Wall clock time and date at job start Tue Mar 31 2020 14:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.46980 * 2 1 4 4 C 1.46493 * 119.99830 * 270.00257 * 3 2 1 5 5 C 1.50703 * 109.47042 * 269.99653 * 4 3 2 6 6 H 1.07997 * 119.99854 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99875 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00065 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99717 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47223 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47028 * 119.99709 * 9 7 5 12 12 H 1.48496 * 109.46945 * 239.99900 * 9 7 5 13 13 C 1.34775 * 119.99752 * 89.99992 * 3 2 1 14 14 O 1.21282 * 119.99992 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00169 * 0.27840 * 13 3 2 16 16 N 1.46500 * 109.46804 * 179.72301 * 15 13 3 17 17 N 1.28387 * 119.17232 * 269.72839 * 16 15 13 18 18 C 1.30400 * 122.45083 * 179.71365 * 17 16 15 19 19 C 1.50702 * 119.76596 * 180.31665 * 18 17 16 20 20 C 1.40471 * 120.46793 * 0.55822 * 18 17 16 21 21 C 1.50701 * 120.84324 * 179.75637 * 20 18 17 22 22 C 1.36600 * 118.31187 * 359.73531 * 20 18 17 23 23 C 1.50707 * 121.09651 * 180.02562 * 22 20 18 24 24 O 1.42905 * 109.47001 * 354.14734 * 23 22 20 25 25 C 1.34677 * 119.17181 * 89.99993 * 16 15 13 26 26 O 1.22060 * 120.34528 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46906 * 299.99753 * 1 2 3 28 28 H 1.08991 * 109.47335 * 60.00090 * 1 2 3 29 29 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47028 * 239.99970 * 2 1 3 31 31 H 1.08999 * 109.47154 * 119.99631 * 2 1 3 32 32 H 1.08996 * 109.47455 * 30.00176 * 4 3 2 33 33 H 1.09003 * 109.46935 * 150.00029 * 4 3 2 34 34 H 0.97001 * 120.00184 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46506 * 299.71940 * 15 13 3 36 36 H 1.08994 * 109.46896 * 59.72227 * 15 13 3 37 37 H 1.09001 * 109.47075 * 270.24038 * 19 18 17 38 38 H 1.08994 * 109.47504 * 30.23818 * 19 18 17 39 39 H 1.09000 * 109.47341 * 150.24674 * 19 18 17 40 40 H 1.09004 * 109.46922 * 242.79505 * 21 20 18 41 41 H 1.08998 * 109.47349 * 2.79744 * 21 20 18 42 42 H 1.09000 * 109.47138 * 122.79863 * 21 20 18 43 43 H 1.09001 * 109.47113 * 114.14110 * 23 22 20 44 44 H 1.08993 * 109.47369 * 234.14324 * 23 22 20 45 45 H 0.96699 * 113.99950 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3495 3.1274 -3.6171 9 14 5.9133 2.0966 -3.4171 10 1 6.6003 1.2397 -2.4177 11 1 5.9203 1.4184 -4.7381 12 1 6.6213 3.3975 -3.5247 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1673 15 6 1.9977 1.3040 2.4723 16 7 2.3201 2.1998 3.5858 17 7 3.5134 2.2051 4.0595 18 6 3.8715 2.9800 5.0452 19 6 5.2913 2.9418 5.5492 20 6 2.9421 3.8464 5.6440 21 6 3.3454 4.7416 6.7873 22 6 1.6635 3.8573 5.1634 23 6 0.6158 4.7625 5.7586 24 8 1.1535 5.4232 6.9060 25 6 1.3559 2.9932 4.0904 26 8 0.2280 2.9655 3.6246 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 3.6757 3.5185 -4.4426 35 1 0.9500 1.0098 2.5343 36 1 2.6282 0.4165 2.5257 37 1 5.3766 2.1952 6.3388 38 1 5.9610 2.6817 4.7295 39 1 5.5632 3.9207 5.9440 40 1 2.7768 4.4725 7.6775 41 1 4.4103 4.6201 6.9857 42 1 3.1407 5.7798 6.5255 43 1 0.3150 5.5051 5.0195 44 1 -0.2509 4.1709 6.0528 45 1 0.5325 6.0232 7.3413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363750435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:50 Heat of formation + Delta-G solvation = -77.057000 kcal Electronic energy + Delta-G solvation = -28381.988145 eV Core-core repulsion = 24400.419110 eV Total energy + Delta-G solvation = -3981.569036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.30603 -40.78138 -39.11273 -38.57977 -37.14166 -36.34948 -34.97757 -33.43273 -32.22729 -31.61638 -29.81934 -29.01639 -28.13093 -26.94273 -24.97932 -24.28234 -23.24849 -23.10307 -20.46202 -19.95989 -18.82143 -18.58547 -18.28040 -17.79511 -17.24851 -17.00599 -16.89057 -16.40907 -16.04023 -15.74480 -15.33029 -14.91112 -14.83108 -14.72773 -14.63109 -14.50333 -14.21690 -13.76658 -13.72624 -13.59028 -13.44105 -13.31084 -13.17913 -13.11509 -13.03793 -12.72623 -12.55837 -12.42518 -12.21831 -11.97454 -11.73920 -11.71250 -11.48163 -11.00171 -10.82376 -10.69260 -10.33379 -9.58928 -9.42728 -8.26691 -6.42046 -0.53898 0.55053 1.00434 1.34149 1.36734 1.48770 1.57620 2.06046 2.32255 2.42692 2.79922 3.03145 3.33378 3.42467 3.61827 3.66044 3.79932 3.90813 4.01273 4.11092 4.23673 4.34820 4.40536 4.47069 4.52398 4.56242 4.59362 4.81989 4.86411 4.90514 4.92166 4.97721 5.01052 5.06086 5.13802 5.19715 5.32175 5.33297 5.50473 5.61346 5.75553 5.99670 6.42368 6.56344 6.67636 6.85965 7.11116 7.16210 7.31842 8.81375 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003625 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.513908 B = 7722.273827 C = 8575.147849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.490 3.510 14 O -0.592 6.592 15 C 0.105 3.895 16 N -0.335 5.335 17 N -0.246 5.246 18 C 0.063 3.937 19 C -0.088 4.088 20 C -0.003 4.003 21 C -0.097 4.097 22 C -0.212 4.212 23 C 0.153 3.847 24 O -0.553 6.553 25 C 0.478 3.522 26 O -0.577 6.577 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.027 0.973 33 H -0.011 1.011 34 H 0.268 0.732 35 H 0.143 0.857 36 H 0.158 0.842 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -3.634 24.905 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.326 5.326 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.192 1.192 12 H -0.209 1.209 13 C 0.277 3.723 14 O -0.473 6.473 15 C -0.019 4.019 16 N -0.152 5.152 17 N -0.068 5.068 18 C -0.108 4.108 19 C -0.146 4.146 20 C -0.008 4.008 21 C -0.152 4.152 22 C -0.224 4.224 23 C 0.075 3.925 24 O -0.363 6.363 25 C 0.278 3.722 26 O -0.459 6.459 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.045 0.955 33 H 0.007 0.993 34 H 0.076 0.924 35 H 0.160 0.840 36 H 0.176 0.824 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.675 -4.011 23.656 24.003 hybrid contribution -0.584 1.092 -0.835 1.493 sum -1.259 -2.919 22.821 23.041 Atomic orbital electron populations 1.22184 0.94709 1.03853 1.01456 1.21903 0.95236 0.80798 1.04816 1.48238 1.63207 1.15379 1.05726 1.18739 0.95839 0.91147 0.79968 1.21710 0.97547 1.32200 1.06648 0.92518 1.25920 1.02710 0.94318 0.96338 1.70072 1.37886 1.34124 1.14867 0.85301 0.78556 0.78028 0.78524 1.18815 1.19175 1.20856 1.21115 0.77816 0.86775 0.86604 1.90655 1.48228 1.20556 1.87863 1.21918 1.06495 0.92652 0.80855 1.46009 1.06014 1.34775 1.28426 1.70757 1.02139 1.22398 1.11539 1.22696 1.00412 0.94489 0.93244 1.20820 0.85625 1.05863 1.02264 1.21419 0.90735 0.93038 0.95650 1.21053 1.02411 0.97851 0.93930 1.21156 0.98483 1.03285 0.99444 1.20082 0.91495 0.92879 0.88038 1.86801 1.43396 1.63306 1.42829 1.18078 0.85636 0.82692 0.85770 1.90897 1.21314 1.69528 1.64202 0.93023 0.94172 0.87829 0.89703 0.87647 0.95547 0.99284 0.92360 0.83963 0.82446 0.87335 0.90833 0.87027 0.87648 0.88936 0.89081 0.92828 0.91433 0.75193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 10.24 71.98 0.74 -3.71 16 2 C 0.09 2.96 5.94 86.38 0.51 3.48 16 3 N -0.59 -26.86 2.46 -826.15 -2.03 -28.89 16 4 C 0.26 15.00 5.16 85.64 0.44 15.45 16 5 C -0.54 -32.20 9.39 25.60 0.24 -31.96 16 6 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 7 C 0.01 0.35 5.46 84.66 0.46 0.82 16 8 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 9 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 10 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 C 0.49 22.74 7.74 87.66 0.68 23.42 16 14 O -0.59 -34.26 16.01 -3.04 -0.05 -34.31 16 15 C 0.10 3.57 4.60 85.64 0.39 3.97 16 16 N -0.34 -12.17 2.71 -476.15 -1.29 -13.46 16 17 N -0.25 -8.03 10.80 -47.21 -0.51 -8.54 16 18 C 0.06 1.60 6.88 43.32 0.30 1.90 16 19 C -0.09 -1.33 9.64 71.24 0.69 -0.64 16 20 C 0.00 -0.06 5.91 -19.70 -0.12 -0.18 16 21 C -0.10 -1.39 8.02 71.24 0.57 -0.82 16 22 C -0.21 -6.32 5.93 -19.53 -0.12 -6.43 16 23 C 0.15 3.46 7.04 71.24 0.50 3.96 16 24 O -0.55 -7.76 8.60 -148.98 -1.28 -9.04 16 25 C 0.48 17.99 7.46 84.97 0.63 18.62 16 26 O -0.58 -24.62 16.17 -5.51 -0.09 -24.71 16 27 H 0.05 1.42 7.25 -2.39 -0.02 1.40 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 31 H 0.11 2.44 6.43 -2.39 -0.02 2.43 16 32 H 0.03 1.51 8.07 -2.39 -0.02 1.50 16 33 H -0.01 -0.73 7.42 -2.39 -0.02 -0.75 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.14 4.34 6.44 -2.39 -0.02 4.33 16 36 H 0.16 4.13 7.39 -2.39 -0.02 4.11 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 1.10 6.13 -2.39 -0.01 1.08 16 40 H 0.11 1.33 6.90 -2.38 -0.02 1.31 16 41 H 0.09 0.82 5.59 -2.39 -0.01 0.81 16 42 H 0.09 1.39 6.99 -2.39 -0.02 1.37 16 43 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.40 1.78 9.12 -74.06 -0.68 1.11 16 Total: -1.00 -91.33 371.05 3.34 -87.99 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.35 Total: 12.86 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 5.92 Total: 27.87 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -3.54 Total: -108.42 kcal Atomic # 8 Polarization: -66.63 SS G_CDS: -1.42 Total: -68.05 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -91.33 3.34 -87.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363750435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.936 kcal (2) G-P(sol) polarization free energy of solvation -91.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds