Wall clock time and date at job start Tue Mar 31 2020 14:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47331 * 2 1 4 4 N 1.46903 * 109.47088 * 119.99833 * 2 1 3 5 5 C 1.46902 * 111.00137 * 206.34665 * 4 2 1 6 6 H 1.08995 * 109.47158 * 324.03256 * 5 4 2 7 7 C 1.52996 * 109.46998 * 84.03909 * 5 4 2 8 8 C 1.53004 * 109.46982 * 204.03718 * 5 4 2 9 9 C 1.50700 * 109.47298 * 64.99993 * 8 5 4 10 10 H 1.08003 * 119.99532 * 359.97438 * 9 8 5 11 11 C 1.37874 * 120.00155 * 180.27591 * 9 8 5 12 12 N 1.31515 * 119.99633 * 359.72126 * 11 9 8 13 13 Si 1.86800 * 120.00056 * 179.72390 * 11 9 8 14 14 H 1.48500 * 109.47047 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46959 * 119.99981 * 13 11 9 16 16 H 1.48497 * 109.47145 * 239.99697 * 13 11 9 17 17 C 1.50700 * 109.47226 * 239.99332 * 2 1 3 18 18 N 1.30102 * 124.95548 * 285.02782 * 17 2 1 19 19 C 1.35783 * 109.64492 * 179.97438 * 18 17 2 20 20 C 1.39746 * 133.60265 * 180.02562 * 19 18 17 21 21 C 1.36597 * 119.88486 * 180.02562 * 20 19 18 22 22 C 1.38777 * 120.67592 * 359.95864 * 21 20 19 23 23 C 1.37859 * 120.44473 * 0.02562 * 22 21 20 24 24 C 1.38830 * 119.69142 * 359.97438 * 23 22 21 25 25 N 1.36037 * 124.94244 * 104.72210 * 17 2 1 26 26 C 1.46499 * 126.35431 * 0.02562 * 25 17 2 27 27 F 1.39898 * 109.46977 * 209.99832 * 26 25 17 28 28 F 1.39897 * 109.46769 * 329.99828 * 26 25 17 29 29 H 1.09003 * 109.47087 * 295.26577 * 1 2 3 30 30 H 1.08998 * 109.47253 * 55.26042 * 1 2 3 31 31 H 1.09003 * 109.47559 * 175.26308 * 1 2 3 32 32 H 1.00901 * 111.00319 * 330.30317 * 4 2 1 33 33 H 1.09001 * 109.46885 * 304.76565 * 7 5 4 34 34 H 1.09000 * 109.47680 * 64.76927 * 7 5 4 35 35 H 1.09004 * 109.47001 * 184.76946 * 7 5 4 36 36 H 1.08997 * 109.47155 * 304.99952 * 8 5 4 37 37 H 1.08998 * 109.46887 * 185.00007 * 8 5 4 38 38 H 0.97006 * 119.99305 * 180.02562 * 12 11 9 39 39 H 1.08004 * 120.05826 * 359.95280 * 20 19 18 40 40 H 1.08001 * 119.66706 * 179.97438 * 21 20 19 41 41 H 1.07993 * 119.77728 * 180.02562 * 22 21 20 42 42 H 1.07995 * 120.15322 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.46826 * 90.00036 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3538 -0.2087 1.5789 6 1 3.9293 0.0123 0.6800 7 6 3.2154 1.0611 2.4210 8 6 4.0739 -1.2851 2.3937 9 6 4.3195 -2.4921 1.5255 10 1 3.9941 -2.4917 0.4956 11 6 4.9540 -3.5993 2.0476 12 7 5.3498 -3.5999 3.3017 13 14 5.2515 -5.0984 0.9735 14 1 4.7156 -4.8459 -0.3882 15 1 6.7099 -5.3655 0.8894 16 1 4.5661 -6.2753 1.5654 17 6 2.0323 -0.7105 -1.2304 18 7 2.0201 -1.9999 -1.4037 19 6 2.5438 -2.3020 -2.6195 20 6 2.7657 -3.5009 -3.3024 21 6 3.3260 -3.4810 -4.5480 22 6 3.6783 -2.2797 -5.1468 23 6 3.4683 -1.0848 -4.4921 24 6 2.9000 -1.0854 -3.2254 25 7 2.5592 -0.0967 -2.3241 26 6 2.7356 1.3457 -2.5097 27 9 2.6385 1.6561 -3.8703 28 9 1.7421 2.0317 -1.8028 29 1 -0.3633 0.4386 0.9294 30 1 -0.3634 0.5856 -0.8445 31 1 -0.3634 -1.0242 -0.0849 32 1 1.3687 -0.5952 1.9643 33 1 2.6289 1.7984 1.8729 34 1 2.7139 0.8223 3.3589 35 1 4.2048 1.4673 2.6313 36 1 3.4564 -1.5699 3.2455 37 1 5.0268 -0.8941 2.7503 38 1 5.7965 -4.3787 3.6689 39 1 2.4958 -4.4416 -2.8456 40 1 3.4963 -4.4097 -5.0724 41 1 4.1199 -2.2809 -6.1323 42 1 3.7447 -0.1527 -4.9623 43 1 3.7165 1.6426 -2.1384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348454132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:47 Heat of formation + Delta-G solvation = -37.093498 kcal Electronic energy + Delta-G solvation = -28674.546492 eV Core-core repulsion = 24583.622888 eV Total energy + Delta-G solvation = -4090.923604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.46274 -48.58007 -43.14770 -39.06970 -37.97160 -35.23302 -34.81147 -33.64528 -31.38307 -30.13400 -29.36665 -28.76989 -27.11265 -25.33249 -24.96083 -23.19142 -22.63697 -21.46706 -21.23826 -19.35271 -19.16512 -18.70532 -18.35497 -17.79433 -16.78788 -16.56779 -16.49935 -16.14608 -16.04587 -15.56266 -15.33941 -15.23450 -14.99586 -14.70696 -14.58949 -14.42031 -14.01773 -13.89627 -13.58464 -13.41714 -13.21561 -13.13738 -12.93817 -12.76034 -12.59265 -12.44380 -12.40847 -12.34134 -12.23633 -11.86810 -11.63192 -11.16105 -11.06534 -10.84444 -10.47494 -9.42110 -9.14923 -9.07637 -8.08956 -6.09331 -0.06737 0.44881 0.94618 1.32924 1.35661 1.51020 1.73980 2.42394 2.47122 2.86930 2.91490 3.09163 3.13702 3.25568 3.42243 3.50812 3.95580 4.02792 4.07749 4.14919 4.24931 4.39874 4.42387 4.46078 4.50957 4.56289 4.72497 4.76304 4.85900 4.97231 5.08528 5.18728 5.27075 5.29499 5.37581 5.50495 5.53014 5.53988 5.68936 5.83261 5.93660 5.94653 6.29156 6.47758 6.71769 6.96353 7.06171 7.55635 9.03468 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.006285 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.920205 B = 4453.971474 C = 6416.055619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.160 3.840 3 H 0.085 0.915 4 N -0.667 5.667 5 C 0.105 3.895 6 H 0.045 0.955 7 C -0.170 4.170 8 C 0.039 3.961 9 C -0.482 4.482 10 H 0.055 0.945 11 C -0.003 4.003 12 N -0.940 5.940 13 Si 0.942 3.058 14 H -0.275 1.275 15 H -0.281 1.281 16 H -0.284 1.284 17 C 0.308 3.692 18 N -0.485 5.485 19 C 0.013 3.987 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.096 4.096 23 C -0.111 4.111 24 C 0.037 3.963 25 N -0.554 5.554 26 C 0.487 3.513 27 F -0.181 7.181 28 F -0.177 7.177 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.353 0.647 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.058 0.942 36 H -0.006 1.006 37 H -0.007 1.007 38 H 0.256 0.744 39 H 0.117 0.883 40 H 0.159 0.841 41 H 0.171 0.829 42 H 0.148 0.852 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 13.025 -16.332 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.048 3.952 3 H 0.103 0.897 4 N -0.301 5.301 5 C -0.005 4.005 6 H 0.064 0.936 7 C -0.229 4.229 8 C 0.002 3.998 9 C -0.520 4.520 10 H 0.073 0.927 11 C -0.199 4.199 12 N -0.584 5.584 13 Si 0.769 3.231 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.210 1.210 17 C 0.042 3.958 18 N -0.202 5.202 19 C -0.103 4.103 20 C -0.114 4.114 21 C -0.139 4.139 22 C -0.115 4.115 23 C -0.131 4.131 24 C -0.069 4.069 25 N -0.258 5.258 26 C 0.353 3.647 27 F -0.162 7.162 28 F -0.159 7.159 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.175 0.825 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.176 0.824 41 H 0.189 0.811 42 H 0.166 0.834 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.706 11.921 -16.040 21.080 hybrid contribution 0.303 0.092 -0.133 0.343 sum -6.403 12.013 -16.173 21.140 Atomic orbital electron populations 1.21867 0.90844 1.02872 1.04012 1.20172 0.96487 0.93702 0.84877 0.89732 1.59874 1.03717 1.60183 1.06310 1.21454 0.89225 0.93172 0.96637 0.93634 1.22432 1.02449 0.97476 1.00526 1.18978 0.93302 0.93203 0.94328 1.21558 1.33002 0.99657 0.97832 0.92694 1.25680 0.96912 1.01265 0.95998 1.70081 1.43074 1.30539 1.14664 0.85729 0.77298 0.80540 0.79518 1.19991 1.20726 1.20984 1.24179 0.94192 0.87929 0.89544 1.70466 1.21341 1.12621 1.15777 1.19673 1.03568 0.94628 0.92457 1.20316 1.00328 0.95195 0.95552 1.21037 0.98744 1.00276 0.93871 1.21365 0.98790 0.90323 1.01029 1.20423 1.01308 1.00871 0.90544 1.19042 1.05362 0.87830 0.94637 1.46816 1.55694 1.06576 1.16679 1.21980 0.92754 0.75199 0.74781 1.93082 1.97168 1.91989 1.33962 1.93074 1.66090 1.78652 1.78053 0.88760 0.91057 0.92720 0.82519 0.90926 0.92365 0.92291 0.98720 0.98880 0.93521 0.86511 0.82374 0.81121 0.83405 0.79851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.20 71.98 0.66 -2.66 16 2 C 0.16 4.72 2.21 44.17 0.10 4.82 16 3 H 0.09 2.10 4.97 -2.39 -0.01 2.09 16 4 N -0.67 -24.15 5.73 -473.32 -2.71 -26.87 16 5 C 0.10 4.06 2.34 44.92 0.11 4.17 16 6 H 0.05 1.85 7.69 -2.39 -0.02 1.83 16 7 C -0.17 -4.95 9.16 71.98 0.66 -4.29 16 8 C 0.04 2.06 4.65 29.85 0.14 2.20 16 9 C -0.48 -28.58 8.84 25.60 0.23 -28.35 16 10 H 0.05 3.36 7.74 -2.91 -0.02 3.34 16 11 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 12 N -0.94 -59.60 13.29 21.45 0.28 -59.31 16 13 Si 0.94 49.09 29.54 68.60 2.03 51.11 16 14 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 15 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 16 H -0.28 -14.51 7.11 99.48 0.71 -13.81 16 17 C 0.31 10.86 6.35 137.92 0.88 11.73 16 18 N -0.48 -20.74 11.24 -179.97 -2.02 -22.77 16 19 C 0.01 0.51 7.23 39.45 0.29 0.80 16 20 C -0.09 -3.23 10.05 22.25 0.22 -3.00 16 21 C -0.12 -2.96 9.96 22.01 0.22 -2.74 16 22 C -0.10 -2.03 10.03 22.31 0.22 -1.80 16 23 C -0.11 -2.72 9.61 22.32 0.21 -2.50 16 24 C 0.04 1.19 6.69 38.86 0.26 1.45 16 25 N -0.55 -16.47 3.19 -523.70 -1.67 -18.15 16 26 C 0.49 9.77 6.34 127.77 0.81 10.58 16 27 F -0.18 -3.52 15.80 44.97 0.71 -2.81 16 28 F -0.18 -3.48 14.73 44.97 0.66 -2.81 16 29 H 0.09 1.76 8.03 -2.39 -0.02 1.74 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.35 11.40 8.03 -89.69 -0.72 10.68 16 33 H 0.07 1.63 7.32 -2.39 -0.02 1.61 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 39 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 40 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.15 2.79 7.14 -2.91 -0.02 2.77 16 43 H 0.19 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -79.27 363.36 3.05 -76.22 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.31 Total: 14.73 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 5.46 Total: -9.34 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -6.12 Total: -127.10 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 1.37 Total: -5.62 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.03 Total: 51.11 kcal Total: -79.27 3.05 -76.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348454132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.123 kcal (2) G-P(sol) polarization free energy of solvation -79.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds