Wall clock time and date at job start Tue Mar 31 2020 14:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47370 * 2 1 4 4 O 1.42901 * 109.47073 * 119.99968 * 2 1 3 5 5 C 1.52993 * 109.47166 * 239.99936 * 2 1 3 6 6 N 1.46496 * 109.47458 * 176.67304 * 5 2 1 7 7 C 1.34781 * 119.99662 * 275.59845 * 6 5 2 8 8 O 1.21578 * 119.99987 * 355.59403 * 7 6 5 9 9 N 1.34776 * 119.99782 * 175.59319 * 7 6 5 10 10 C 1.39463 * 119.99872 * 185.02047 * 9 7 6 11 11 C 1.38644 * 119.64555 * 185.80483 * 10 9 7 12 12 C 1.40827 * 118.67100 * 179.97438 * 11 10 9 13 13 C 1.41546 * 120.99119 * 179.97438 * 12 11 10 14 14 H 1.08009 * 119.99580 * 210.06693 * 13 12 11 15 15 C 1.40025 * 120.00160 * 30.07813 * 13 12 11 16 16 N 1.30741 * 120.00440 * 7.88927 * 15 13 12 17 17 Si 1.86802 * 119.99730 * 187.89583 * 15 13 12 18 18 H 1.48501 * 109.47444 * 89.99786 * 17 15 13 19 19 H 1.48499 * 109.47331 * 209.99650 * 17 15 13 20 20 H 1.48498 * 109.47317 * 329.99785 * 17 15 13 21 21 C 1.41160 * 118.00457 * 0.02562 * 12 11 10 22 22 C 1.36586 * 119.12956 * 359.97438 * 21 12 11 23 23 N 1.32065 * 121.25927 * 359.74411 * 22 21 12 24 24 C 1.46503 * 120.00279 * 95.59588 * 6 5 2 25 25 H 1.08991 * 109.46622 * 1.64022 * 24 6 5 26 26 C 1.53001 * 109.47096 * 241.63839 * 24 6 5 27 27 C 1.52998 * 109.46812 * 121.64057 * 24 6 5 28 28 O 1.42901 * 109.47240 * 294.10860 * 27 24 6 29 29 H 1.09003 * 109.46858 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46882 * 299.99764 * 1 2 3 31 31 H 1.09001 * 109.46813 * 60.00230 * 1 2 3 32 32 H 0.96698 * 114.00008 * 299.99883 * 4 2 1 33 33 H 1.09004 * 109.47513 * 56.66668 * 5 2 1 34 34 H 1.09002 * 109.47561 * 296.67226 * 5 2 1 35 35 H 0.97002 * 120.00085 * 5.01701 * 9 7 6 36 36 H 1.07997 * 120.66443 * 0.02562 * 11 10 9 37 37 H 0.96996 * 120.00315 * 180.02562 * 16 15 13 38 38 H 1.08006 * 120.43275 * 179.97438 * 21 12 11 39 39 H 1.08003 * 119.37025 * 180.02562 * 22 21 12 40 40 H 1.08998 * 109.47363 * 308.48714 * 26 24 6 41 41 H 1.09001 * 109.47060 * 68.48972 * 26 24 6 42 42 H 1.08994 * 109.46949 * 188.48406 * 26 24 6 43 43 H 1.09002 * 109.46686 * 174.11143 * 27 24 6 44 44 H 1.09003 * 109.47532 * 54.10914 * 27 24 6 45 45 H 0.96705 * 114.00104 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7212 -1.2492 6 7 3.5028 -0.6522 -1.2900 7 6 4.1120 0.4315 -1.8106 8 8 3.4500 1.3156 -2.3187 9 7 5.4551 0.5350 -1.7679 10 6 6.0790 1.7010 -2.2109 11 6 7.4628 1.7555 -2.2774 12 6 8.0713 2.9428 -2.7282 13 6 9.4798 3.0525 -2.8150 14 1 9.9560 4.0125 -2.6802 15 6 10.2558 1.9165 -3.0758 16 7 9.6768 0.7875 -3.3913 17 14 12.1184 2.0139 -2.9726 18 1 12.5554 1.6901 -1.5908 19 1 12.7183 1.0422 -3.9218 20 1 12.5625 3.3869 -3.3232 21 6 7.2344 4.0206 -3.0899 22 6 5.8802 3.8731 -2.9907 23 7 5.3430 2.7428 -2.5689 24 6 4.3034 -1.7611 -0.7649 25 1 3.6416 -2.5535 -0.4156 26 6 5.1622 -1.2635 0.3995 27 6 5.2099 -2.3043 -1.8713 28 8 4.4084 -2.8932 -2.8975 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7211 -0.2701 1.9979 33 1 1.6288 -0.2431 -2.1382 34 1 1.7263 -1.7647 -1.2199 35 1 5.9878 -0.2014 -1.4290 36 1 8.0620 0.9042 -1.9901 37 1 10.2143 0.0005 -3.5716 38 1 7.6595 4.9496 -3.4404 39 1 5.2362 4.6951 -3.2667 40 1 5.7132 -0.3751 0.0910 41 1 4.5201 -1.0172 1.2452 42 1 5.8649 -2.0436 0.6920 43 1 5.8790 -3.0577 -1.4556 44 1 5.7978 -1.4888 -2.2925 45 1 4.9182 -3.2596 -3.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364163941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:13 Heat of formation + Delta-G solvation = -68.409130 kcal Electronic energy + Delta-G solvation = -28760.743447 eV Core-core repulsion = 24779.549411 eV Total energy + Delta-G solvation = -3981.194036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48772 -38.39152 -37.34153 -36.98213 -34.99238 -34.43467 -33.76120 -31.97656 -30.49124 -30.29120 -28.65766 -26.24475 -26.02026 -25.77330 -22.80392 -21.99649 -21.42014 -20.84671 -19.47495 -17.92254 -17.47875 -17.25306 -16.82218 -16.35130 -15.47811 -15.35019 -14.92895 -14.63217 -14.42292 -14.35854 -14.15587 -13.76697 -13.57549 -13.29715 -12.97502 -12.82962 -12.58038 -12.57552 -12.28646 -12.22312 -12.02130 -12.00289 -11.49130 -11.39969 -11.22950 -10.99778 -10.89963 -10.78140 -10.25363 -10.11850 -10.06612 -9.96224 -9.63527 -9.46192 -9.35036 -8.32651 -7.90114 -7.71613 -6.97072 -6.73821 -4.61377 2.71320 2.81405 3.01026 3.02311 3.05773 3.25333 3.86270 3.88372 4.12384 4.14912 4.26446 4.72662 4.87706 5.03113 5.09699 5.12963 5.22780 5.28804 5.40103 5.46291 5.51238 5.68238 5.69379 5.73474 5.85781 5.88006 5.94287 6.01141 6.08613 6.27281 6.53173 6.63168 6.78855 6.88678 6.97785 7.13520 7.31814 7.43944 7.51115 7.60486 7.61893 7.88205 8.11582 8.39261 8.48166 8.73865 8.78246 9.23623 9.74092 10.13873 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.003774 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.031247 B = 7417.077977 C = 8332.320645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.081 3.919 3 H 0.062 0.938 4 O -0.563 6.563 5 C 0.151 3.849 6 N -0.616 5.616 7 C 0.698 3.302 8 O -0.534 6.534 9 N -0.672 5.672 10 C 0.351 3.649 11 C -0.240 4.240 12 C 0.147 3.853 13 C -0.459 4.459 14 H 0.081 0.919 15 C 0.076 3.924 16 N -0.800 5.800 17 Si 0.914 3.086 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.280 4.280 22 C 0.118 3.882 23 N -0.549 5.549 24 C 0.147 3.853 25 H 0.099 0.901 26 C -0.180 4.180 27 C 0.044 3.956 28 O -0.565 6.565 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.371 0.629 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.406 0.594 36 H 0.127 0.873 37 H 0.279 0.721 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 -8.925 7.270 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.021 3.979 3 H 0.080 0.920 4 O -0.368 6.368 5 C 0.027 3.973 6 N -0.354 5.354 7 C 0.400 3.600 8 O -0.406 6.406 9 N -0.327 5.327 10 C 0.124 3.876 11 C -0.266 4.266 12 C 0.138 3.862 13 C -0.491 4.491 14 H 0.099 0.901 15 C -0.141 4.141 16 N -0.427 5.427 17 Si 0.739 3.261 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.304 4.304 22 C -0.036 4.036 23 N -0.267 5.267 24 C 0.042 3.958 25 H 0.117 0.883 26 C -0.238 4.238 27 C -0.036 4.036 28 O -0.370 6.370 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.218 0.782 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.248 0.752 36 H 0.144 0.856 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.356 -8.808 6.824 15.212 hybrid contribution 2.325 -0.207 0.114 2.337 sum -8.030 -9.015 6.938 13.925 Atomic orbital electron populations 1.22423 0.96309 1.02502 1.02670 1.22357 0.92475 0.96617 0.86452 0.92018 1.86507 1.77231 1.57385 1.15714 1.21244 0.79152 1.00844 0.96068 1.47097 1.05755 1.17778 1.64775 1.16021 0.82235 0.82264 0.79491 1.90976 1.63236 1.39127 1.47251 1.43551 1.05484 1.17520 1.66117 1.18087 0.88421 0.85772 0.95292 1.21535 0.90545 1.02555 1.11981 1.17566 0.93389 0.89757 0.85462 1.19551 0.90883 0.95218 1.43417 0.90099 1.25906 1.01410 0.94628 0.92192 1.69749 1.37971 1.01324 1.33613 0.86214 0.81690 0.79324 0.78900 1.19314 1.20272 1.18584 1.21723 0.94350 1.01386 1.12929 1.21496 0.92512 0.93595 0.96035 1.67218 1.39018 0.99787 1.20708 1.21022 0.93515 0.89482 0.91778 0.88313 1.22433 1.00439 1.02181 0.98784 1.23041 0.93467 0.97334 0.89741 1.86458 1.37237 1.79202 1.34108 0.91939 0.92404 0.91306 0.78224 0.88925 0.90207 0.75172 0.85573 0.90973 0.88001 0.86035 0.91257 0.90089 0.91310 0.92340 0.92257 0.77430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.54 37.16 0.35 -1.36 16 2 C 0.08 1.00 3.79 -26.73 -0.10 0.90 16 3 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 4 O -0.56 -6.29 12.35 -35.23 -0.44 -6.72 16 5 C 0.15 2.12 5.06 -4.05 -0.02 2.10 16 6 N -0.62 -9.90 2.32 -171.81 -0.40 -10.30 16 7 C 0.70 14.47 7.54 -86.91 -0.66 13.81 16 8 O -0.53 -13.09 14.28 5.30 0.08 -13.02 16 9 N -0.67 -14.04 3.58 -15.86 -0.06 -14.10 16 10 C 0.35 8.74 7.41 -154.67 -1.15 7.59 16 11 C -0.24 -6.16 8.59 -38.45 -0.33 -6.49 16 12 C 0.15 3.88 5.57 -106.55 -0.59 3.28 16 13 C -0.46 -11.82 9.12 -37.65 -0.34 -12.16 16 14 H 0.08 2.00 7.86 -52.48 -0.41 1.58 16 15 C 0.08 1.84 5.32 -17.35 -0.09 1.74 16 16 N -0.80 -19.74 10.86 55.55 0.60 -19.14 16 17 Si 0.91 18.01 29.57 -169.99 -5.03 12.98 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 19 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 C -0.28 -6.94 9.85 -39.07 -0.38 -7.32 16 22 C 0.12 2.87 11.10 -18.05 -0.20 2.67 16 23 N -0.55 -14.34 7.89 -12.76 -0.10 -14.44 16 24 C 0.15 1.95 2.81 -67.93 -0.19 1.75 16 25 H 0.10 1.22 7.71 -51.93 -0.40 0.82 16 26 C -0.18 -2.22 9.02 37.16 0.34 -1.88 16 27 C 0.04 0.57 6.14 37.16 0.23 0.79 16 28 O -0.57 -7.52 13.62 -35.23 -0.48 -8.00 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.37 2.78 9.08 45.56 0.41 3.19 16 33 H 0.09 1.41 7.54 -51.93 -0.39 1.02 16 34 H 0.08 0.99 7.79 -51.93 -0.40 0.58 16 35 H 0.41 7.34 3.46 -40.82 -0.14 7.20 16 36 H 0.13 3.20 6.34 -52.49 -0.33 2.87 16 37 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 38 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 39 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 40 H 0.07 1.02 5.06 -51.93 -0.26 0.76 16 41 H 0.08 1.00 7.37 -51.93 -0.38 0.62 16 42 H 0.07 0.68 8.11 -51.93 -0.42 0.25 16 43 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 44 H 0.06 0.92 5.13 -51.93 -0.27 0.65 16 45 H 0.38 3.59 9.12 45.56 0.42 4.00 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -33.52 366.30 -8.12 -41.64 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -4.68 Total: 20.13 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -3.14 Total: 5.44 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.05 Total: -57.98 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.84 Total: -27.74 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.52 -8.12 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364163941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.770 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds