Wall clock time and date at job start Tue Mar 31 2020 14:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47074 * 2 1 4 4 C 1.53000 * 109.47185 * 239.99233 * 2 1 3 5 5 O 1.42900 * 109.47166 * 175.00112 * 4 2 1 6 6 N 1.46499 * 109.46823 * 119.99513 * 2 1 3 7 7 C 1.46504 * 120.00019 * 58.26617 * 6 2 1 8 8 C 1.53003 * 109.47239 * 89.99976 * 7 6 2 9 9 H 1.09005 * 109.46807 * 305.00170 * 8 7 6 10 10 C 1.53002 * 109.47263 * 185.00077 * 8 7 6 11 11 O 1.42896 * 109.47185 * 64.99937 * 8 7 6 12 12 C 1.34779 * 119.99955 * 238.26405 * 6 2 1 13 13 O 1.21581 * 119.99984 * 184.46126 * 12 6 2 14 14 N 1.34773 * 120.00090 * 4.45923 * 12 6 2 15 15 C 1.39462 * 119.99913 * 185.41953 * 14 12 6 16 16 C 1.38640 * 119.64548 * 174.82752 * 15 14 12 17 17 C 1.40821 * 118.67453 * 179.97438 * 16 15 14 18 18 C 1.41538 * 120.99884 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00114 * 147.05192 * 18 17 16 20 20 C 1.40034 * 120.00309 * 327.05419 * 18 17 16 21 21 N 1.30745 * 119.99839 * 357.75394 * 20 18 17 22 22 Si 1.86802 * 120.00286 * 177.75586 * 20 18 17 23 23 H 1.48502 * 109.47080 * 90.00039 * 22 20 18 24 24 H 1.48496 * 109.47099 * 209.99720 * 22 20 18 25 25 H 1.48503 * 109.46877 * 330.00168 * 22 20 18 26 26 C 1.41163 * 118.00486 * 0.02562 * 17 16 15 27 27 C 1.36590 * 119.12713 * 359.97438 * 26 17 16 28 28 N 1.32075 * 121.26017 * 359.74680 * 27 26 17 29 29 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47286 * 300.00485 * 1 2 3 31 31 H 1.08998 * 109.47253 * 60.00538 * 1 2 3 32 32 H 1.09005 * 109.46677 * 55.00661 * 4 2 1 33 33 H 1.08992 * 109.47436 * 295.00420 * 4 2 1 34 34 H 0.96700 * 114.00142 * 180.02562 * 5 4 2 35 35 H 1.09009 * 109.47033 * 209.99777 * 7 6 2 36 36 H 1.08995 * 109.46794 * 329.99631 * 7 6 2 37 37 H 1.08996 * 109.46701 * 59.99654 * 10 8 7 38 38 H 1.08997 * 109.47155 * 179.97438 * 10 8 7 39 39 H 1.08997 * 109.46973 * 300.00006 * 10 8 7 40 40 H 0.96700 * 114.00445 * 59.99891 * 11 8 7 41 41 H 0.97001 * 120.00021 * 5.41618 * 14 12 6 42 42 H 1.08002 * 120.66711 * 0.02562 * 16 15 14 43 43 H 0.96992 * 119.99944 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.44157 * 180.02562 * 26 17 16 45 45 H 1.08001 * 119.37519 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 3.4642 -0.6206 -1.3093 6 7 2.0183 -0.6905 1.1962 7 6 1.6332 -2.0815 1.4475 8 6 2.6559 -3.0185 0.8016 9 1 2.7506 -2.7782 -0.2574 10 6 2.1891 -4.4674 0.9561 11 8 3.9227 -2.8553 1.4422 12 6 2.8217 -0.0461 2.0656 13 8 3.2925 -0.6422 3.0149 14 7 3.1034 1.2591 1.8825 15 6 4.0225 1.8975 2.7147 16 6 4.3877 3.2093 2.4543 17 6 5.3170 3.8343 3.3081 18 6 5.7248 5.1716 3.0877 19 1 5.9678 5.8073 3.9263 20 6 5.8132 5.6705 1.7822 21 7 5.5616 4.8886 0.7651 22 14 6.2908 7.4533 1.4940 23 1 7.7668 7.5562 1.3678 24 1 5.6521 7.9412 0.2453 25 1 5.8331 8.2798 2.6398 26 6 5.8304 3.0866 4.3898 27 6 5.4108 1.7988 4.5664 28 7 4.5332 1.2456 3.7489 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6054 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.8572 -1.0563 -2.0779 35 1 1.6033 -2.2618 2.5222 36 1 0.6482 -2.2687 1.0202 37 1 1.2228 -4.5918 0.4675 38 1 2.9174 -5.1348 0.4956 39 1 2.0944 -4.7075 2.0151 40 1 3.9131 -3.0525 2.3889 41 1 2.6668 1.7545 1.1719 42 1 3.9673 3.7417 1.6139 43 1 5.6232 5.2340 -0.1391 44 1 6.5449 3.5271 5.0692 45 1 5.8007 1.2232 5.3929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364163943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:15 Heat of formation + Delta-G solvation = -102.188615 kcal Electronic energy + Delta-G solvation = -28736.781984 eV Core-core repulsion = 24754.123160 eV Total energy + Delta-G solvation = -3982.658824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69282 -40.18148 -38.59045 -37.93102 -36.24193 -36.01492 -35.37218 -32.63897 -32.42064 -31.70095 -30.32243 -27.89168 -27.31712 -27.00664 -23.88279 -23.58645 -22.73087 -22.40691 -20.61506 -19.79529 -19.23369 -18.27112 -17.85056 -17.39426 -17.06632 -16.52249 -16.44159 -16.03333 -15.91318 -15.78364 -15.42361 -15.19642 -15.00147 -14.64187 -14.59472 -14.32313 -14.13593 -13.56248 -13.32758 -13.17954 -13.15173 -12.93153 -12.83727 -12.67277 -12.66111 -12.49698 -12.13098 -12.03965 -11.86180 -11.65834 -11.42141 -11.17410 -11.14845 -10.98516 -10.82727 -9.81894 -9.58701 -9.48557 -8.77029 -8.52128 -6.56583 0.86208 1.03567 1.41313 1.55034 1.57106 1.61973 2.22910 2.41090 2.81309 2.90365 3.28198 3.58576 3.76189 3.83868 3.92687 4.03916 4.16161 4.20825 4.28445 4.38766 4.44052 4.55622 4.61535 4.70359 4.74587 4.83640 4.86867 4.88276 4.92738 4.96077 5.11355 5.15706 5.25243 5.26672 5.32035 5.51409 5.66540 5.70844 5.86840 5.99988 6.27447 6.58446 6.81837 6.85688 6.88628 6.91937 6.96537 7.68216 7.94158 8.37001 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.003711 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.131160 B = 7543.899140 C = 8453.325497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.123 3.877 3 H 0.070 0.930 4 C 0.062 3.938 5 O -0.591 6.591 6 N -0.607 5.607 7 C 0.100 3.900 8 C 0.079 3.921 9 H 0.099 0.901 10 C -0.175 4.175 11 O -0.576 6.576 12 C 0.698 3.302 13 O -0.568 6.568 14 N -0.664 5.664 15 C 0.352 3.648 16 C -0.253 4.253 17 C 0.118 3.882 18 C -0.491 4.491 19 H 0.084 0.916 20 C 0.033 3.967 21 N -0.829 5.829 22 Si 0.993 3.007 23 H -0.265 1.265 24 H -0.265 1.265 25 H -0.257 1.257 26 C -0.291 4.291 27 C 0.110 3.890 28 N -0.567 5.567 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.390 0.610 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.375 0.625 41 H 0.410 0.590 42 H 0.121 0.879 43 H 0.288 0.712 44 H 0.118 0.882 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.042 -11.437 -9.340 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.019 3.981 3 H 0.088 0.912 4 C -0.016 4.016 5 O -0.399 6.399 6 N -0.344 5.344 7 C -0.023 4.023 8 C 0.019 3.981 9 H 0.117 0.883 10 C -0.233 4.233 11 O -0.382 6.382 12 C 0.399 3.601 13 O -0.442 6.442 14 N -0.314 5.314 15 C 0.124 3.876 16 C -0.279 4.279 17 C 0.109 3.891 18 C -0.522 4.522 19 H 0.102 0.898 20 C -0.181 4.181 21 N -0.456 5.456 22 Si 0.813 3.187 23 H -0.190 1.190 24 H -0.190 1.190 25 H -0.180 1.180 26 C -0.315 4.315 27 C -0.043 4.043 28 N -0.287 5.287 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.239 0.761 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.222 0.778 41 H 0.249 0.751 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.136 0.864 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.959 -12.335 -8.835 19.954 hybrid contribution 0.572 1.397 -0.555 1.608 sum -12.387 -10.938 -9.390 19.006 Atomic orbital electron populations 1.22077 0.90798 1.04342 1.03855 1.21450 0.96401 0.96086 0.84198 0.91182 1.22782 0.81344 1.00411 0.97102 1.86666 1.21026 1.80593 1.51574 1.47025 1.51253 1.13170 1.22973 1.22233 0.99276 0.79169 1.01655 1.22684 0.83490 0.94359 0.97594 0.88334 1.22405 1.02877 0.95024 1.02998 1.86600 1.32566 1.92368 1.26688 1.16083 0.79812 0.81143 0.83035 1.90887 1.54578 1.66158 1.32543 1.42689 1.44019 1.10019 1.34709 1.18255 0.90426 0.89067 0.89819 1.21554 1.05514 0.94183 1.06645 1.18009 0.87474 0.93840 0.89746 1.19816 1.41869 0.96554 0.93989 0.89821 1.26836 0.92324 1.04106 0.94862 1.69818 1.36839 1.38405 1.00546 0.85044 0.79034 0.75741 0.78861 1.19023 1.18982 1.18021 1.21938 1.08009 0.96518 1.05057 1.21974 0.93010 0.92757 0.96604 1.67358 1.16439 1.38168 1.06714 0.89762 0.92370 0.88687 0.90087 0.91317 0.76068 0.91407 0.86205 0.89071 0.92053 0.92126 0.77780 0.75112 0.86148 0.90166 0.86431 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.14 71.98 0.66 -1.43 16 2 C 0.12 2.72 2.90 44.99 0.13 2.85 16 3 H 0.07 1.86 5.49 -2.39 -0.01 1.85 16 4 C 0.06 1.11 5.73 71.98 0.41 1.52 16 5 O -0.59 -15.56 13.19 -148.98 -1.96 -17.52 16 6 N -0.61 -17.79 2.33 -815.71 -1.90 -19.69 16 7 C 0.10 2.27 4.55 86.38 0.39 2.67 16 8 C 0.08 1.80 3.58 30.60 0.11 1.91 16 9 H 0.10 2.18 4.92 -2.38 -0.01 2.17 16 10 C -0.18 -2.70 9.53 71.98 0.69 -2.02 16 11 O -0.58 -19.46 12.08 -137.02 -1.66 -21.12 16 12 C 0.70 29.46 7.91 179.05 1.42 30.87 16 13 O -0.57 -27.98 12.91 7.99 0.10 -27.88 16 14 N -0.66 -29.71 5.27 -322.37 -1.70 -31.41 16 15 C 0.35 18.82 7.42 132.76 0.98 19.80 16 16 C -0.25 -13.99 8.58 23.00 0.20 -13.79 16 17 C 0.12 6.62 5.56 -21.12 -0.12 6.51 16 18 C -0.49 -26.57 9.12 23.52 0.21 -26.35 16 19 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 20 C 0.03 1.67 5.39 85.29 0.46 2.13 16 21 N -0.83 -43.33 10.80 21.84 0.24 -43.10 16 22 Si 0.99 37.83 29.56 68.60 2.03 39.86 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 25 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 26 C -0.29 -15.22 9.85 22.60 0.22 -14.99 16 27 C 0.11 5.64 11.10 84.27 0.94 6.57 16 28 N -0.57 -31.26 7.86 -194.27 -1.53 -32.78 16 29 H 0.08 0.79 6.60 -2.39 -0.02 0.78 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.07 0.95 5.75 -2.39 -0.01 0.93 16 34 H 0.39 6.77 9.12 -74.06 -0.68 6.09 16 35 H 0.07 1.82 7.49 -2.38 -0.02 1.80 16 36 H 0.12 1.66 6.34 -2.39 -0.02 1.65 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.37 12.23 8.64 -74.06 -0.64 11.59 16 41 H 0.41 16.04 6.13 -92.71 -0.57 15.47 16 42 H 0.12 6.69 6.36 -2.91 -0.02 6.67 16 43 H 0.29 13.56 8.29 -92.71 -0.77 12.79 16 44 H 0.12 5.56 8.06 -2.91 -0.02 5.54 16 45 H 0.15 6.55 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -80.00 363.62 -0.50 -80.49 By element: Atomic # 1 Polarization: 57.72 SS G_CDS: -0.82 Total: 56.90 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 6.70 Total: 16.24 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -4.89 Total: -126.98 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: -3.52 Total: -66.51 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -80.00 -0.50 -80.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364163943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.694 kcal (2) G-P(sol) polarization free energy of solvation -79.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds