Wall clock time and date at job start Tue Mar 31 2020 14:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47331 * 2 1 4 4 N 1.46903 * 109.47088 * 119.99833 * 2 1 3 5 5 C 1.46902 * 111.00137 * 206.34665 * 4 2 1 6 6 H 1.08995 * 109.47158 * 324.03256 * 5 4 2 7 7 C 1.52996 * 109.46998 * 84.03909 * 5 4 2 8 8 C 1.53004 * 109.46982 * 204.03718 * 5 4 2 9 9 C 1.50700 * 109.47298 * 64.99993 * 8 5 4 10 10 H 1.08003 * 119.99532 * 359.97438 * 9 8 5 11 11 C 1.37874 * 120.00155 * 180.27591 * 9 8 5 12 12 N 1.31515 * 119.99633 * 359.72126 * 11 9 8 13 13 Si 1.86800 * 120.00056 * 179.72390 * 11 9 8 14 14 H 1.48500 * 109.47047 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46959 * 119.99981 * 13 11 9 16 16 H 1.48497 * 109.47145 * 239.99697 * 13 11 9 17 17 C 1.50700 * 109.47226 * 239.99332 * 2 1 3 18 18 N 1.30102 * 124.95548 * 285.02782 * 17 2 1 19 19 C 1.35783 * 109.64492 * 179.97438 * 18 17 2 20 20 C 1.39746 * 133.60265 * 180.02562 * 19 18 17 21 21 C 1.36597 * 119.88486 * 180.02562 * 20 19 18 22 22 C 1.38777 * 120.67592 * 359.95864 * 21 20 19 23 23 C 1.37859 * 120.44473 * 0.02562 * 22 21 20 24 24 C 1.38830 * 119.69142 * 359.97438 * 23 22 21 25 25 N 1.36037 * 124.94244 * 104.72210 * 17 2 1 26 26 C 1.46499 * 126.35431 * 0.02562 * 25 17 2 27 27 F 1.39898 * 109.46977 * 209.99832 * 26 25 17 28 28 F 1.39897 * 109.46769 * 329.99828 * 26 25 17 29 29 H 1.09003 * 109.47087 * 295.26577 * 1 2 3 30 30 H 1.08998 * 109.47253 * 55.26042 * 1 2 3 31 31 H 1.09003 * 109.47559 * 175.26308 * 1 2 3 32 32 H 1.00901 * 111.00319 * 330.30317 * 4 2 1 33 33 H 1.09001 * 109.46885 * 304.76565 * 7 5 4 34 34 H 1.09000 * 109.47680 * 64.76927 * 7 5 4 35 35 H 1.09004 * 109.47001 * 184.76946 * 7 5 4 36 36 H 1.08997 * 109.47155 * 304.99952 * 8 5 4 37 37 H 1.08998 * 109.46887 * 185.00007 * 8 5 4 38 38 H 0.97006 * 119.99305 * 180.02562 * 12 11 9 39 39 H 1.08004 * 120.05826 * 359.95280 * 20 19 18 40 40 H 1.08001 * 119.66706 * 179.97438 * 21 20 19 41 41 H 1.07993 * 119.77728 * 180.02562 * 22 21 20 42 42 H 1.07995 * 120.15322 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.46826 * 90.00036 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3538 -0.2087 1.5789 6 1 3.9293 0.0123 0.6800 7 6 3.2154 1.0611 2.4210 8 6 4.0739 -1.2851 2.3937 9 6 4.3195 -2.4921 1.5255 10 1 3.9941 -2.4917 0.4956 11 6 4.9540 -3.5993 2.0476 12 7 5.3498 -3.5999 3.3017 13 14 5.2515 -5.0984 0.9735 14 1 4.7156 -4.8459 -0.3882 15 1 6.7099 -5.3655 0.8894 16 1 4.5661 -6.2753 1.5654 17 6 2.0323 -0.7105 -1.2304 18 7 2.0201 -1.9999 -1.4037 19 6 2.5438 -2.3020 -2.6195 20 6 2.7657 -3.5009 -3.3024 21 6 3.3260 -3.4810 -4.5480 22 6 3.6783 -2.2797 -5.1468 23 6 3.4683 -1.0848 -4.4921 24 6 2.9000 -1.0854 -3.2254 25 7 2.5592 -0.0967 -2.3241 26 6 2.7356 1.3457 -2.5097 27 9 2.6385 1.6561 -3.8703 28 9 1.7421 2.0317 -1.8028 29 1 -0.3633 0.4386 0.9294 30 1 -0.3634 0.5856 -0.8445 31 1 -0.3634 -1.0242 -0.0849 32 1 1.3687 -0.5952 1.9643 33 1 2.6289 1.7984 1.8729 34 1 2.7139 0.8223 3.3589 35 1 4.2048 1.4673 2.6313 36 1 3.4564 -1.5699 3.2455 37 1 5.0268 -0.8941 2.7503 38 1 5.7965 -4.3787 3.6689 39 1 2.4958 -4.4416 -2.8456 40 1 3.4963 -4.4097 -5.0724 41 1 4.1199 -2.2809 -6.1323 42 1 3.7447 -0.1527 -4.9623 43 1 3.7165 1.6426 -2.1384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348454132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:48 Heat of formation + Delta-G solvation = -14.894533 kcal Electronic energy + Delta-G solvation = -28673.583873 eV Core-core repulsion = 24583.622888 eV Total energy + Delta-G solvation = -4089.960985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.59904 -47.71997 -41.98308 -37.81340 -36.70560 -33.71652 -33.36154 -31.85079 -30.30228 -28.88518 -27.78735 -27.21393 -26.14640 -24.14951 -22.97186 -22.07392 -21.51521 -20.16105 -19.74631 -18.43461 -18.20376 -17.67288 -16.77616 -16.13968 -15.54435 -15.37425 -15.03355 -14.91484 -14.49979 -14.45252 -14.15623 -14.01337 -13.94560 -13.68631 -13.53424 -12.89095 -12.65902 -12.59473 -12.27602 -12.02559 -11.93677 -11.71610 -11.53582 -11.42554 -11.29423 -11.22557 -10.87119 -10.56492 -10.45821 -10.28601 -10.07029 -9.60501 -9.25721 -8.87147 -8.30936 -8.16407 -7.96039 -7.69899 -5.78566 -3.74056 1.06607 1.55530 1.95704 2.91028 3.27345 3.45894 3.53000 3.63099 3.85835 4.02343 4.18347 4.26877 4.31826 4.67472 4.69799 5.01525 5.05261 5.20401 5.21904 5.47198 5.50330 5.55942 5.59505 5.67389 5.75428 5.76353 5.80583 5.88512 5.95080 6.15718 6.22190 6.33170 6.46859 6.55556 6.60522 6.63846 6.89075 6.98576 7.05958 7.47934 7.69354 7.96333 8.05287 8.18924 8.24074 8.69102 9.34081 9.87787 11.33888 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.006285 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.920205 B = 4453.971474 C = 6416.055619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.156 3.844 3 H 0.063 0.937 4 N -0.643 5.643 5 C 0.090 3.910 6 H 0.055 0.945 7 C -0.182 4.182 8 C 0.035 3.965 9 C -0.479 4.479 10 H 0.066 0.934 11 C 0.049 3.951 12 N -0.908 5.908 13 Si 0.884 3.116 14 H -0.270 1.270 15 H -0.291 1.291 16 H -0.287 1.287 17 C 0.319 3.681 18 N -0.429 5.429 19 C 0.059 3.941 20 C -0.059 4.059 21 C -0.130 4.130 22 C -0.106 4.106 23 C -0.110 4.110 24 C 0.049 3.951 25 N -0.553 5.553 26 C 0.490 3.510 27 F -0.183 7.183 28 F -0.179 7.179 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.345 0.655 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.016 0.984 38 H 0.254 0.746 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 11.223 -14.076 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.043 3.957 3 H 0.080 0.920 4 N -0.276 5.276 5 C -0.019 4.019 6 H 0.074 0.926 7 C -0.241 4.241 8 C -0.003 4.003 9 C -0.518 4.518 10 H 0.084 0.916 11 C -0.149 4.149 12 N -0.550 5.550 13 Si 0.713 3.287 14 H -0.194 1.194 15 H -0.218 1.218 16 H -0.214 1.214 17 C 0.053 3.947 18 N -0.145 5.145 19 C -0.058 4.058 20 C -0.078 4.078 21 C -0.150 4.150 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.057 4.057 25 N -0.257 5.257 26 C 0.354 3.646 27 F -0.164 7.164 28 F -0.160 7.160 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.165 0.835 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.835 10.090 -13.771 18.389 hybrid contribution 0.359 0.677 -0.740 1.065 sum -6.475 10.768 -14.510 19.194 Atomic orbital electron populations 1.21912 0.92664 1.03730 1.02103 1.20021 0.95126 0.93478 0.87096 0.91983 1.60150 1.04045 1.58451 1.04935 1.21862 0.89016 0.93472 0.97525 0.92650 1.22595 1.01631 0.99027 1.00863 1.19102 0.94058 0.92288 0.94813 1.21272 1.34101 0.98440 0.98000 0.91581 1.24959 0.96581 0.98523 0.94847 1.69982 1.41963 1.29716 1.13351 0.86630 0.77097 0.83545 0.81442 1.19437 1.21790 1.21373 1.23879 0.94235 0.88136 0.88470 1.70595 1.19348 1.10481 1.14043 1.19232 1.01771 0.92727 0.92072 1.20108 0.97937 0.96004 0.93737 1.20630 1.00853 0.98197 0.95310 1.20827 1.00534 0.91471 0.99744 1.19995 1.02256 0.99110 0.91679 1.18714 1.04962 0.88373 0.93623 1.46637 1.56452 1.05084 1.17504 1.21443 0.91460 0.77148 0.74551 1.93081 1.97116 1.92278 1.33946 1.93079 1.65802 1.79027 1.78107 0.91346 0.92338 0.90547 0.83459 0.94400 0.92523 0.92421 0.96331 0.96586 0.93623 0.85156 0.85460 0.85426 0.85988 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.20 37.15 0.34 -1.51 16 2 C 0.16 2.38 2.21 -68.87 -0.15 2.23 16 3 H 0.06 0.85 4.97 -51.93 -0.26 0.60 16 4 N -0.64 -11.69 5.73 -100.96 -0.58 -12.26 16 5 C 0.09 1.77 2.34 -67.71 -0.16 1.61 16 6 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 7 C -0.18 -2.83 9.16 37.16 0.34 -2.49 16 8 C 0.03 0.88 4.65 -27.88 -0.13 0.75 16 9 C -0.48 -13.80 8.84 -34.44 -0.30 -14.10 16 10 H 0.07 1.95 7.74 -52.48 -0.41 1.54 16 11 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 12 N -0.91 -28.11 13.29 55.43 0.74 -27.37 16 13 Si 0.88 23.22 29.54 -169.99 -5.02 18.20 16 14 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 16 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 17 C 0.32 5.61 6.35 -154.83 -0.98 4.62 16 18 N -0.43 -8.82 11.24 -8.23 -0.09 -8.91 16 19 C 0.06 1.12 7.23 -84.70 -0.61 0.50 16 20 C -0.06 -0.97 10.05 -39.61 -0.40 -1.37 16 21 C -0.13 -1.72 9.96 -39.97 -0.40 -2.11 16 22 C -0.11 -1.29 10.03 -39.52 -0.40 -1.69 16 23 C -0.11 -1.48 9.61 -39.50 -0.38 -1.86 16 24 C 0.05 0.80 6.69 -83.99 -0.56 0.24 16 25 N -0.55 -8.50 3.19 -116.88 -0.37 -8.87 16 26 C 0.49 5.54 6.34 59.85 0.38 5.92 16 27 F -0.18 -2.04 15.80 2.25 0.04 -2.01 16 28 F -0.18 -2.01 14.73 2.25 0.03 -1.97 16 29 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.34 5.64 8.03 -39.29 -0.32 5.33 16 33 H 0.04 0.49 7.32 -51.93 -0.38 0.11 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.38 7.14 -52.49 -0.37 1.00 16 43 H 0.15 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -34.57 363.36 -9.21 -43.78 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.91 Total: 1.85 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.51 Total: -7.89 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.31 Total: -57.42 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.07 Total: -3.98 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.57 -9.21 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348454132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.884 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds