Wall clock time and date at job start Tue Mar 31 2020 13:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47221 * 2 1 4 4 N 1.46508 * 109.46941 * 120.00102 * 2 1 3 5 5 C 1.46497 * 120.00156 * 114.11537 * 4 2 1 6 6 C 1.53000 * 109.46760 * 89.99857 * 5 4 2 7 7 H 1.09003 * 109.47386 * 60.00364 * 6 5 4 8 8 O 1.42901 * 109.47406 * 299.99793 * 6 5 4 9 9 C 1.53002 * 109.46837 * 180.02562 * 6 5 4 10 10 O 1.42904 * 109.47240 * 185.00130 * 9 6 5 11 11 C 1.34773 * 119.99649 * 294.11969 * 4 2 1 12 12 O 1.21581 * 119.99998 * 184.72207 * 11 4 2 13 13 N 1.34780 * 120.00143 * 4.71439 * 11 4 2 14 14 C 1.39462 * 120.00068 * 185.80523 * 13 11 4 15 15 C 1.38645 * 119.64320 * 17.56186 * 14 13 11 16 16 C 1.40822 * 118.67004 * 179.97438 * 15 14 13 17 17 C 1.41545 * 120.99884 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99928 * 32.34191 * 17 16 15 19 19 C 1.40033 * 120.00157 * 212.34719 * 17 16 15 20 20 N 1.30741 * 119.99641 * 6.53114 * 19 17 16 21 21 Si 1.86802 * 120.00103 * 186.52977 * 19 17 16 22 22 H 1.48498 * 109.46776 * 59.99865 * 21 19 17 23 23 H 1.48495 * 109.47162 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47297 * 300.00205 * 21 19 17 25 25 C 1.41162 * 118.00730 * 0.02562 * 16 15 14 26 26 C 1.36592 * 119.12740 * 0.02562 * 25 16 15 27 27 N 1.32071 * 121.25572 * 359.72435 * 26 25 16 28 28 H 1.08999 * 109.46886 * 304.90264 * 1 2 3 29 29 H 1.09003 * 109.46904 * 64.90254 * 1 2 3 30 30 H 1.09004 * 109.47263 * 184.89786 * 1 2 3 31 31 H 1.09009 * 109.47133 * 239.99524 * 2 1 3 32 32 H 1.09003 * 109.47204 * 174.38632 * 3 2 1 33 33 H 1.08999 * 109.47335 * 294.38709 * 3 2 1 34 34 H 1.09000 * 109.47346 * 54.39111 * 3 2 1 35 35 H 1.09003 * 109.47256 * 330.00290 * 5 4 2 36 36 H 1.08999 * 109.47317 * 209.99843 * 5 4 2 37 37 H 0.96698 * 114.00040 * 300.00390 * 8 6 5 38 38 H 1.09008 * 109.47244 * 304.99825 * 9 6 5 39 39 H 1.08998 * 109.47676 * 65.00093 * 9 6 5 40 40 H 0.96702 * 113.99924 * 179.97438 * 10 9 6 41 41 H 0.97004 * 119.99979 * 5.81401 * 13 11 4 42 42 H 1.07992 * 120.66866 * 0.02562 * 15 14 13 43 43 H 0.97006 * 119.99998 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.43837 * 179.97438 * 25 16 15 45 45 H 1.08000 * 119.37381 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7512 -1.9524 1.0657 6 6 4.2476 -1.6618 0.9349 7 1 4.5936 -1.1308 1.8218 8 8 4.4770 -0.8558 -0.2226 9 6 5.0130 -2.9795 0.7980 10 8 6.4176 -2.7163 0.7929 11 6 1.7932 -0.1652 2.4167 12 8 2.2713 -0.6917 3.4028 13 7 1.0382 0.9440 2.5441 14 6 0.9044 1.5572 3.7895 15 6 1.8092 1.2648 4.7986 16 6 1.6551 1.8961 6.0479 17 6 2.5500 1.6334 7.1127 18 1 3.5854 1.4073 6.9046 19 6 2.0929 1.6666 8.4359 20 7 0.8175 1.8132 8.6834 21 14 3.3053 1.5015 9.8474 22 1 4.2948 2.6068 9.7817 23 1 2.5743 1.5682 11.1382 24 1 4.0108 0.1988 9.7441 25 6 0.5808 2.7979 6.2070 26 6 -0.2606 3.0218 5.1546 27 7 -0.0835 2.4157 3.9946 28 1 -0.3633 0.5880 0.8428 29 1 -0.3633 0.4359 -0.9307 30 1 -0.3634 -1.0239 0.0877 31 1 1.8934 -0.5139 -0.8900 32 1 3.1254 1.4440 0.1005 33 1 1.7611 1.9264 -0.9360 34 1 1.5970 1.9845 0.8355 35 1 2.4054 -2.4834 0.1788 36 1 2.5763 -2.5672 1.9486 37 1 4.1927 -1.2666 -1.0505 38 1 4.7684 -3.6307 1.6373 39 1 4.7315 -3.4680 -0.1349 40 1 6.9659 -3.5084 0.7091 41 1 0.5878 1.3157 1.7696 42 1 2.6164 0.5675 4.6297 43 1 0.5008 1.8359 9.6000 44 1 0.4257 3.3035 7.1486 45 1 -1.0841 3.7106 5.2720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365251392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:06 Heat of formation + Delta-G solvation = -96.777502 kcal Electronic energy + Delta-G solvation = -28394.601884 eV Core-core repulsion = 24412.177703 eV Total energy + Delta-G solvation = -3982.424181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15961 -40.18316 -39.05089 -37.65485 -36.78941 -36.27490 -35.30488 -33.19613 -32.57104 -31.05990 -30.14072 -28.14682 -27.89163 -26.57863 -24.22834 -23.74076 -22.73631 -22.67510 -21.20605 -19.81136 -18.71884 -18.18446 -17.96229 -17.54052 -17.00388 -16.93950 -16.70832 -16.30878 -16.18452 -15.91423 -15.60684 -15.21904 -14.80244 -14.69284 -14.52799 -14.40826 -14.21158 -14.08224 -13.66803 -13.22523 -13.18524 -13.10949 -12.97555 -12.88939 -12.47343 -12.34055 -12.29098 -12.01058 -11.91627 -11.83432 -11.50374 -11.21708 -11.14929 -10.97833 -10.84291 -10.03524 -9.88656 -9.71700 -8.83994 -8.62653 -6.59709 0.81776 0.90658 1.35424 1.44216 1.48525 1.50942 2.06482 2.19310 2.69412 2.78164 3.20159 3.51184 3.69120 3.80754 3.95912 4.05462 4.10212 4.12758 4.24790 4.27747 4.37714 4.54027 4.61922 4.65347 4.72347 4.75739 4.79656 4.88183 4.90824 5.00822 5.04519 5.10085 5.22547 5.22888 5.33474 5.45732 5.58174 5.65088 5.84941 6.01619 6.20340 6.50120 6.75961 6.80252 6.84083 6.88566 6.95427 7.47655 7.60750 8.30773 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.003866 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.044352 B = 7241.250843 C = 9026.724412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.135 3.865 3 C -0.178 4.178 4 N -0.606 5.606 5 C 0.106 3.894 6 C 0.095 3.905 7 H 0.053 0.947 8 O -0.559 6.559 9 C 0.052 3.948 10 O -0.593 6.593 11 C 0.699 3.301 12 O -0.606 6.606 13 N -0.656 5.656 14 C 0.352 3.648 15 C -0.299 4.299 16 C 0.113 3.887 17 C -0.494 4.494 18 H 0.069 0.931 19 C 0.037 3.963 20 N -0.825 5.825 21 Si 0.991 3.009 22 H -0.257 1.257 23 H -0.259 1.259 24 H -0.265 1.265 25 C -0.236 4.236 26 C 0.107 3.893 27 N -0.598 5.598 28 H 0.035 0.965 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.387 0.613 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.397 0.603 41 H 0.418 0.582 42 H 0.123 0.877 43 H 0.291 0.709 44 H 0.118 0.882 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 -9.197 -20.109 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.033 3.967 3 C -0.236 4.236 4 N -0.342 5.342 5 C -0.017 4.017 6 C 0.034 3.966 7 H 0.072 0.928 8 O -0.366 6.366 9 C -0.027 4.027 10 O -0.401 6.401 11 C 0.401 3.599 12 O -0.486 6.486 13 N -0.313 5.313 14 C 0.125 3.875 15 C -0.325 4.325 16 C 0.105 3.895 17 C -0.525 4.525 18 H 0.088 0.912 19 C -0.179 4.179 20 N -0.451 5.451 21 Si 0.811 3.189 22 H -0.181 1.181 23 H -0.183 1.183 24 H -0.190 1.190 25 C -0.259 4.259 26 C -0.044 4.044 27 N -0.319 5.319 28 H 0.053 0.947 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.247 0.753 41 H 0.265 0.735 42 H 0.141 0.859 43 H 0.102 0.898 44 H 0.136 0.864 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.793 -8.379 -19.514 21.313 hybrid contribution 0.731 -0.874 1.145 1.616 sum 2.524 -9.254 -18.369 20.722 Atomic orbital electron populations 1.22485 0.94597 1.03157 1.03216 1.21464 0.94091 0.93405 0.87756 1.22458 1.01844 0.96193 1.03147 1.47263 1.58226 1.25286 1.03405 1.22099 0.89987 0.84308 1.05282 1.22176 0.93804 0.91732 0.88889 0.92828 1.86685 1.86456 1.46596 1.16880 1.22842 0.81483 0.95940 1.02425 1.86528 1.17660 1.38638 1.97309 1.16129 0.79275 0.80009 0.84504 1.90849 1.56451 1.63280 1.37978 1.43140 1.51055 1.27617 1.09440 1.17944 0.91445 0.92573 0.85547 1.22405 1.05349 1.08629 0.96086 1.18195 0.91971 0.87453 0.91880 1.19742 0.96932 1.44281 0.91537 0.91238 1.26796 0.97642 0.91145 1.02270 1.69777 1.15919 1.35800 1.23627 0.85134 0.78177 0.79880 0.75741 1.18084 1.18285 1.19001 1.21905 1.00752 1.03108 1.00135 1.21910 0.98004 0.97076 0.87419 1.66773 1.22707 1.16083 1.26307 0.94664 0.87696 0.91123 0.84386 0.92742 0.87979 0.94413 0.84585 0.90450 0.76420 0.92250 0.89224 0.75322 0.73525 0.85942 0.89787 0.86386 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.11 71.98 0.66 -2.24 16 2 C 0.13 2.36 2.71 44.99 0.12 2.48 16 3 C -0.18 -3.78 8.89 71.98 0.64 -3.14 16 4 N -0.61 -15.82 2.34 -815.71 -1.91 -17.73 16 5 C 0.11 2.12 5.02 86.38 0.43 2.55 16 6 C 0.09 2.15 3.52 30.59 0.11 2.25 16 7 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 8 O -0.56 -11.36 12.42 -144.32 -1.79 -13.15 16 9 C 0.05 0.82 6.68 71.98 0.48 1.30 16 10 O -0.59 -12.06 13.62 -144.32 -1.97 -14.03 16 11 C 0.70 27.74 7.53 179.05 1.35 29.09 16 12 O -0.61 -30.02 12.74 -3.97 -0.05 -30.07 16 13 N -0.66 -26.93 3.98 -322.37 -1.28 -28.21 16 14 C 0.35 18.10 7.53 132.76 1.00 19.10 16 15 C -0.30 -17.41 8.63 23.00 0.20 -17.21 16 16 C 0.11 6.80 5.54 -21.11 -0.12 6.68 16 17 C -0.49 -29.15 9.11 23.52 0.21 -28.93 16 18 H 0.07 4.06 7.86 -2.91 -0.02 4.04 16 19 C 0.04 1.96 5.33 85.29 0.45 2.41 16 20 N -0.82 -44.75 10.94 21.84 0.24 -44.51 16 21 Si 0.99 40.47 29.57 68.60 2.03 42.50 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 C -0.24 -13.08 8.68 22.60 0.20 -12.88 16 26 C 0.11 5.30 11.10 84.27 0.94 6.24 16 27 N -0.60 -29.79 10.36 -194.27 -2.01 -31.80 16 28 H 0.03 0.82 5.33 -2.39 -0.01 0.80 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.14 1.24 7.75 -2.38 -0.02 1.22 16 32 H 0.05 1.39 8.00 -2.39 -0.02 1.37 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.04 5.02 -2.39 -0.01 1.03 16 35 H 0.14 1.18 7.97 -2.39 -0.02 1.16 16 36 H 0.08 1.88 7.49 -2.39 -0.02 1.87 16 37 H 0.39 3.47 9.04 -74.06 -0.67 2.80 16 38 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.40 3.88 9.12 -74.06 -0.68 3.21 16 41 H 0.42 14.32 3.18 -92.71 -0.30 14.03 16 42 H 0.12 7.51 5.27 -4.34 -0.02 7.49 16 43 H 0.29 14.16 8.29 -92.70 -0.77 13.39 16 44 H 0.12 6.60 6.46 -2.91 -0.02 6.59 16 45 H 0.16 6.60 8.06 -2.91 -0.02 6.58 16 Total: -1.00 -84.58 364.39 -0.67 -85.25 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: -0.59 Total: 44.06 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.67 Total: 7.70 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -4.97 Total: -122.25 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -3.81 Total: -57.25 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -84.58 -0.67 -85.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365251392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.527 kcal (2) G-P(sol) polarization free energy of solvation -84.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds