Wall clock time and date at job start Tue Mar 31 2020 14:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46884 * 2 1 4 4 O 1.42902 * 109.47216 * 119.99772 * 2 1 3 5 5 C 1.53002 * 109.47430 * 240.00176 * 2 1 3 6 6 N 1.46506 * 109.47144 * 180.02562 * 5 2 1 7 7 C 1.34774 * 119.99723 * 89.99562 * 6 5 2 8 8 O 1.21581 * 119.99564 * 184.46600 * 7 6 5 9 9 N 1.34769 * 120.00558 * 4.47534 * 7 6 5 10 10 C 1.39457 * 120.00183 * 173.73011 * 9 7 6 11 11 C 1.38643 * 119.64805 * 342.25653 * 10 9 7 12 12 C 1.40824 * 118.67365 * 179.72348 * 11 10 9 13 13 C 1.41544 * 120.99254 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00391 * 30.91608 * 13 12 11 15 15 C 1.40038 * 119.99567 * 210.91870 * 13 12 11 16 16 N 1.30737 * 119.99857 * 7.61006 * 15 13 12 17 17 Si 1.86797 * 119.99909 * 187.60922 * 15 13 12 18 18 H 1.48503 * 109.46860 * 89.99673 * 17 15 13 19 19 H 1.48496 * 109.47546 * 210.00064 * 17 15 13 20 20 H 1.48502 * 109.46920 * 330.00259 * 17 15 13 21 21 C 1.41164 * 118.00704 * 0.02562 * 12 11 10 22 22 C 1.36587 * 119.12604 * 0.02562 * 21 12 11 23 23 N 1.32067 * 121.26368 * 0.02562 * 22 21 12 24 24 C 1.46497 * 119.99760 * 269.99714 * 6 5 2 25 25 H 1.09007 * 109.47226 * 0.65653 * 24 6 5 26 26 C 1.53001 * 109.47020 * 120.65425 * 24 6 5 27 27 C 1.53003 * 109.47250 * 240.65412 * 24 6 5 28 28 O 1.42900 * 109.47035 * 65.32342 * 27 24 6 29 29 H 1.08999 * 109.46884 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47443 * 299.99635 * 1 2 3 31 31 H 1.08997 * 109.46840 * 60.00201 * 1 2 3 32 32 H 0.96699 * 114.00021 * 60.00695 * 4 2 1 33 33 H 1.08988 * 109.46961 * 59.99631 * 5 2 1 34 34 H 1.08999 * 109.46944 * 299.99787 * 5 2 1 35 35 H 0.96999 * 120.00076 * 353.71886 * 9 7 6 36 36 H 1.07997 * 120.66115 * 359.74764 * 11 10 9 37 37 H 0.97005 * 119.99822 * 180.02562 * 16 15 13 38 38 H 1.07993 * 120.43416 * 179.97438 * 21 12 11 39 39 H 1.08006 * 119.37161 * 179.97438 * 22 21 12 40 40 H 1.09001 * 109.47128 * 66.58398 * 26 24 6 41 41 H 1.08998 * 109.46945 * 186.59036 * 26 24 6 42 42 H 1.09004 * 109.47068 * 306.58090 * 26 24 6 43 43 H 1.09000 * 109.47223 * 185.32599 * 27 24 6 44 44 H 1.09004 * 109.46528 * 305.32445 * 27 24 6 45 45 H 0.96697 * 114.00373 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0401 -0.7212 -1.2493 6 7 3.5051 -0.7217 -1.2489 7 6 4.1785 -1.7328 -0.6652 8 8 5.3915 -1.6936 -0.5931 9 7 3.5073 -2.7874 -0.1617 10 6 4.2067 -3.8919 0.3238 11 6 5.5331 -4.0759 -0.0357 12 6 6.2215 -5.1950 0.4711 13 6 7.5763 -5.4307 0.1356 14 1 8.2361 -4.5990 -0.0627 15 6 8.0610 -6.7423 0.0608 16 7 7.2344 -7.7510 0.1531 17 14 9.8887 -7.0508 -0.1710 18 1 10.5466 -7.1475 1.1568 19 1 10.0861 -8.3207 -0.9150 20 1 10.4865 -5.9291 -0.9390 21 6 5.5196 -6.0753 1.3227 22 6 4.2128 -5.8119 1.6199 23 7 3.5975 -4.7528 1.1259 24 6 4.2381 0.3769 -1.8829 25 1 3.5301 1.1006 -2.2871 26 6 5.1300 1.0610 -0.8449 27 6 5.1054 -0.1755 -3.0158 28 8 4.2658 -0.7042 -4.0442 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7211 -1.5952 1.2329 33 1 1.6767 -0.2074 -2.1391 34 1 1.6768 -1.7489 -1.2493 35 1 2.5376 -2.7782 -0.1367 36 1 6.0285 -3.3747 -0.6909 37 1 7.5702 -8.6596 0.1017 38 1 6.0093 -6.9459 1.7331 39 1 3.6719 -6.4830 2.2707 40 1 5.9117 0.3712 -0.5264 41 1 5.5853 1.9480 -1.2852 42 1 4.5283 1.3510 0.0165 43 1 5.7213 0.6251 -3.4254 44 1 5.7479 -0.9665 -2.6289 45 1 4.7493 -1.0728 -4.7961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364163945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:22 Heat of formation + Delta-G solvation = -107.987931 kcal Electronic energy + Delta-G solvation = -28764.524614 eV Core-core repulsion = 24781.614312 eV Total energy + Delta-G solvation = -3982.910302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.01759 -40.15468 -38.67614 -38.09558 -36.37837 -36.02922 -35.31192 -33.03181 -32.53320 -31.77794 -29.99144 -27.85657 -27.20690 -26.89814 -24.47542 -23.53265 -22.90807 -22.50115 -20.76089 -19.67623 -19.05152 -18.20621 -18.03362 -17.43626 -17.08822 -16.88914 -16.49990 -16.26127 -16.21726 -15.78525 -15.58500 -15.08944 -14.87445 -14.75071 -14.52772 -14.22539 -14.16889 -13.64738 -13.31608 -13.28650 -13.22356 -13.07154 -12.97137 -12.87648 -12.78304 -12.65775 -12.19390 -11.99683 -11.86396 -11.78036 -11.43609 -11.32561 -11.22747 -10.97813 -10.48413 -9.97819 -9.86656 -9.60547 -8.83533 -8.58332 -6.56747 0.88402 0.93734 1.37032 1.46050 1.50498 1.52949 2.18436 2.20869 2.75086 2.82129 3.25199 3.42925 3.72945 3.74712 3.93649 4.06767 4.15409 4.16699 4.24981 4.39927 4.43122 4.59050 4.65340 4.73731 4.74799 4.79533 4.83930 4.90284 4.96026 5.03757 5.09927 5.15588 5.25559 5.30563 5.35327 5.54424 5.63904 5.69292 5.85848 6.05600 6.24884 6.53926 6.66131 6.80268 6.80735 6.86157 6.88263 7.57351 7.65587 8.31696 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003939 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.722995 B = 7106.134748 C = 8378.542759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 H 0.103 0.897 4 O -0.579 6.579 5 C 0.074 3.926 6 N -0.603 5.603 7 C 0.712 3.288 8 O -0.595 6.595 9 N -0.651 5.651 10 C 0.360 3.640 11 C -0.297 4.297 12 C 0.113 3.887 13 C -0.492 4.492 14 H 0.069 0.931 15 C 0.038 3.962 16 N -0.823 5.823 17 Si 0.989 3.011 18 H -0.258 1.258 19 H -0.262 1.262 20 H -0.264 1.264 21 C -0.238 4.238 22 C 0.106 3.894 23 N -0.594 5.594 24 C 0.167 3.833 25 H 0.125 0.875 26 C -0.162 4.162 27 C 0.057 3.943 28 O -0.582 6.582 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.375 0.625 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.407 0.593 36 H 0.125 0.875 37 H 0.291 0.709 38 H 0.117 0.883 39 H 0.159 0.841 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.031 0.969 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.551 14.570 -6.353 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 H 0.121 0.879 4 O -0.385 6.385 5 C -0.049 4.049 6 N -0.339 5.339 7 C 0.414 3.586 8 O -0.474 6.474 9 N -0.301 5.301 10 C 0.132 3.868 11 C -0.322 4.322 12 C 0.105 3.895 13 C -0.524 4.524 14 H 0.087 0.913 15 C -0.177 4.177 16 N -0.449 5.449 17 Si 0.809 3.191 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.188 1.188 21 C -0.262 4.262 22 C -0.045 4.045 23 N -0.315 5.315 24 C 0.064 3.936 25 H 0.143 0.857 26 C -0.220 4.220 27 C -0.021 4.021 28 O -0.390 6.390 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.224 0.776 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.142 0.858 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.176 0.824 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.821 15.339 -5.630 19.598 hybrid contribution 1.445 -1.379 -0.636 2.096 sum -9.376 13.961 -6.266 17.947 Atomic orbital electron populations 1.22390 0.93593 1.03557 1.03897 1.22587 0.94607 0.96992 0.83723 0.87877 1.86672 1.77802 1.29335 1.44740 1.22629 0.78794 1.02535 1.00937 1.47032 1.06640 1.22098 1.58084 1.15828 0.84845 0.79770 0.78170 1.90794 1.13426 1.79404 1.63798 1.42186 1.09775 1.15141 1.62985 1.17832 0.89064 0.87426 0.92454 1.22369 0.95253 1.04512 1.10096 1.18184 0.93904 0.89867 0.87566 1.19765 0.95251 0.93603 1.43741 0.91323 1.26765 1.04905 0.94673 0.91407 1.69781 1.38385 1.00739 1.36031 0.85108 0.75714 0.78669 0.79608 1.18277 1.18585 1.18789 1.21903 0.96506 1.03821 1.03955 1.21872 0.92251 0.93132 0.97202 1.66757 1.40126 1.07651 1.17007 1.21118 0.94586 0.86994 0.90927 0.85746 1.22108 1.00326 1.00779 0.98744 1.22662 0.92887 0.98136 0.88463 1.86348 1.37896 1.81677 1.33074 0.91561 0.91689 0.89275 0.77631 0.86121 0.90562 0.75440 0.85784 0.89828 0.86537 0.82432 0.93394 0.89111 0.92269 0.90460 0.95064 0.75899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.53 71.98 0.69 -1.37 16 2 C 0.08 1.40 3.86 30.59 0.12 1.52 16 3 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 4 O -0.58 -14.74 12.18 -148.98 -1.82 -16.56 16 5 C 0.07 1.38 4.97 86.38 0.43 1.80 16 6 N -0.60 -16.29 2.33 -815.72 -1.90 -18.19 16 7 C 0.71 27.13 6.93 179.06 1.24 28.37 16 8 O -0.60 -27.60 9.43 -3.97 -0.04 -27.64 16 9 N -0.65 -25.20 4.73 -322.37 -1.52 -26.72 16 10 C 0.36 17.66 7.53 132.76 1.00 18.66 16 11 C -0.30 -16.62 8.62 23.00 0.20 -16.42 16 12 C 0.11 6.61 5.55 -21.11 -0.12 6.49 16 13 C -0.49 -28.39 9.12 23.52 0.21 -28.18 16 14 H 0.07 3.96 7.86 -2.91 -0.02 3.93 16 15 C 0.04 1.97 5.32 85.29 0.45 2.43 16 16 N -0.82 -43.49 10.89 21.84 0.24 -43.25 16 17 Si 0.99 39.50 29.57 68.60 2.03 41.52 16 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 C -0.24 -12.98 8.69 22.60 0.20 -12.78 16 22 C 0.11 5.15 11.10 84.27 0.94 6.09 16 23 N -0.59 -28.40 10.36 -194.26 -2.01 -30.41 16 24 C 0.17 3.85 2.94 44.99 0.13 3.99 16 25 H 0.12 2.01 7.80 -2.38 -0.02 1.99 16 26 C -0.16 -3.94 8.98 71.98 0.65 -3.30 16 27 C 0.06 1.42 6.35 71.98 0.46 1.88 16 28 O -0.58 -13.63 13.61 -148.98 -2.03 -15.66 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.38 8.77 7.53 -74.06 -0.56 8.21 16 33 H 0.12 1.60 7.93 -2.39 -0.02 1.58 16 34 H 0.08 1.43 6.28 -2.39 -0.01 1.42 16 35 H 0.41 12.74 5.09 -92.71 -0.47 12.27 16 36 H 0.12 7.26 5.31 -3.49 -0.02 7.25 16 37 H 0.29 13.75 8.29 -92.70 -0.77 12.98 16 38 H 0.12 6.44 6.38 -2.91 -0.02 6.42 16 39 H 0.16 6.37 8.06 -2.91 -0.02 6.34 16 40 H 0.05 1.59 6.21 -2.39 -0.01 1.58 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.03 1.06 6.24 -2.39 -0.01 1.05 16 45 H 0.39 6.48 9.12 -74.06 -0.68 5.80 16 Total: -1.00 -75.42 363.01 -1.11 -76.53 By element: Atomic # 1 Polarization: 51.86 SS G_CDS: -0.65 Total: 51.20 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 6.59 Total: 9.17 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -5.20 Total: -118.58 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -3.88 Total: -59.85 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.52 kcal Total: -75.42 -1.11 -76.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364163945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.457 kcal (2) G-P(sol) polarization free energy of solvation -75.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds