Wall clock time and date at job start Tue Mar 31 2020 13:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46798 * 2 1 4 4 N 1.46500 * 109.47182 * 119.99729 * 2 1 3 5 5 C 1.46500 * 119.99628 * 117.52413 * 4 2 1 6 6 C 1.52993 * 109.47530 * 272.70790 * 5 4 2 7 7 H 1.09001 * 109.47494 * 305.07446 * 6 5 4 8 8 O 1.42905 * 109.47266 * 65.07097 * 6 5 4 9 9 C 1.53001 * 109.47501 * 185.07145 * 6 5 4 10 10 O 1.42901 * 109.47252 * 175.00039 * 9 6 5 11 11 C 1.34776 * 120.00206 * 297.52611 * 4 2 1 12 12 O 1.21574 * 119.99538 * 185.24916 * 11 4 2 13 13 N 1.34775 * 119.99973 * 5.24858 * 11 4 2 14 14 C 1.39458 * 120.00222 * 174.95276 * 13 11 4 15 15 C 1.38634 * 119.65049 * 175.62019 * 14 13 11 16 16 C 1.40821 * 118.67333 * 180.27839 * 15 14 13 17 17 C 1.41552 * 120.99638 * 179.70797 * 16 15 14 18 18 H 1.07998 * 119.99871 * 26.75884 * 17 16 15 19 19 C 1.40029 * 119.99893 * 206.76168 * 17 16 15 20 20 N 1.30741 * 120.00114 * 10.24062 * 19 17 16 21 21 Si 1.86803 * 120.00031 * 190.24013 * 19 17 16 22 22 H 1.48503 * 109.46849 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46945 * 119.99759 * 21 19 17 24 24 H 1.48500 * 109.47063 * 240.00231 * 21 19 17 25 25 C 1.41159 * 118.00669 * 359.46519 * 16 15 14 26 26 C 1.36592 * 119.12417 * 0.52001 * 25 16 15 27 27 N 1.32061 * 121.25988 * 359.74278 * 26 25 16 28 28 H 1.08992 * 109.47183 * 304.89119 * 1 2 3 29 29 H 1.08994 * 109.47482 * 64.89383 * 1 2 3 30 30 H 1.09003 * 109.47129 * 184.89232 * 1 2 3 31 31 H 1.09001 * 109.46811 * 240.00232 * 2 1 3 32 32 H 1.09005 * 109.47056 * 189.13605 * 3 2 1 33 33 H 1.09002 * 109.47299 * 309.12996 * 3 2 1 34 34 H 1.08994 * 109.47491 * 69.13268 * 3 2 1 35 35 H 1.09003 * 109.47495 * 32.70987 * 5 4 2 36 36 H 1.09006 * 109.47117 * 152.70847 * 5 4 2 37 37 H 0.96700 * 113.99444 * 64.97018 * 8 6 5 38 38 H 1.09002 * 109.47319 * 295.00310 * 9 6 5 39 39 H 1.09002 * 109.46801 * 54.99800 * 9 6 5 40 40 H 0.96700 * 113.99695 * 179.97438 * 10 9 6 41 41 H 0.96999 * 120.00087 * 354.95627 * 13 11 4 42 42 H 1.07997 * 120.66361 * 0.02562 * 15 14 13 43 43 H 0.97001 * 120.00488 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.44038 * 180.28499 * 25 16 15 45 45 H 1.08003 * 119.36778 * 179.76446 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8153 -1.9125 1.0624 6 6 1.8833 -3.1233 0.9840 7 1 1.2203 -3.1282 1.8492 8 8 1.1049 -3.0486 -0.2121 9 6 2.7151 -4.4074 0.9717 10 8 1.8443 -5.5395 1.0159 11 6 1.7344 -0.2017 2.4197 12 8 2.2181 -0.7187 3.4080 13 7 0.9145 0.8602 2.5474 14 6 0.5366 1.3010 3.8154 15 6 -0.2323 2.4476 3.9421 16 6 -0.5972 2.8773 5.2325 17 6 -1.3760 4.0445 5.4191 18 1 -2.0482 4.3752 4.6411 19 6 -1.2749 4.7703 6.6123 20 7 -0.3259 4.4929 7.4678 21 14 -2.4959 6.1349 6.9818 22 1 -3.4649 6.2486 5.8622 23 1 -3.2249 5.8204 8.2367 24 1 -1.7689 7.4200 7.1403 25 6 -0.1674 2.1064 6.3341 26 6 0.5875 0.9902 6.1103 27 7 0.9161 0.6192 4.8862 28 1 -0.3633 0.5878 0.8429 29 1 -0.3634 0.4360 -0.9305 30 1 -0.3633 -1.0239 0.0876 31 1 1.8933 -0.5138 -0.8900 32 1 3.1177 1.4469 -0.1632 33 1 1.5496 2.0013 -0.7972 34 1 1.8159 1.9071 0.9602 35 1 3.4160 -1.8570 0.1546 36 1 3.4717 -2.0147 1.9267 37 1 1.6248 -3.1165 -1.0246 38 1 3.3131 -4.4442 0.0610 39 1 3.3741 -4.4216 1.8398 40 1 2.3044 -6.3900 1.0105 41 1 0.5871 1.3180 1.7574 42 1 -0.5418 3.0024 3.0687 43 1 -0.2561 4.9954 8.2945 44 1 -0.4287 2.3973 7.3408 45 1 0.9217 0.3996 6.9505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365251390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:04 Heat of formation + Delta-G solvation = -67.873505 kcal Electronic energy + Delta-G solvation = -28136.197501 eV Core-core repulsion = 24155.026691 eV Total energy + Delta-G solvation = -3981.170810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55758 -38.59054 -37.85916 -36.29086 -35.78651 -34.58984 -33.58968 -32.05845 -30.60894 -29.86499 -28.45582 -27.24952 -25.99497 -25.47275 -22.88675 -21.96647 -21.70139 -21.09888 -19.45252 -18.14825 -17.60805 -17.12468 -16.60535 -16.25606 -15.95491 -15.43896 -15.16182 -14.69577 -14.40098 -14.24920 -14.04929 -13.99755 -13.76833 -13.59842 -13.36865 -12.97754 -12.91115 -12.38457 -12.30853 -12.24443 -12.17595 -11.49287 -11.44025 -11.34839 -11.20955 -11.05084 -10.96693 -10.84140 -10.46623 -10.32069 -10.27322 -9.97677 -9.66400 -9.49454 -9.35578 -8.45643 -7.95875 -7.67860 -6.96647 -6.71985 -4.59054 2.74005 2.78833 2.83973 3.04418 3.09487 3.25794 3.75103 3.87179 3.94916 4.12303 4.29318 4.71833 4.74586 4.78165 4.87165 4.96108 4.98455 5.12292 5.17229 5.23137 5.49887 5.55518 5.66000 5.70082 5.73555 5.78725 5.92784 6.01067 6.08745 6.30831 6.49898 6.65604 6.71971 6.83224 6.95997 7.15526 7.23589 7.34592 7.47823 7.51638 7.59043 7.93325 8.09113 8.32255 8.52854 8.77728 8.79035 9.15154 9.77963 10.13855 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.002916 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.205375 B = 9598.558996 C =10261.107309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.141 3.859 3 C -0.186 4.186 4 N -0.625 5.625 5 C 0.109 3.891 6 C 0.090 3.910 7 H 0.110 0.890 8 O -0.546 6.546 9 C 0.047 3.953 10 O -0.563 6.563 11 C 0.698 3.302 12 O -0.531 6.531 13 N -0.672 5.672 14 C 0.362 3.638 15 C -0.306 4.306 16 C 0.148 3.852 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.791 5.791 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.222 4.222 26 C 0.104 3.896 27 N -0.551 5.551 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.365 0.635 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.377 0.623 41 H 0.407 0.593 42 H 0.099 0.901 43 H 0.281 0.719 44 H 0.129 0.871 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.716 -9.694 -15.742 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.037 3.963 3 C -0.245 4.245 4 N -0.364 5.364 5 C -0.015 4.015 6 C 0.029 3.971 7 H 0.128 0.872 8 O -0.349 6.349 9 C -0.032 4.032 10 O -0.368 6.368 11 C 0.399 3.601 12 O -0.402 6.402 13 N -0.327 5.327 14 C 0.133 3.867 15 C -0.332 4.332 16 C 0.140 3.860 17 C -0.487 4.487 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.417 5.417 21 Si 0.739 3.261 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.246 4.246 26 C -0.047 4.047 27 N -0.270 5.270 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.211 0.789 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.223 0.777 41 H 0.251 0.749 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.147 0.853 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.760 -10.252 -14.454 18.633 hybrid contribution -0.144 1.223 -0.463 1.315 sum 5.616 -9.030 -14.917 18.319 Atomic orbital electron populations 1.22487 0.94994 1.04090 1.02189 1.21011 0.94475 0.92688 0.88152 1.22545 1.02162 0.96299 1.03459 1.47228 1.57593 1.27062 1.04527 1.21769 0.92934 0.83425 1.03416 1.22493 0.94146 0.91001 0.89453 0.87241 1.86698 1.37325 1.96047 1.14872 1.22862 0.92564 0.87370 1.00384 1.86582 1.36494 1.16143 1.97584 1.16026 0.80147 0.80897 0.83045 1.90997 1.53370 1.60411 1.35429 1.43575 1.49552 1.31789 1.07755 1.17870 0.93733 0.90857 0.84253 1.21174 1.12586 1.01177 0.98308 1.17585 0.87903 0.90845 0.89695 1.19583 1.21217 1.07107 1.00838 0.90152 1.25954 0.94880 0.98336 0.95138 1.69768 1.26774 1.36571 1.08607 0.86163 0.80670 0.79941 0.79364 1.18386 1.19656 1.19904 1.22027 1.05177 0.96496 1.00866 1.21630 0.95669 0.94904 0.92481 1.67217 1.28615 1.33565 0.97625 0.91958 0.91491 0.90489 0.89228 0.91911 0.90916 0.91147 0.90605 0.88474 0.78948 0.93429 0.92358 0.77658 0.74939 0.88260 0.90763 0.85312 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.03 37.16 0.34 -1.70 16 2 C 0.14 1.51 2.73 -67.93 -0.19 1.32 16 3 C -0.19 -1.95 8.98 37.16 0.33 -1.62 16 4 N -0.62 -8.70 2.40 -171.81 -0.41 -9.11 16 5 C 0.11 1.22 5.14 -4.05 -0.02 1.20 16 6 C 0.09 1.03 3.50 -26.73 -0.09 0.93 16 7 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 8 O -0.55 -5.88 11.89 -40.08 -0.48 -6.35 16 9 C 0.05 0.41 6.64 37.16 0.25 0.66 16 10 O -0.56 -5.82 13.62 -40.08 -0.55 -6.37 16 11 C 0.70 13.59 7.58 -86.92 -0.66 12.93 16 12 O -0.53 -12.57 14.14 5.30 0.07 -12.50 16 13 N -0.67 -13.32 3.78 -15.87 -0.06 -13.38 16 14 C 0.36 8.84 7.41 -154.68 -1.15 7.70 16 15 C -0.31 -7.57 9.74 -38.46 -0.37 -7.94 16 16 C 0.15 3.97 5.59 -106.55 -0.60 3.37 16 17 C -0.46 -11.88 9.13 -37.65 -0.34 -12.22 16 18 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 19 C 0.08 1.86 5.30 -17.34 -0.09 1.77 16 20 N -0.79 -20.19 10.77 55.55 0.60 -19.59 16 21 Si 0.91 18.29 29.57 -169.99 -5.03 13.26 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 25 C -0.22 -5.91 8.72 -39.07 -0.34 -6.25 16 26 C 0.10 2.67 11.10 -18.05 -0.20 2.47 16 27 N -0.55 -14.57 7.88 -12.76 -0.10 -14.67 16 28 H 0.06 0.84 5.15 -51.93 -0.27 0.57 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.00 7.29 -51.93 -0.38 0.62 16 31 H 0.09 0.72 7.82 -51.93 -0.41 0.32 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 34 H 0.07 0.94 5.11 -51.93 -0.27 0.67 16 35 H 0.08 0.57 7.96 -51.93 -0.41 0.15 16 36 H 0.10 1.24 7.28 -51.93 -0.38 0.86 16 37 H 0.36 2.32 9.03 45.56 0.41 2.74 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.38 1.99 9.12 45.56 0.42 2.41 16 41 H 0.41 6.75 3.27 -40.82 -0.13 6.62 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.28 6.49 8.29 -40.82 -0.34 6.16 16 44 H 0.13 3.46 6.18 -52.49 -0.32 3.13 16 45 H 0.12 2.81 8.06 -52.48 -0.42 2.39 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -35.23 365.27 -8.25 -43.48 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -3.14 Total: 2.62 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.03 Total: -56.75 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.95 Total: -25.22 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.23 -8.25 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365251390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.392 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds