Wall clock time and date at job start Tue Mar 31 2020 14:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46884 * 2 1 4 4 O 1.42902 * 109.47216 * 119.99772 * 2 1 3 5 5 C 1.53002 * 109.47430 * 240.00176 * 2 1 3 6 6 N 1.46506 * 109.47144 * 180.02562 * 5 2 1 7 7 C 1.34774 * 119.99723 * 89.99562 * 6 5 2 8 8 O 1.21581 * 119.99564 * 184.46600 * 7 6 5 9 9 N 1.34769 * 120.00558 * 4.47534 * 7 6 5 10 10 C 1.39457 * 120.00183 * 173.73011 * 9 7 6 11 11 C 1.38643 * 119.64805 * 342.25653 * 10 9 7 12 12 C 1.40824 * 118.67365 * 179.72348 * 11 10 9 13 13 C 1.41544 * 120.99254 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00391 * 30.91608 * 13 12 11 15 15 C 1.40038 * 119.99567 * 210.91870 * 13 12 11 16 16 N 1.30737 * 119.99857 * 7.61006 * 15 13 12 17 17 Si 1.86797 * 119.99909 * 187.60922 * 15 13 12 18 18 H 1.48503 * 109.46860 * 89.99673 * 17 15 13 19 19 H 1.48496 * 109.47546 * 210.00064 * 17 15 13 20 20 H 1.48502 * 109.46920 * 330.00259 * 17 15 13 21 21 C 1.41164 * 118.00704 * 0.02562 * 12 11 10 22 22 C 1.36587 * 119.12604 * 0.02562 * 21 12 11 23 23 N 1.32067 * 121.26368 * 0.02562 * 22 21 12 24 24 C 1.46497 * 119.99760 * 269.99714 * 6 5 2 25 25 H 1.09007 * 109.47226 * 0.65653 * 24 6 5 26 26 C 1.53001 * 109.47020 * 120.65425 * 24 6 5 27 27 C 1.53003 * 109.47250 * 240.65412 * 24 6 5 28 28 O 1.42900 * 109.47035 * 65.32342 * 27 24 6 29 29 H 1.08999 * 109.46884 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47443 * 299.99635 * 1 2 3 31 31 H 1.08997 * 109.46840 * 60.00201 * 1 2 3 32 32 H 0.96699 * 114.00021 * 60.00695 * 4 2 1 33 33 H 1.08988 * 109.46961 * 59.99631 * 5 2 1 34 34 H 1.08999 * 109.46944 * 299.99787 * 5 2 1 35 35 H 0.96999 * 120.00076 * 353.71886 * 9 7 6 36 36 H 1.07997 * 120.66115 * 359.74764 * 11 10 9 37 37 H 0.97005 * 119.99822 * 180.02562 * 16 15 13 38 38 H 1.07993 * 120.43416 * 179.97438 * 21 12 11 39 39 H 1.08006 * 119.37161 * 179.97438 * 22 21 12 40 40 H 1.09001 * 109.47128 * 66.58398 * 26 24 6 41 41 H 1.08998 * 109.46945 * 186.59036 * 26 24 6 42 42 H 1.09004 * 109.47068 * 306.58090 * 26 24 6 43 43 H 1.09000 * 109.47223 * 185.32599 * 27 24 6 44 44 H 1.09004 * 109.46528 * 305.32445 * 27 24 6 45 45 H 0.96697 * 114.00373 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0401 -0.7212 -1.2493 6 7 3.5051 -0.7217 -1.2489 7 6 4.1785 -1.7328 -0.6652 8 8 5.3915 -1.6936 -0.5931 9 7 3.5073 -2.7874 -0.1617 10 6 4.2067 -3.8919 0.3238 11 6 5.5331 -4.0759 -0.0357 12 6 6.2215 -5.1950 0.4711 13 6 7.5763 -5.4307 0.1356 14 1 8.2361 -4.5990 -0.0627 15 6 8.0610 -6.7423 0.0608 16 7 7.2344 -7.7510 0.1531 17 14 9.8887 -7.0508 -0.1710 18 1 10.5466 -7.1475 1.1568 19 1 10.0861 -8.3207 -0.9150 20 1 10.4865 -5.9291 -0.9390 21 6 5.5196 -6.0753 1.3227 22 6 4.2128 -5.8119 1.6199 23 7 3.5975 -4.7528 1.1259 24 6 4.2381 0.3769 -1.8829 25 1 3.5301 1.1006 -2.2871 26 6 5.1300 1.0610 -0.8449 27 6 5.1054 -0.1755 -3.0158 28 8 4.2658 -0.7042 -4.0442 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7211 -1.5952 1.2329 33 1 1.6767 -0.2074 -2.1391 34 1 1.6768 -1.7489 -1.2493 35 1 2.5376 -2.7782 -0.1367 36 1 6.0285 -3.3747 -0.6909 37 1 7.5702 -8.6596 0.1017 38 1 6.0093 -6.9459 1.7331 39 1 3.6719 -6.4830 2.2707 40 1 5.9117 0.3712 -0.5264 41 1 5.5853 1.9480 -1.2852 42 1 4.5283 1.3510 0.0165 43 1 5.7213 0.6251 -3.4254 44 1 5.7479 -0.9665 -2.6289 45 1 4.7493 -1.0728 -4.7961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364163945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:22 Heat of formation + Delta-G solvation = -82.359676 kcal Electronic energy + Delta-G solvation = -28763.413289 eV Core-core repulsion = 24781.614312 eV Total energy + Delta-G solvation = -3981.798977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62268 -38.44789 -37.60656 -36.90111 -35.05680 -34.44187 -33.56196 -32.00490 -30.74367 -30.54014 -28.25998 -26.28863 -25.92936 -25.77501 -23.01153 -21.99529 -21.70807 -20.89534 -19.28790 -18.02756 -17.71046 -17.20616 -16.61883 -16.17522 -15.65912 -15.43575 -15.34776 -14.82648 -14.59931 -14.30182 -14.15017 -13.87090 -13.55319 -13.44061 -12.92016 -12.81930 -12.54186 -12.42136 -12.32558 -12.26265 -12.02587 -11.94171 -11.78353 -11.36716 -11.18259 -11.15615 -10.96750 -10.82937 -10.43622 -10.40661 -10.05490 -9.93110 -9.57549 -9.33296 -8.90548 -8.43717 -7.99494 -7.84187 -6.96517 -6.66160 -4.49477 2.72317 2.81121 2.87252 3.08951 3.13282 3.24895 3.73597 3.95285 4.03828 4.22789 4.26644 4.55194 4.76327 4.79299 4.94091 5.03107 5.11714 5.16767 5.34574 5.45471 5.48458 5.54342 5.65269 5.74168 5.77158 5.86569 5.90381 5.95624 6.00076 6.36132 6.57940 6.65647 6.81436 7.02356 7.11987 7.20268 7.29074 7.54142 7.56772 7.63053 7.64550 8.07288 8.14087 8.31252 8.63198 8.83793 8.89581 9.05479 9.59948 10.23334 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003939 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.722995 B = 7106.134748 C = 8378.542759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.079 3.921 3 H 0.100 0.900 4 O -0.552 6.552 5 C 0.080 3.920 6 N -0.614 5.614 7 C 0.720 3.280 8 O -0.559 6.559 9 N -0.660 5.660 10 C 0.351 3.649 11 C -0.267 4.267 12 C 0.140 3.860 13 C -0.454 4.454 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.800 5.800 17 Si 0.914 3.086 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.217 4.217 22 C 0.102 3.898 23 N -0.600 5.600 24 C 0.174 3.826 25 H 0.087 0.913 26 C -0.169 4.169 27 C 0.053 3.947 28 O -0.574 6.574 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.374 0.626 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.390 0.610 36 H 0.140 0.860 37 H 0.280 0.720 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 13.526 -5.411 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.019 3.981 3 H 0.118 0.882 4 O -0.358 6.358 5 C -0.045 4.045 6 N -0.351 5.351 7 C 0.422 3.578 8 O -0.435 6.435 9 N -0.308 5.308 10 C 0.126 3.874 11 C -0.293 4.293 12 C 0.132 3.868 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.142 4.142 16 N -0.427 5.427 17 Si 0.739 3.261 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.240 4.240 22 C -0.049 4.049 23 N -0.321 5.321 24 C 0.070 3.930 25 H 0.105 0.895 26 C -0.227 4.227 27 C -0.025 4.025 28 O -0.379 6.379 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.222 0.778 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.226 0.774 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.391 14.253 -4.656 17.692 hybrid contribution 1.120 -1.145 -0.877 1.827 sum -8.270 13.107 -5.533 16.457 Atomic orbital electron populations 1.22468 0.95936 1.02937 1.02934 1.22475 0.92870 0.97467 0.85321 0.88214 1.86689 1.77030 1.29006 1.43062 1.22321 0.81244 1.01791 0.99152 1.46950 1.05041 1.23334 1.59737 1.15530 0.85110 0.79090 0.78039 1.90803 1.11503 1.78579 1.62603 1.42353 1.09109 1.16160 1.63202 1.17673 0.89451 0.86734 0.93585 1.22361 0.93767 1.04334 1.08794 1.17808 0.93140 0.88955 0.86941 1.19574 0.94907 0.92599 1.41531 0.90155 1.25919 1.00043 0.95764 0.92497 1.69748 1.36263 1.00049 1.36605 0.86213 0.82135 0.78505 0.79263 1.19293 1.20295 1.18588 1.21936 0.95386 1.03761 1.02936 1.21349 0.92803 0.92964 0.97758 1.66540 1.40720 1.07704 1.17164 1.20818 0.93856 0.87068 0.91277 0.89506 1.22205 1.01406 1.00583 0.98511 1.22772 0.93008 0.98698 0.88066 1.86402 1.37414 1.81472 1.32624 0.91971 0.91470 0.91446 0.77821 0.89095 0.90609 0.77396 0.84301 0.90917 0.85666 0.85990 0.89326 0.92201 0.91941 0.93227 0.90769 0.77596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.53 37.16 0.35 -1.00 16 2 C 0.08 0.78 3.86 -26.73 -0.10 0.68 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 4 O -0.55 -7.30 12.18 -35.23 -0.43 -7.73 16 5 C 0.08 0.84 4.97 -4.04 -0.02 0.82 16 6 N -0.61 -8.61 2.33 -171.80 -0.40 -9.01 16 7 C 0.72 13.46 6.93 -86.93 -0.60 12.86 16 8 O -0.56 -12.25 9.43 5.29 0.05 -12.20 16 9 N -0.66 -12.65 4.73 -15.86 -0.08 -12.72 16 10 C 0.35 8.42 7.53 -154.67 -1.16 7.26 16 11 C -0.27 -7.11 8.62 -38.45 -0.33 -7.44 16 12 C 0.14 3.90 5.55 -106.55 -0.59 3.31 16 13 C -0.45 -12.47 9.12 -37.65 -0.34 -12.81 16 14 H 0.08 2.17 7.86 -52.49 -0.41 1.75 16 15 C 0.08 1.92 5.32 -17.34 -0.09 1.82 16 16 N -0.80 -20.82 10.89 55.55 0.61 -20.21 16 17 Si 0.91 19.07 29.57 -169.99 -5.03 14.04 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 21 C -0.22 -5.73 8.69 -39.07 -0.34 -6.07 16 22 C 0.10 2.47 11.10 -18.05 -0.20 2.27 16 23 N -0.60 -14.35 10.36 -12.75 -0.13 -14.48 16 24 C 0.17 2.16 2.94 -67.93 -0.20 1.96 16 25 H 0.09 0.88 7.80 -51.92 -0.41 0.47 16 26 C -0.17 -2.12 8.98 37.16 0.33 -1.79 16 27 C 0.05 0.68 6.35 37.16 0.24 0.92 16 28 O -0.57 -7.19 13.61 -35.23 -0.48 -7.67 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.37 4.51 7.53 45.56 0.34 4.85 16 33 H 0.09 0.80 7.93 -51.94 -0.41 0.38 16 34 H 0.08 0.80 6.28 -51.93 -0.33 0.47 16 35 H 0.39 6.23 5.09 -40.82 -0.21 6.03 16 36 H 0.14 3.78 5.31 -52.52 -0.28 3.50 16 37 H 0.28 6.62 8.29 -40.82 -0.34 6.28 16 38 H 0.13 3.35 6.38 -52.49 -0.34 3.02 16 39 H 0.12 2.56 8.06 -52.48 -0.42 2.13 16 40 H 0.09 1.42 6.21 -51.93 -0.32 1.09 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 1.20 6.24 -51.93 -0.32 0.88 16 45 H 0.38 3.34 9.12 45.56 0.42 3.76 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -32.93 363.01 -8.26 -41.20 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -4.78 Total: 20.53 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -3.06 Total: 2.79 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.00 Total: -56.43 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.86 Total: -27.59 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.93 -8.26 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364163945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.164 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds