Wall clock time and date at job start Tue Mar 31 2020 14:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47074 * 2 1 4 4 C 1.53000 * 109.47185 * 239.99233 * 2 1 3 5 5 O 1.42900 * 109.47166 * 175.00112 * 4 2 1 6 6 N 1.46499 * 109.46823 * 119.99513 * 2 1 3 7 7 C 1.46504 * 120.00019 * 58.26617 * 6 2 1 8 8 C 1.53003 * 109.47239 * 89.99976 * 7 6 2 9 9 H 1.09005 * 109.46807 * 305.00170 * 8 7 6 10 10 C 1.53002 * 109.47263 * 185.00077 * 8 7 6 11 11 O 1.42896 * 109.47185 * 64.99937 * 8 7 6 12 12 C 1.34779 * 119.99955 * 238.26405 * 6 2 1 13 13 O 1.21581 * 119.99984 * 184.46126 * 12 6 2 14 14 N 1.34773 * 120.00090 * 4.45923 * 12 6 2 15 15 C 1.39462 * 119.99913 * 185.41953 * 14 12 6 16 16 C 1.38640 * 119.64548 * 174.82752 * 15 14 12 17 17 C 1.40821 * 118.67453 * 179.97438 * 16 15 14 18 18 C 1.41538 * 120.99884 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00114 * 147.05192 * 18 17 16 20 20 C 1.40034 * 120.00309 * 327.05419 * 18 17 16 21 21 N 1.30745 * 119.99839 * 357.75394 * 20 18 17 22 22 Si 1.86802 * 120.00286 * 177.75586 * 20 18 17 23 23 H 1.48502 * 109.47080 * 90.00039 * 22 20 18 24 24 H 1.48496 * 109.47099 * 209.99720 * 22 20 18 25 25 H 1.48503 * 109.46877 * 330.00168 * 22 20 18 26 26 C 1.41163 * 118.00486 * 0.02562 * 17 16 15 27 27 C 1.36590 * 119.12713 * 359.97438 * 26 17 16 28 28 N 1.32075 * 121.26017 * 359.74680 * 27 26 17 29 29 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47286 * 300.00485 * 1 2 3 31 31 H 1.08998 * 109.47253 * 60.00538 * 1 2 3 32 32 H 1.09005 * 109.46677 * 55.00661 * 4 2 1 33 33 H 1.08992 * 109.47436 * 295.00420 * 4 2 1 34 34 H 0.96700 * 114.00142 * 180.02562 * 5 4 2 35 35 H 1.09009 * 109.47033 * 209.99777 * 7 6 2 36 36 H 1.08995 * 109.46794 * 329.99631 * 7 6 2 37 37 H 1.08996 * 109.46701 * 59.99654 * 10 8 7 38 38 H 1.08997 * 109.47155 * 179.97438 * 10 8 7 39 39 H 1.08997 * 109.46973 * 300.00006 * 10 8 7 40 40 H 0.96700 * 114.00445 * 59.99891 * 11 8 7 41 41 H 0.97001 * 120.00021 * 5.41618 * 14 12 6 42 42 H 1.08002 * 120.66711 * 0.02562 * 16 15 14 43 43 H 0.96992 * 119.99944 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.44157 * 180.02562 * 26 17 16 45 45 H 1.08001 * 119.37519 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 3.4642 -0.6206 -1.3093 6 7 2.0183 -0.6905 1.1962 7 6 1.6332 -2.0815 1.4475 8 6 2.6559 -3.0185 0.8016 9 1 2.7506 -2.7782 -0.2574 10 6 2.1891 -4.4674 0.9561 11 8 3.9227 -2.8553 1.4422 12 6 2.8217 -0.0461 2.0656 13 8 3.2925 -0.6422 3.0149 14 7 3.1034 1.2591 1.8825 15 6 4.0225 1.8975 2.7147 16 6 4.3877 3.2093 2.4543 17 6 5.3170 3.8343 3.3081 18 6 5.7248 5.1716 3.0877 19 1 5.9678 5.8073 3.9263 20 6 5.8132 5.6705 1.7822 21 7 5.5616 4.8886 0.7651 22 14 6.2908 7.4533 1.4940 23 1 7.7668 7.5562 1.3678 24 1 5.6521 7.9412 0.2453 25 1 5.8331 8.2798 2.6398 26 6 5.8304 3.0866 4.3898 27 6 5.4108 1.7988 4.5664 28 7 4.5332 1.2456 3.7489 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6054 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.8572 -1.0563 -2.0779 35 1 1.6033 -2.2618 2.5222 36 1 0.6482 -2.2687 1.0202 37 1 1.2228 -4.5918 0.4675 38 1 2.9174 -5.1348 0.4956 39 1 2.0944 -4.7075 2.0151 40 1 3.9131 -3.0525 2.3889 41 1 2.6668 1.7545 1.1719 42 1 3.9673 3.7417 1.6139 43 1 5.6232 5.2340 -0.1391 44 1 6.5449 3.5271 5.0692 45 1 5.8007 1.2232 5.3929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364163943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:16 Heat of formation + Delta-G solvation = -75.123591 kcal Electronic energy + Delta-G solvation = -28735.608356 eV Core-core repulsion = 24754.123160 eV Total energy + Delta-G solvation = -3981.485197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25853 -38.48574 -37.17277 -36.90526 -35.07527 -34.17099 -33.55889 -31.63376 -30.68373 -30.33920 -28.59199 -26.40209 -26.13201 -25.81983 -22.26911 -21.82511 -21.67002 -20.93820 -19.15367 -18.35747 -17.46655 -17.33837 -16.53780 -15.85362 -15.52525 -15.20987 -14.99179 -14.62940 -14.46133 -14.12963 -14.10963 -14.02772 -13.69453 -13.41196 -12.83738 -12.75087 -12.56518 -12.48819 -12.38649 -12.14765 -12.09478 -11.80481 -11.49302 -11.36664 -11.15979 -11.11133 -10.81122 -10.70995 -10.18251 -10.12035 -10.03153 -9.93310 -9.58262 -9.34500 -9.28658 -8.26809 -7.77665 -7.62218 -6.87843 -6.61165 -4.53240 2.80717 2.90028 2.95703 3.07563 3.12120 3.32262 3.94658 3.98469 4.04967 4.28083 4.57936 4.73132 4.81007 4.82595 4.93968 5.07937 5.12240 5.17698 5.26102 5.27817 5.35545 5.49397 5.62048 5.65862 5.73601 5.77986 5.90342 5.92785 6.01355 6.18189 6.59196 6.73028 6.82245 6.91260 7.06525 7.23765 7.34455 7.52003 7.60926 7.63540 7.98125 8.02641 8.20409 8.48873 8.57477 8.83055 8.87593 9.34296 9.82663 10.25666 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.003711 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.131160 B = 7543.899140 C = 8453.325497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 H 0.093 0.907 4 C 0.062 3.938 5 O -0.552 6.552 6 N -0.618 5.618 7 C 0.103 3.897 8 C 0.083 3.917 9 H 0.096 0.904 10 C -0.185 4.185 11 O -0.543 6.543 12 C 0.708 3.292 13 O -0.528 6.528 14 N -0.666 5.666 15 C 0.356 3.644 16 C -0.235 4.235 17 C 0.146 3.854 18 C -0.462 4.462 19 H 0.079 0.921 20 C 0.074 3.926 21 N -0.803 5.803 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.279 4.279 27 C 0.116 3.884 28 N -0.544 5.544 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.375 0.625 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.376 0.624 41 H 0.400 0.600 42 H 0.128 0.872 43 H 0.279 0.721 44 H 0.101 0.899 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.516 -11.260 -7.575 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 H 0.111 0.889 4 C -0.017 4.017 5 O -0.356 6.356 6 N -0.357 5.357 7 C -0.022 4.022 8 C 0.022 3.978 9 H 0.114 0.886 10 C -0.244 4.244 11 O -0.348 6.348 12 C 0.409 3.591 13 O -0.399 6.399 14 N -0.315 5.315 15 C 0.130 3.870 16 C -0.261 4.261 17 C 0.137 3.863 18 C -0.494 4.494 19 H 0.098 0.902 20 C -0.142 4.142 21 N -0.430 5.430 22 Si 0.740 3.260 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.303 4.303 27 C -0.039 4.039 28 N -0.263 5.263 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.221 0.779 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.224 0.776 41 H 0.237 0.763 42 H 0.146 0.854 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.376 -12.114 -7.008 18.035 hybrid contribution 0.139 1.413 -1.031 1.754 sum -11.236 -10.701 -8.039 17.476 Atomic orbital electron populations 1.22122 0.94040 1.02702 1.03170 1.21077 0.93923 0.97273 0.84754 0.88948 1.22642 0.82758 0.99156 0.97138 1.86714 1.18886 1.79883 1.50131 1.47007 1.53068 1.12342 1.23277 1.21977 0.97184 0.80861 1.02129 1.22475 0.85007 0.92276 0.98037 0.88623 1.22513 1.01573 0.97767 1.02513 1.86640 1.29686 1.91909 1.26604 1.15804 0.79244 0.81591 0.82468 1.90929 1.52761 1.65604 1.30566 1.42710 1.44603 1.09212 1.34989 1.18015 0.90256 0.89014 0.89752 1.21603 1.04609 0.93542 1.06341 1.17572 0.86971 0.92854 0.88871 1.19506 1.40757 0.96378 0.92786 0.90243 1.25895 0.93076 0.99472 0.95793 1.69748 1.37112 1.36291 0.99815 0.86210 0.79354 0.81930 0.78550 1.19512 1.20263 1.18613 1.21746 1.07386 0.96243 1.04894 1.21492 0.93583 0.92531 0.96247 1.67222 1.15492 1.37618 1.05962 0.91961 0.91214 0.91146 0.93082 0.93402 0.77895 0.89720 0.90580 0.92062 0.91868 0.92193 0.77627 0.76280 0.85384 0.91048 0.88060 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.14 37.16 0.34 -1.02 16 2 C 0.13 1.60 2.90 -67.93 -0.20 1.40 16 3 H 0.09 1.23 5.49 -51.93 -0.29 0.95 16 4 C 0.06 0.64 5.73 37.16 0.21 0.85 16 5 O -0.55 -7.48 13.19 -35.23 -0.46 -7.95 16 6 N -0.62 -9.24 2.33 -171.80 -0.40 -9.64 16 7 C 0.10 1.26 4.55 -4.04 -0.02 1.24 16 8 C 0.08 1.01 3.58 -26.73 -0.10 0.91 16 9 H 0.10 1.16 4.92 -51.93 -0.26 0.90 16 10 C -0.19 -1.66 9.53 37.16 0.35 -1.31 16 11 O -0.54 -9.00 12.08 -47.74 -0.58 -9.58 16 12 C 0.71 14.55 7.91 -86.92 -0.69 13.86 16 13 O -0.53 -12.56 12.91 -7.21 -0.09 -12.65 16 14 N -0.67 -14.35 5.27 -15.86 -0.08 -14.43 16 15 C 0.36 9.15 7.42 -154.68 -1.15 8.00 16 16 C -0.24 -6.25 8.58 -38.46 -0.33 -6.58 16 17 C 0.15 3.97 5.56 -106.55 -0.59 3.38 16 18 C -0.46 -12.29 9.12 -37.65 -0.34 -12.63 16 19 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 20 C 0.07 1.87 5.39 -17.34 -0.09 1.77 16 21 N -0.80 -20.73 10.80 55.55 0.60 -20.13 16 22 Si 0.91 18.68 29.56 -169.99 -5.02 13.66 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 26 C -0.28 -7.10 9.85 -39.07 -0.38 -7.49 16 27 C 0.12 2.89 11.10 -18.04 -0.20 2.69 16 28 N -0.54 -14.52 7.86 -12.75 -0.10 -14.62 16 29 H 0.06 0.44 6.60 -51.93 -0.34 0.10 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.42 5.75 -51.93 -0.30 0.12 16 34 H 0.37 3.42 9.12 45.56 0.42 3.83 16 35 H 0.08 1.15 7.49 -51.92 -0.39 0.76 16 36 H 0.08 0.68 6.34 -51.93 -0.33 0.35 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.38 5.83 8.64 45.56 0.39 6.23 16 41 H 0.40 7.50 6.13 -40.82 -0.25 7.25 16 42 H 0.13 3.40 6.36 -52.49 -0.33 3.07 16 43 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 44 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 45 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -35.32 363.62 -8.45 -43.77 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -4.60 Total: 20.98 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -3.18 Total: 5.10 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.02 Total: -58.82 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.13 Total: -30.17 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.32 -8.45 -43.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364163943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.356 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds