Wall clock time and date at job start Tue Mar 31 2020 14:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.46980 * 2 1 4 4 C 1.46493 * 119.99830 * 270.00257 * 3 2 1 5 5 C 1.50703 * 109.47042 * 269.99653 * 4 3 2 6 6 H 1.07997 * 119.99854 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99875 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00065 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99717 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47223 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47028 * 119.99709 * 9 7 5 12 12 H 1.48496 * 109.46945 * 239.99900 * 9 7 5 13 13 C 1.34775 * 119.99752 * 89.99992 * 3 2 1 14 14 O 1.21282 * 119.99992 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00169 * 0.27840 * 13 3 2 16 16 N 1.46500 * 109.46804 * 179.72301 * 15 13 3 17 17 N 1.28387 * 119.17232 * 269.72839 * 16 15 13 18 18 C 1.30400 * 122.45083 * 179.71365 * 17 16 15 19 19 C 1.50702 * 119.76596 * 180.31665 * 18 17 16 20 20 C 1.40471 * 120.46793 * 0.55822 * 18 17 16 21 21 C 1.50701 * 120.84324 * 179.75637 * 20 18 17 22 22 C 1.36600 * 118.31187 * 359.73531 * 20 18 17 23 23 C 1.50707 * 121.09651 * 180.02562 * 22 20 18 24 24 O 1.42905 * 109.47001 * 354.14734 * 23 22 20 25 25 C 1.34677 * 119.17181 * 89.99993 * 16 15 13 26 26 O 1.22060 * 120.34528 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46906 * 299.99753 * 1 2 3 28 28 H 1.08991 * 109.47335 * 60.00090 * 1 2 3 29 29 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47028 * 239.99970 * 2 1 3 31 31 H 1.08999 * 109.47154 * 119.99631 * 2 1 3 32 32 H 1.08996 * 109.47455 * 30.00176 * 4 3 2 33 33 H 1.09003 * 109.46935 * 150.00029 * 4 3 2 34 34 H 0.97001 * 120.00184 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46506 * 299.71940 * 15 13 3 36 36 H 1.08994 * 109.46896 * 59.72227 * 15 13 3 37 37 H 1.09001 * 109.47075 * 270.24038 * 19 18 17 38 38 H 1.08994 * 109.47504 * 30.23818 * 19 18 17 39 39 H 1.09000 * 109.47341 * 150.24674 * 19 18 17 40 40 H 1.09004 * 109.46922 * 242.79505 * 21 20 18 41 41 H 1.08998 * 109.47349 * 2.79744 * 21 20 18 42 42 H 1.09000 * 109.47138 * 122.79863 * 21 20 18 43 43 H 1.09001 * 109.47113 * 114.14110 * 23 22 20 44 44 H 1.08993 * 109.47369 * 234.14324 * 23 22 20 45 45 H 0.96699 * 113.99950 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3495 3.1274 -3.6171 9 14 5.9133 2.0966 -3.4171 10 1 6.6003 1.2397 -2.4177 11 1 5.9203 1.4184 -4.7381 12 1 6.6213 3.3975 -3.5247 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1673 15 6 1.9977 1.3040 2.4723 16 7 2.3201 2.1998 3.5858 17 7 3.5134 2.2051 4.0595 18 6 3.8715 2.9800 5.0452 19 6 5.2913 2.9418 5.5492 20 6 2.9421 3.8464 5.6440 21 6 3.3454 4.7416 6.7873 22 6 1.6635 3.8573 5.1634 23 6 0.6158 4.7625 5.7586 24 8 1.1535 5.4232 6.9060 25 6 1.3559 2.9932 4.0904 26 8 0.2280 2.9655 3.6246 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 3.6757 3.5185 -4.4426 35 1 0.9500 1.0098 2.5343 36 1 2.6282 0.4165 2.5257 37 1 5.3766 2.1952 6.3388 38 1 5.9610 2.6817 4.7295 39 1 5.5632 3.9207 5.9440 40 1 2.7768 4.4725 7.6775 41 1 4.4103 4.6201 6.9857 42 1 3.1407 5.7798 6.5255 43 1 0.3150 5.5051 5.0195 44 1 -0.2509 4.1709 6.0528 45 1 0.5325 6.0232 7.3413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363750435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:51 Heat of formation + Delta-G solvation = -47.243363 kcal Electronic energy + Delta-G solvation = -28380.695329 eV Core-core repulsion = 24400.419110 eV Total energy + Delta-G solvation = -3980.276220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10322 -39.10461 -37.84180 -37.67378 -35.55785 -35.16448 -32.85432 -32.36778 -30.96732 -30.11328 -28.60638 -27.71325 -26.68277 -25.79115 -23.09753 -22.90114 -22.17047 -21.86538 -19.05224 -18.71148 -17.32971 -16.94209 -16.83782 -16.41826 -15.89920 -15.80883 -15.27715 -14.86080 -14.62833 -14.45241 -14.04036 -13.88394 -13.70108 -13.45679 -13.42366 -13.12850 -12.84450 -12.74799 -12.61817 -12.24322 -12.20084 -12.01936 -11.85605 -11.58018 -11.46580 -11.21663 -10.91059 -10.86154 -10.74877 -10.63106 -10.56144 -10.14529 -9.67438 -9.62678 -9.58141 -8.99876 -8.44364 -8.17730 -7.72928 -6.04758 -4.09567 0.57945 1.71665 2.21506 3.26345 3.29603 3.36870 3.37595 3.42110 3.73468 3.90402 4.31005 4.44201 4.54191 4.63388 4.74847 4.91226 5.12535 5.16882 5.21072 5.28526 5.29894 5.34774 5.36211 5.38903 5.49544 5.61403 5.63899 5.69163 5.76462 5.78986 5.94855 6.01654 6.07020 6.12738 6.21981 6.36515 6.50060 7.01491 7.31337 7.42601 7.49708 7.71833 7.91239 8.21953 8.29276 8.32321 8.85230 9.00236 9.55306 11.03492 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003625 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.513908 B = 7722.273827 C = 8575.147849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.500 3.500 14 O -0.530 6.530 15 C 0.092 3.908 16 N -0.322 5.322 17 N -0.209 5.209 18 C 0.055 3.945 19 C -0.087 4.087 20 C -0.010 4.010 21 C -0.103 4.103 22 C -0.186 4.186 23 C 0.143 3.857 24 O -0.559 6.559 25 C 0.496 3.504 26 O -0.536 6.536 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 -2.380 22.275 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.284 3.716 14 O -0.406 6.406 15 C -0.032 4.032 16 N -0.140 5.140 17 N -0.032 5.032 18 C -0.116 4.116 19 C -0.145 4.145 20 C -0.016 4.016 21 C -0.159 4.159 22 C -0.198 4.198 23 C 0.065 3.935 24 O -0.366 6.366 25 C 0.295 3.705 26 O -0.415 6.415 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.500 -2.709 20.994 21.315 hybrid contribution -0.045 0.632 -0.120 0.645 sum -2.545 -2.077 20.874 21.131 Atomic orbital electron populations 1.22248 0.96479 1.01612 1.02706 1.21500 0.93786 0.83919 1.02909 1.48208 1.63459 1.13350 1.07313 1.19308 0.96440 0.93643 0.77735 1.21465 0.96825 1.31929 1.06288 0.92327 1.24941 0.97909 0.94891 0.96381 1.69944 1.35624 1.33386 1.14364 0.86432 0.84570 0.78061 0.78306 1.19750 1.20934 1.20893 1.20157 0.79272 0.87261 0.84940 1.90707 1.45414 1.17737 1.86755 1.21961 1.04795 0.92566 0.83886 1.46005 1.05453 1.34333 1.28241 1.70693 1.02679 1.20206 1.09650 1.21743 0.98503 0.96397 0.94992 1.20571 0.88886 1.03317 1.01761 1.20916 0.91814 0.93532 0.95354 1.20947 1.00506 0.99017 0.95412 1.20811 0.96489 1.02838 0.99687 1.20319 0.92365 0.93449 0.87357 1.86868 1.42689 1.62936 1.44078 1.17461 0.85881 0.82214 0.84958 1.90948 1.19929 1.68075 1.62594 0.92845 0.91830 0.91928 0.89431 0.91810 0.94718 0.93950 0.92758 0.85542 0.85876 0.90320 0.90048 0.89730 0.88984 0.91703 0.89194 0.91634 0.91730 0.77809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.24 37.16 0.38 -2.02 16 2 C 0.10 1.65 5.94 -4.04 -0.02 1.63 16 3 N -0.59 -12.88 2.46 -175.06 -0.43 -13.31 16 4 C 0.25 6.63 5.16 -5.20 -0.03 6.61 16 5 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.50 11.14 7.74 -10.98 -0.08 11.06 16 14 O -0.53 -14.42 16.01 5.56 0.09 -14.33 16 15 C 0.09 1.57 4.60 -5.19 -0.02 1.55 16 16 N -0.32 -5.77 2.71 -64.52 -0.17 -5.94 16 17 N -0.21 -3.45 10.80 33.72 0.36 -3.09 16 18 C 0.05 0.74 6.88 -82.36 -0.57 0.17 16 19 C -0.09 -0.80 9.64 36.01 0.35 -0.46 16 20 C -0.01 -0.13 5.91 -104.37 -0.62 -0.75 16 21 C -0.10 -0.92 8.02 36.01 0.29 -0.64 16 22 C -0.19 -2.78 5.93 -104.10 -0.62 -3.40 16 23 C 0.14 1.64 7.04 36.01 0.25 1.89 16 24 O -0.56 -4.57 8.60 -35.23 -0.30 -4.87 16 25 C 0.50 9.06 7.46 -15.20 -0.11 8.95 16 26 O -0.54 -10.91 16.17 4.86 0.08 -10.83 16 27 H 0.05 0.75 7.25 -51.93 -0.38 0.37 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 32 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.13 1.94 6.44 -51.93 -0.33 1.61 16 36 H 0.12 1.71 7.39 -51.93 -0.38 1.33 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.61 6.13 -51.93 -0.32 0.29 16 40 H 0.09 0.77 6.90 -51.93 -0.36 0.41 16 41 H 0.06 0.45 5.59 -51.93 -0.29 0.16 16 42 H 0.09 0.84 6.99 -51.93 -0.36 0.47 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.37 1.34 9.12 45.56 0.42 1.76 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -38.64 371.05 -5.94 -44.58 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.65 Total: 0.55 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -1.22 Total: 10.80 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.50 Total: -48.58 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.14 Total: -30.03 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.64 -5.94 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363750435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.664 kcal (2) G-P(sol) polarization free energy of solvation -38.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds