Wall clock time and date at job start Tue Mar 31 2020 13:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47221 * 2 1 4 4 N 1.46508 * 109.46941 * 120.00102 * 2 1 3 5 5 C 1.46497 * 120.00156 * 114.11537 * 4 2 1 6 6 C 1.53000 * 109.46760 * 89.99857 * 5 4 2 7 7 H 1.09003 * 109.47386 * 60.00364 * 6 5 4 8 8 O 1.42901 * 109.47406 * 299.99793 * 6 5 4 9 9 C 1.53002 * 109.46837 * 180.02562 * 6 5 4 10 10 O 1.42904 * 109.47240 * 185.00130 * 9 6 5 11 11 C 1.34773 * 119.99649 * 294.11969 * 4 2 1 12 12 O 1.21581 * 119.99998 * 184.72207 * 11 4 2 13 13 N 1.34780 * 120.00143 * 4.71439 * 11 4 2 14 14 C 1.39462 * 120.00068 * 185.80523 * 13 11 4 15 15 C 1.38645 * 119.64320 * 17.56186 * 14 13 11 16 16 C 1.40822 * 118.67004 * 179.97438 * 15 14 13 17 17 C 1.41545 * 120.99884 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99928 * 32.34191 * 17 16 15 19 19 C 1.40033 * 120.00157 * 212.34719 * 17 16 15 20 20 N 1.30741 * 119.99641 * 6.53114 * 19 17 16 21 21 Si 1.86802 * 120.00103 * 186.52977 * 19 17 16 22 22 H 1.48498 * 109.46776 * 59.99865 * 21 19 17 23 23 H 1.48495 * 109.47162 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47297 * 300.00205 * 21 19 17 25 25 C 1.41162 * 118.00730 * 0.02562 * 16 15 14 26 26 C 1.36592 * 119.12740 * 0.02562 * 25 16 15 27 27 N 1.32071 * 121.25572 * 359.72435 * 26 25 16 28 28 H 1.08999 * 109.46886 * 304.90264 * 1 2 3 29 29 H 1.09003 * 109.46904 * 64.90254 * 1 2 3 30 30 H 1.09004 * 109.47263 * 184.89786 * 1 2 3 31 31 H 1.09009 * 109.47133 * 239.99524 * 2 1 3 32 32 H 1.09003 * 109.47204 * 174.38632 * 3 2 1 33 33 H 1.08999 * 109.47335 * 294.38709 * 3 2 1 34 34 H 1.09000 * 109.47346 * 54.39111 * 3 2 1 35 35 H 1.09003 * 109.47256 * 330.00290 * 5 4 2 36 36 H 1.08999 * 109.47317 * 209.99843 * 5 4 2 37 37 H 0.96698 * 114.00040 * 300.00390 * 8 6 5 38 38 H 1.09008 * 109.47244 * 304.99825 * 9 6 5 39 39 H 1.08998 * 109.47676 * 65.00093 * 9 6 5 40 40 H 0.96702 * 113.99924 * 179.97438 * 10 9 6 41 41 H 0.97004 * 119.99979 * 5.81401 * 13 11 4 42 42 H 1.07992 * 120.66866 * 0.02562 * 15 14 13 43 43 H 0.97006 * 119.99998 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.43837 * 179.97438 * 25 16 15 45 45 H 1.08000 * 119.37381 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7512 -1.9524 1.0657 6 6 4.2476 -1.6618 0.9349 7 1 4.5936 -1.1308 1.8218 8 8 4.4770 -0.8558 -0.2226 9 6 5.0130 -2.9795 0.7980 10 8 6.4176 -2.7163 0.7929 11 6 1.7932 -0.1652 2.4167 12 8 2.2713 -0.6917 3.4028 13 7 1.0382 0.9440 2.5441 14 6 0.9044 1.5572 3.7895 15 6 1.8092 1.2648 4.7986 16 6 1.6551 1.8961 6.0479 17 6 2.5500 1.6334 7.1127 18 1 3.5854 1.4073 6.9046 19 6 2.0929 1.6666 8.4359 20 7 0.8175 1.8132 8.6834 21 14 3.3053 1.5015 9.8474 22 1 4.2948 2.6068 9.7817 23 1 2.5743 1.5682 11.1382 24 1 4.0108 0.1988 9.7441 25 6 0.5808 2.7979 6.2070 26 6 -0.2606 3.0218 5.1546 27 7 -0.0835 2.4157 3.9946 28 1 -0.3633 0.5880 0.8428 29 1 -0.3633 0.4359 -0.9307 30 1 -0.3634 -1.0239 0.0877 31 1 1.8934 -0.5139 -0.8900 32 1 3.1254 1.4440 0.1005 33 1 1.7611 1.9264 -0.9360 34 1 1.5970 1.9845 0.8355 35 1 2.4054 -2.4834 0.1788 36 1 2.5763 -2.5672 1.9486 37 1 4.1927 -1.2666 -1.0505 38 1 4.7684 -3.6307 1.6373 39 1 4.7315 -3.4680 -0.1349 40 1 6.9659 -3.5084 0.7091 41 1 0.5878 1.3157 1.7696 42 1 2.6164 0.5675 4.6297 43 1 0.5008 1.8359 9.6000 44 1 0.4257 3.3035 7.1486 45 1 -1.0841 3.7106 5.2720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365251392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:07 Heat of formation + Delta-G solvation = -68.445045 kcal Electronic energy + Delta-G solvation = -28393.373297 eV Core-core repulsion = 24412.177703 eV Total energy + Delta-G solvation = -3981.195593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73869 -38.61309 -37.84108 -36.44916 -35.84346 -34.56385 -33.55460 -32.10359 -30.53221 -29.94885 -28.44266 -27.29213 -25.85302 -25.52686 -22.93099 -21.99598 -21.74542 -20.95455 -19.70859 -18.13010 -17.59458 -17.15324 -16.63044 -16.24050 -15.95098 -15.46690 -15.28289 -14.70333 -14.57174 -14.31876 -14.14856 -14.06500 -13.75385 -13.48612 -13.31768 -12.89527 -12.88220 -12.42722 -12.31289 -12.27244 -12.22160 -11.55155 -11.44555 -11.31826 -11.15976 -11.08796 -11.00282 -10.89774 -10.45286 -10.40776 -10.25815 -10.01917 -9.69282 -9.25744 -9.06162 -8.57234 -7.99747 -7.80875 -6.93916 -6.65254 -4.47727 2.64612 2.82001 2.88385 3.10235 3.14280 3.26010 3.63388 3.89562 3.98380 4.06804 4.28770 4.69252 4.76126 4.78684 4.88942 4.92006 4.95651 5.06143 5.16105 5.22038 5.45613 5.50690 5.59809 5.66905 5.73979 5.77542 5.89999 5.96827 6.10178 6.27409 6.45259 6.65125 6.74025 7.02958 7.11270 7.18661 7.29712 7.37661 7.52953 7.55936 7.64289 8.06106 8.13971 8.30037 8.63704 8.83875 8.90536 9.01215 9.59809 10.26773 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.003866 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.044352 B = 7241.250843 C = 9026.724412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.140 3.860 3 C -0.182 4.182 4 N -0.619 5.619 5 C 0.109 3.891 6 C 0.089 3.911 7 H 0.114 0.886 8 O -0.544 6.544 9 C 0.048 3.952 10 O -0.562 6.562 11 C 0.708 3.292 12 O -0.558 6.558 13 N -0.665 5.665 14 C 0.345 3.655 15 C -0.267 4.267 16 C 0.140 3.860 17 C -0.454 4.454 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.801 5.801 21 Si 0.915 3.085 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.215 4.215 26 C 0.102 3.898 27 N -0.601 5.601 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.363 0.637 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.377 0.623 41 H 0.403 0.597 42 H 0.141 0.859 43 H 0.280 0.720 44 H 0.125 0.875 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 -8.160 -17.693 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.036 3.964 3 C -0.240 4.240 4 N -0.357 5.357 5 C -0.015 4.015 6 C 0.028 3.972 7 H 0.132 0.868 8 O -0.347 6.347 9 C -0.031 4.031 10 O -0.367 6.367 11 C 0.410 3.590 12 O -0.434 6.434 13 N -0.319 5.319 14 C 0.119 3.881 15 C -0.292 4.292 16 C 0.132 3.868 17 C -0.486 4.486 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.428 5.428 21 Si 0.740 3.260 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.239 4.239 26 C -0.049 4.049 27 N -0.321 5.321 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.209 0.791 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.223 0.777 41 H 0.246 0.754 42 H 0.158 0.842 43 H 0.091 0.909 44 H 0.143 0.857 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.349 -7.313 -16.989 18.645 hybrid contribution 0.573 -1.176 0.576 1.429 sum 2.922 -8.489 -16.414 18.709 Atomic orbital electron populations 1.22506 0.95468 1.03015 1.02937 1.21070 0.93459 0.93961 0.87932 1.22493 1.03483 0.95293 1.02750 1.47112 1.59307 1.24795 1.04500 1.21814 0.90563 0.85589 1.03565 1.22489 0.93132 0.91088 0.90502 0.86826 1.86726 1.86108 1.45924 1.15968 1.22846 0.82449 0.97651 1.00167 1.86591 1.16475 1.36494 1.97107 1.15745 0.79760 0.80391 0.83117 1.90886 1.54913 1.62022 1.35559 1.43169 1.50657 1.27457 1.10636 1.17749 0.92603 0.93382 0.84318 1.22418 1.04300 1.07596 0.94935 1.17811 0.91003 0.86810 0.91205 1.19507 0.97098 1.42103 0.89928 0.90278 1.25905 0.95623 0.92324 1.00324 1.69739 1.14373 1.36365 1.22275 0.86255 0.80724 0.79982 0.79062 1.18853 1.20341 1.18955 1.21932 0.99992 1.02391 0.99556 1.21362 0.97932 0.97464 0.88158 1.66548 1.23086 1.16062 1.26450 0.91553 0.90944 0.91818 0.89092 0.90678 0.91350 0.91312 0.90337 0.88574 0.79121 0.92417 0.93532 0.77697 0.75370 0.84167 0.90869 0.85705 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.11 37.16 0.34 -1.44 16 2 C 0.14 1.43 2.71 -67.93 -0.18 1.25 16 3 C -0.18 -2.08 8.89 37.15 0.33 -1.75 16 4 N -0.62 -8.36 2.34 -171.80 -0.40 -8.76 16 5 C 0.11 1.18 5.02 -4.04 -0.02 1.16 16 6 C 0.09 1.02 3.52 -26.73 -0.09 0.93 16 7 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 8 O -0.54 -6.04 12.42 -40.11 -0.50 -6.54 16 9 C 0.05 0.42 6.68 37.16 0.25 0.67 16 10 O -0.56 -5.97 13.62 -40.11 -0.55 -6.51 16 11 C 0.71 13.53 7.53 -86.92 -0.65 12.87 16 12 O -0.56 -12.88 12.74 5.29 0.07 -12.81 16 13 N -0.66 -13.21 3.98 -15.86 -0.06 -13.28 16 14 C 0.35 8.51 7.53 -154.68 -1.16 7.35 16 15 C -0.27 -7.28 8.63 -38.45 -0.33 -7.61 16 16 C 0.14 3.97 5.54 -106.55 -0.59 3.38 16 17 C -0.45 -12.69 9.11 -37.65 -0.34 -13.03 16 18 H 0.08 2.15 7.86 -52.49 -0.41 1.74 16 19 C 0.08 1.97 5.33 -17.34 -0.09 1.87 16 20 N -0.80 -21.28 10.94 55.55 0.61 -20.68 16 21 Si 0.92 19.43 29.57 -169.99 -5.03 14.41 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.22 -5.76 8.68 -39.07 -0.34 -6.10 16 26 C 0.10 2.50 11.10 -18.04 -0.20 2.30 16 27 N -0.60 -14.77 10.36 -12.76 -0.13 -14.90 16 28 H 0.07 0.82 5.33 -51.93 -0.28 0.55 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.67 7.75 -51.92 -0.40 0.27 16 32 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.96 5.02 -51.93 -0.26 0.70 16 35 H 0.08 0.54 7.97 -51.93 -0.41 0.13 16 36 H 0.10 1.17 7.49 -51.93 -0.39 0.78 16 37 H 0.36 2.39 9.04 45.56 0.41 2.80 16 38 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.38 2.10 9.12 45.56 0.42 2.51 16 41 H 0.40 6.85 3.18 -40.82 -0.13 6.72 16 42 H 0.14 3.94 5.27 -52.58 -0.28 3.66 16 43 H 0.28 6.79 8.29 -40.82 -0.34 6.45 16 44 H 0.13 3.37 6.46 -52.48 -0.34 3.03 16 45 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -35.29 364.39 -8.18 -43.47 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -4.58 Total: 18.26 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -3.10 Total: 1.85 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.01 Total: -57.61 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.98 Total: -25.87 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.29 -8.18 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365251392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.972 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds