Wall clock time and date at job start Tue Mar 31 2020 13:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46798 * 2 1 4 4 N 1.46500 * 109.47182 * 119.99729 * 2 1 3 5 5 C 1.46500 * 119.99628 * 117.52413 * 4 2 1 6 6 C 1.52993 * 109.47530 * 272.70790 * 5 4 2 7 7 H 1.09001 * 109.47494 * 305.07446 * 6 5 4 8 8 O 1.42905 * 109.47266 * 65.07097 * 6 5 4 9 9 C 1.53001 * 109.47501 * 185.07145 * 6 5 4 10 10 O 1.42901 * 109.47252 * 175.00039 * 9 6 5 11 11 C 1.34776 * 120.00206 * 297.52611 * 4 2 1 12 12 O 1.21574 * 119.99538 * 185.24916 * 11 4 2 13 13 N 1.34775 * 119.99973 * 5.24858 * 11 4 2 14 14 C 1.39458 * 120.00222 * 174.95276 * 13 11 4 15 15 C 1.38634 * 119.65049 * 175.62019 * 14 13 11 16 16 C 1.40821 * 118.67333 * 180.27839 * 15 14 13 17 17 C 1.41552 * 120.99638 * 179.70797 * 16 15 14 18 18 H 1.07998 * 119.99871 * 26.75884 * 17 16 15 19 19 C 1.40029 * 119.99893 * 206.76168 * 17 16 15 20 20 N 1.30741 * 120.00114 * 10.24062 * 19 17 16 21 21 Si 1.86803 * 120.00031 * 190.24013 * 19 17 16 22 22 H 1.48503 * 109.46849 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46945 * 119.99759 * 21 19 17 24 24 H 1.48500 * 109.47063 * 240.00231 * 21 19 17 25 25 C 1.41159 * 118.00669 * 359.46519 * 16 15 14 26 26 C 1.36592 * 119.12417 * 0.52001 * 25 16 15 27 27 N 1.32061 * 121.25988 * 359.74278 * 26 25 16 28 28 H 1.08992 * 109.47183 * 304.89119 * 1 2 3 29 29 H 1.08994 * 109.47482 * 64.89383 * 1 2 3 30 30 H 1.09003 * 109.47129 * 184.89232 * 1 2 3 31 31 H 1.09001 * 109.46811 * 240.00232 * 2 1 3 32 32 H 1.09005 * 109.47056 * 189.13605 * 3 2 1 33 33 H 1.09002 * 109.47299 * 309.12996 * 3 2 1 34 34 H 1.08994 * 109.47491 * 69.13268 * 3 2 1 35 35 H 1.09003 * 109.47495 * 32.70987 * 5 4 2 36 36 H 1.09006 * 109.47117 * 152.70847 * 5 4 2 37 37 H 0.96700 * 113.99444 * 64.97018 * 8 6 5 38 38 H 1.09002 * 109.47319 * 295.00310 * 9 6 5 39 39 H 1.09002 * 109.46801 * 54.99800 * 9 6 5 40 40 H 0.96700 * 113.99695 * 179.97438 * 10 9 6 41 41 H 0.96999 * 120.00087 * 354.95627 * 13 11 4 42 42 H 1.07997 * 120.66361 * 0.02562 * 15 14 13 43 43 H 0.97001 * 120.00488 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.44038 * 180.28499 * 25 16 15 45 45 H 1.08003 * 119.36778 * 179.76446 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8153 -1.9125 1.0624 6 6 1.8833 -3.1233 0.9840 7 1 1.2203 -3.1282 1.8492 8 8 1.1049 -3.0486 -0.2121 9 6 2.7151 -4.4074 0.9717 10 8 1.8443 -5.5395 1.0159 11 6 1.7344 -0.2017 2.4197 12 8 2.2181 -0.7187 3.4080 13 7 0.9145 0.8602 2.5474 14 6 0.5366 1.3010 3.8154 15 6 -0.2323 2.4476 3.9421 16 6 -0.5972 2.8773 5.2325 17 6 -1.3760 4.0445 5.4191 18 1 -2.0482 4.3752 4.6411 19 6 -1.2749 4.7703 6.6123 20 7 -0.3259 4.4929 7.4678 21 14 -2.4959 6.1349 6.9818 22 1 -3.4649 6.2486 5.8622 23 1 -3.2249 5.8204 8.2367 24 1 -1.7689 7.4200 7.1403 25 6 -0.1674 2.1064 6.3341 26 6 0.5875 0.9902 6.1103 27 7 0.9161 0.6192 4.8862 28 1 -0.3633 0.5878 0.8429 29 1 -0.3634 0.4360 -0.9305 30 1 -0.3633 -1.0239 0.0876 31 1 1.8933 -0.5138 -0.8900 32 1 3.1177 1.4469 -0.1632 33 1 1.5496 2.0013 -0.7972 34 1 1.8159 1.9071 0.9602 35 1 3.4160 -1.8570 0.1546 36 1 3.4717 -2.0147 1.9267 37 1 1.6248 -3.1165 -1.0246 38 1 3.3131 -4.4442 0.0610 39 1 3.3741 -4.4216 1.8398 40 1 2.3044 -6.3900 1.0105 41 1 0.5871 1.3180 1.7574 42 1 -0.5418 3.0024 3.0687 43 1 -0.2561 4.9954 8.2945 44 1 -0.4287 2.3973 7.3408 45 1 0.9217 0.3996 6.9505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365251390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:03 Heat of formation + Delta-G solvation = -95.092936 kcal Electronic energy + Delta-G solvation = -28137.377824 eV Core-core repulsion = 24155.026691 eV Total energy + Delta-G solvation = -3982.351133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.95485 -40.15291 -39.01872 -37.47155 -36.74016 -36.26673 -35.29617 -33.14299 -32.58623 -30.96683 -30.12918 -28.12335 -27.93482 -26.52134 -24.16410 -23.72029 -22.73363 -22.68108 -20.97681 -19.80298 -18.65655 -18.12289 -17.94951 -17.36873 -17.16361 -16.81999 -16.57424 -16.20974 -16.02966 -15.83085 -15.53706 -15.23594 -14.81120 -14.72355 -14.53790 -14.34410 -14.20015 -14.02467 -13.69169 -13.18091 -13.14791 -13.09496 -12.88666 -12.85226 -12.43724 -12.29671 -12.08523 -11.94347 -11.82839 -11.77499 -11.45700 -11.26600 -11.20202 -11.12158 -10.98534 -9.96497 -9.63451 -9.62112 -8.83077 -8.59852 -6.59419 0.81617 0.98131 1.40672 1.55244 1.56051 1.58141 2.19856 2.25831 2.75684 2.83845 3.21646 3.51513 3.74861 3.82736 3.96966 4.04684 4.09545 4.12794 4.28254 4.30516 4.39617 4.55298 4.61567 4.64381 4.73404 4.79827 4.82050 4.88289 4.89670 4.92280 5.02107 5.05583 5.23278 5.25288 5.38416 5.49009 5.60963 5.67156 5.86304 5.95366 6.22941 6.52608 6.77869 6.81968 6.87262 6.87885 6.94926 7.58509 7.88943 8.28925 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.002916 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.205375 B = 9598.558996 C =10261.107309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.137 3.863 3 C -0.183 4.183 4 N -0.614 5.614 5 C 0.107 3.893 6 C 0.098 3.902 7 H 0.052 0.948 8 O -0.558 6.558 9 C 0.051 3.949 10 O -0.592 6.592 11 C 0.690 3.310 12 O -0.582 6.582 13 N -0.662 5.662 14 C 0.360 3.640 15 C -0.317 4.317 16 C 0.121 3.879 17 C -0.481 4.481 18 H 0.087 0.913 19 C 0.034 3.966 20 N -0.820 5.820 21 Si 0.994 3.006 22 H -0.254 1.254 23 H -0.265 1.265 24 H -0.265 1.265 25 C -0.241 4.241 26 C 0.097 3.903 27 N -0.577 5.577 28 H 0.035 0.965 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.036 0.964 35 H 0.129 0.871 36 H 0.077 0.923 37 H 0.387 0.613 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.397 0.603 41 H 0.422 0.578 42 H 0.119 0.881 43 H 0.291 0.709 44 H 0.120 0.880 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 -9.165 -18.735 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.035 3.965 3 C -0.241 4.241 4 N -0.351 5.351 5 C -0.017 4.017 6 C 0.037 3.963 7 H 0.071 0.929 8 O -0.365 6.365 9 C -0.027 4.027 10 O -0.401 6.401 11 C 0.392 3.608 12 O -0.457 6.457 13 N -0.319 5.319 14 C 0.130 3.870 15 C -0.343 4.343 16 C 0.113 3.887 17 C -0.512 4.512 18 H 0.105 0.895 19 C -0.183 4.183 20 N -0.446 5.446 21 Si 0.814 3.186 22 H -0.177 1.177 23 H -0.189 1.189 24 H -0.190 1.190 25 C -0.265 4.265 26 C -0.054 4.054 27 N -0.297 5.297 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.055 0.945 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.237 0.763 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.247 0.753 41 H 0.268 0.732 42 H 0.137 0.863 43 H 0.102 0.898 44 H 0.138 0.862 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.042 -9.759 -17.552 20.972 hybrid contribution -0.187 0.991 0.357 1.070 sum 5.855 -8.768 -17.195 20.170 Atomic orbital electron populations 1.22454 0.95547 1.02681 1.02662 1.21368 0.94032 0.93224 0.87921 1.22533 1.03136 0.95928 1.02542 1.47328 1.56734 1.27542 1.03504 1.22033 0.92625 0.82010 1.05005 1.22149 0.93197 0.92791 0.88126 0.92948 1.86657 1.38161 1.96132 1.15594 1.22842 0.91850 0.85622 1.02422 1.86517 1.38140 1.17688 1.97750 1.16334 0.79707 0.80438 0.84363 1.90953 1.55206 1.61729 1.37822 1.43552 1.49511 1.32209 1.06650 1.18169 0.92909 0.90542 0.85417 1.21345 1.12873 1.01653 0.98423 1.17993 0.88545 0.91591 0.90567 1.19901 1.21723 1.07389 1.02194 0.89498 1.26921 0.96410 1.00687 0.94242 1.69828 1.27969 1.37659 1.09139 0.84984 0.77906 0.76442 0.79311 1.17731 1.18923 1.18972 1.21980 1.06633 0.97311 1.00558 1.21909 0.95391 0.94919 0.93142 1.67331 1.29678 1.34489 0.98231 0.94630 0.88259 0.92238 0.84901 0.90967 0.88094 0.94481 0.85321 0.90466 0.76320 0.89249 0.92427 0.75267 0.73154 0.86328 0.89789 0.86249 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.65 9.03 71.98 0.65 -2.99 16 2 C 0.14 2.52 2.73 44.99 0.12 2.65 16 3 C -0.18 -3.32 8.98 71.98 0.65 -2.68 16 4 N -0.61 -16.45 2.40 -815.74 -1.96 -18.40 16 5 C 0.11 2.19 5.14 86.38 0.44 2.64 16 6 C 0.10 2.17 3.50 30.59 0.11 2.28 16 7 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 8 O -0.56 -10.75 11.89 -144.34 -1.72 -12.46 16 9 C 0.05 0.80 6.64 71.98 0.48 1.28 16 10 O -0.59 -11.55 13.62 -144.34 -1.97 -13.52 16 11 C 0.69 27.58 7.58 179.06 1.36 28.93 16 12 O -0.58 -28.86 14.14 -3.95 -0.06 -28.92 16 13 N -0.66 -26.98 3.78 -322.38 -1.22 -28.20 16 14 C 0.36 18.25 7.41 132.76 0.98 19.23 16 15 C -0.32 -16.16 9.74 23.00 0.22 -15.93 16 16 C 0.12 6.73 5.59 -21.11 -0.12 6.62 16 17 C -0.48 -25.50 9.13 23.52 0.21 -25.28 16 18 H 0.09 4.34 7.87 -2.91 -0.02 4.31 16 19 C 0.03 1.66 5.30 85.29 0.45 2.11 16 20 N -0.82 -42.48 10.77 21.84 0.24 -42.25 16 21 Si 0.99 37.00 29.57 68.60 2.03 39.03 16 22 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 23 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 24 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 25 C -0.24 -13.42 8.72 22.60 0.20 -13.22 16 26 C 0.10 5.24 11.10 84.27 0.94 6.18 16 27 N -0.58 -31.96 7.88 -194.28 -1.53 -33.49 16 28 H 0.03 0.93 5.15 -2.39 -0.01 0.92 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.47 7.29 -2.39 -0.02 1.45 16 31 H 0.13 1.41 7.82 -2.39 -0.02 1.39 16 32 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.10 1.27 8.12 -2.39 -0.02 1.25 16 34 H 0.04 0.94 5.11 -2.39 -0.01 0.93 16 35 H 0.13 1.30 7.96 -2.39 -0.02 1.29 16 36 H 0.08 1.95 7.28 -2.38 -0.02 1.93 16 37 H 0.39 3.29 9.03 -74.06 -0.67 2.62 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.40 3.58 9.12 -74.06 -0.68 2.91 16 41 H 0.42 14.12 3.27 -92.71 -0.30 13.81 16 42 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 43 H 0.29 13.51 8.29 -92.71 -0.77 12.74 16 44 H 0.12 6.74 6.18 -2.91 -0.02 6.72 16 45 H 0.14 6.66 8.06 -2.91 -0.02 6.64 16 Total: -1.00 -82.18 365.27 -0.08 -82.26 By element: Atomic # 1 Polarization: 44.75 SS G_CDS: -0.60 Total: 44.15 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.69 Total: 11.80 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -4.47 Total: -122.34 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -3.74 Total: -54.90 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -82.18 -0.08 -82.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365251390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.831 kcal (2) G-P(sol) polarization free energy of solvation -82.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds