3.4864 1.5522 -1.3974 37 1 4.2360 0.2702 -2.3785 38 1 3.4576 1.6599 -3.1736 39 1 3.3992 -3.9329 -5.4704 40 1 2.4801 -4.2660 -7.7077 41 1 0.8664 -2.6665 -8.6470 42 1 0.1567 -0.7069 -7.3451 43 1 0.8755 1.7719 -5.2090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348454131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:44 Heat of formation + Delta-G solvation = -39.065429 kcal Electronic energy + Delta-G solvation = -27973.766883 eV Core-core repulsion = 23882.757770 eV Total energy + Delta-G solvation = -4091.009113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.48245 -48.61042 -43.20803 -39.11651 -38.07529 -35.20807 -34.83792 -33.76370 -31.38222 -30.20690 -29.76298 -28.99229 -27.17317 -25.50307 -24.47642 -23.23939 -22.60773 -21.49475 -21.08973 -19.30122 -19.17315 -18.91749 -18.71485 -17.79027 -17.01320 -16.60774 -16.37193 -16.22627 -16.04860 -15.66352 -15.38213 -15.14761 -14.96521 -14.73863 -14.64486 -14.58615 -14.12328 -13.84157 -13.69581 -13.59185 -13.47005 -13.04988 -12.93902 -12.66474 -12.63882 -12.58310 -12.35207 -12.20843 -11.93149 -11.76112 -11.72297 -11.33113 -11.23725 -10.98298 -10.73205 -9.45856 -9.30628 -9.16156 -8.25217 -6.27311 -0.10719 0.43543 0.92105 1.37543 1.38554 1.49432 1.65128 2.38509 2.42334 2.85443 2.89474 3.00228 3.08439 3.14575 3.47931 3.53340 3.93293 3.98340 4.05634 4.16529 4.25520 4.38757 4.41940 4.48146 4.49824 4.60033 4.65176 4.78112 4.80500 4.99179 5.08058 5.10981 5.14495 5.22173 5.32522 5.40212 5.48423 5.50842 5.54298 5.69588 5.75287 5.93144 6.23954 6.32496 6.49208 6.78725 6.83258 7.36812 8.90604 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.003684 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.277919 B = 7598.419788 C = 8593.018518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.102 3.898 3 H 0.039 0.961 4 C -0.013 4.013 5 C -0.520 4.520 6 H 0.042 0.958 7 C 0.010 3.990 8 N -0.948 5.948 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.676 5.676 14 C 0.146 3.854 15 H 0.126 0.874 16 C -0.165 4.165 17 C 0.317 3.683 18 N -0.506 5.506 19 C 0.015 3.985 20 C -0.088 4.088 21 C -0.116 4.116 22 C -0.094 4.094 23 C -0.111 4.111 24 C 0.038 3.962 25 N -0.549 5.549 26 C 0.484 3.516 27 F -0.182 7.182 28 F -0.182 7.182 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.015 0.985 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.350 0.650 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.147 0.853 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.068 4.327 -22.526 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.007 4.007 3 H 0.057 0.943 4 C -0.050 4.050 5 C -0.558 4.558 6 H 0.061 0.939 7 C -0.187 4.187 8 N -0.589 5.589 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.170 1.170 13 N -0.309 5.309 14 C 0.034 3.966 15 H 0.143 0.857 16 C -0.225 4.225 17 C 0.050 3.950 18 N -0.224 5.224 19 C -0.101 4.101 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.068 4.068 25 N -0.252 5.252 26 C 0.350 3.650 27 F -0.164 7.164 28 F -0.163 7.163 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.171 0.829 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.179 0.821 41 H 0.187 0.813 42 H 0.165 0.835 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -13.113 3.721 -22.059 25.931 hybrid contribution 0.485 0.191 0.969 1.101 sum -12.628 3.912 -21.090 24.891 Atomic orbital electron populations 1.21780 0.94012 1.01570 1.01524 1.21375 0.95041 0.95499 0.88823 0.94255 1.19710 0.94437 0.96190 0.94706 1.21368 0.91883 1.33813 1.08697 0.93947 1.25866 0.95407 0.96892 1.00566 1.70058 1.08306 1.46967 1.33548 0.85762 0.79841 0.79260 0.78347 1.20123 1.21275 1.17007 1.60440 1.35057 1.31496 1.03907 1.20444 1.00093 0.91537 0.84510 0.85710 1.22349 0.96325 1.00584 1.03195 1.23746 0.88841 0.92578 0.89821 1.70421 1.26638 1.10210 1.15132 1.19641 0.99967 0.98400 0.92139 1.20338 1.00759 0.95017 0.94641 1.21076 0.97363 1.00911 0.94198 1.21399 0.96519 0.92546 1.00824 1.20432 1.01916 1.00804 0.90023 1.19078 1.02675 0.91325 0.93713 1.46771 1.38798 1.23965 1.15640 1.22315 0.79475 0.87829 0.75351 1.93085 1.57236 1.94197 1.71840 1.93009 1.89508 1.91565 1.42265 0.91463 0.92397 0.93355 0.96669 0.95293 0.92764 0.82915 0.91552 0.93716 0.89891 0.85491 0.82085 0.81258 0.83550 0.78159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.40 71.98 0.68 -3.52 16 2 C 0.10 3.95 2.40 44.91 0.11 4.06 16 3 H 0.04 1.52 7.11 -2.39 -0.02 1.51 16 4 C -0.01 -0.60 3.64 29.85 0.11 -0.49 16 5 C -0.52 -29.14 8.67 25.60 0.22 -28.92 16 6 H 0.04 2.57 7.73 -2.91 -0.02 2.55 16 7 C 0.01 0.57 5.47 84.65 0.46 1.03 16 8 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 9 Si 0.94 45.13 27.46 68.60 1.88 47.01 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.25 -10.92 6.55 99.48 0.65 -10.27 16 13 N -0.68 -26.75 6.02 -473.30 -2.85 -29.60 16 14 C 0.15 4.72 2.68 44.17 0.12 4.84 16 15 H 0.13 3.50 4.16 -2.39 -0.01 3.49 16 16 C -0.16 -5.18 9.13 71.98 0.66 -4.52 16 17 C 0.32 10.36 6.62 137.92 0.91 11.27 16 18 N -0.51 -19.17 11.24 -179.96 -2.02 -21.19 16 19 C 0.01 0.48 7.23 39.45 0.29 0.76 16 20 C -0.09 -2.30 10.05 22.25 0.22 -2.08 16 21 C -0.12 -2.06 9.96 22.02 0.22 -1.84 16 22 C -0.09 -1.44 10.03 22.31 0.22 -1.21 16 23 C -0.11 -2.13 9.61 22.32 0.21 -1.92 16 24 C 0.04 1.01 6.69 38.86 0.26 1.27 16 25 N -0.55 -14.21 3.19 -523.69 -1.67 -15.88 16 26 C 0.48 8.28 6.44 127.77 0.82 9.10 16 27 F -0.18 -3.17 15.78 44.97 0.71 -2.46 16 28 F -0.18 -3.71 14.37 44.97 0.65 -3.06 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.65 7.43 -2.38 -0.02 1.63 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.01 0.72 7.56 -2.39 -0.02 0.71 16 33 H 0.03 1.32 7.21 -2.38 -0.02 1.30 16 34 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.35 16.30 6.95 -89.69 -0.62 15.68 16 36 H 0.07 2.20 7.43 -2.39 -0.02 2.19 16 37 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.13 3.24 8.06 -2.91 -0.02 3.21 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 42 H 0.15 2.10 7.13 -2.91 -0.02 2.08 16 43 H 0.20 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -74.16 356.71 2.87 -71.28 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.36 Total: 25.17 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 5.52 Total: -12.17 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -6.24 Total: -125.77 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 1.36 Total: -5.53 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -74.16 2.87 -71.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348454131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.219 kcal (2) G-P(sol) polarization free energy of solvation -74.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds