Wall clock time and date at job start Tue Mar 31 2020 14:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46609 * 2 1 4 4 C 1.35960 * 119.61082 * 90.00172 * 3 2 1 5 5 C 1.35259 * 120.82003 * 180.27210 * 4 3 2 6 6 C 1.40216 * 120.02908 * 359.50195 * 5 4 3 7 7 C 1.36794 * 119.23915 * 0.49074 * 6 5 4 8 8 N 1.40213 * 120.39795 * 179.77899 * 7 6 5 9 9 C 1.34776 * 120.00235 * 238.42132 * 8 7 6 10 10 O 1.21601 * 119.99551 * 5.09379 * 9 8 7 11 11 N 1.34771 * 120.00372 * 185.08521 * 9 8 7 12 12 C 1.46498 * 120.00000 * 0.02562 * 11 9 8 13 13 C 1.50696 * 109.47657 * 89.99711 * 12 11 9 14 14 H 1.07999 * 120.00023 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00103 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00025 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00245 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47154 * 89.99957 * 17 15 13 19 19 H 1.48495 * 109.47231 * 210.00208 * 17 15 13 20 20 H 1.48504 * 109.46954 * 330.00220 * 17 15 13 21 21 C 1.46498 * 120.00127 * 180.02562 * 11 9 8 22 22 C 1.53003 * 109.47228 * 90.00575 * 21 11 9 23 23 O 1.42899 * 109.47174 * 64.99721 * 22 21 11 24 24 C 1.42903 * 114.00085 * 180.02562 * 23 22 21 25 25 C 1.34672 * 119.61652 * 270.02258 * 3 2 1 26 26 O 1.22060 * 120.02818 * 359.97438 * 25 3 2 27 27 H 1.09001 * 109.46887 * 60.00156 * 1 2 3 28 28 H 1.09002 * 109.46442 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47222 * 299.99849 * 1 2 3 30 30 H 1.09003 * 109.47215 * 240.00619 * 2 1 3 31 31 H 1.08993 * 109.47144 * 119.99860 * 2 1 3 32 32 H 1.07998 * 119.59002 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.98377 * 179.72245 * 5 4 3 34 34 H 1.08001 * 120.38022 * 180.23178 * 6 5 4 35 35 H 0.97001 * 119.99944 * 58.42687 * 8 7 6 36 36 H 1.09001 * 109.47329 * 209.99751 * 12 11 9 37 37 H 1.09007 * 109.47056 * 329.99059 * 12 11 9 38 38 H 0.96998 * 120.00143 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.47097 * 210.00426 * 21 11 9 40 40 H 1.08994 * 109.47243 * 330.00460 * 21 11 9 41 41 H 1.08997 * 109.47374 * 185.00079 * 22 21 11 42 42 H 1.08999 * 109.46692 * 305.00227 * 22 21 11 43 43 H 1.08990 * 109.46851 * 300.00328 * 24 23 22 44 44 H 1.09005 * 109.46914 * 60.00214 * 24 23 22 45 45 H 1.08997 * 109.47041 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2422 2.0147 1.1820 5 6 2.6876 3.2915 1.2106 6 6 2.9344 3.9756 0.0117 7 6 2.7097 3.3401 -1.1786 8 7 2.9439 4.0027 -2.3919 9 6 1.9427 4.1539 -3.2814 10 8 0.8156 3.7989 -2.9943 11 7 2.1906 4.6986 -4.4889 12 6 3.5484 5.1259 -4.8350 13 6 4.2863 3.9813 -5.4802 14 1 3.7932 3.0304 -5.6183 15 6 5.5912 4.1476 -5.8932 16 7 6.2353 3.1485 -6.4559 17 14 6.4443 5.7920 -5.6537 18 1 7.1217 5.8104 -4.3324 19 1 7.4500 5.9891 -6.7284 20 1 5.4393 6.8839 -5.7099 21 6 1.1021 4.8635 -5.4555 22 6 0.4470 6.2319 -5.2574 23 8 1.3887 7.2605 -5.5694 24 6 0.8749 8.5851 -5.4157 25 6 2.2396 2.0090 -1.1708 26 8 2.0341 1.4274 -2.2240 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.0583 1.4932 2.1097 33 1 2.8567 3.7831 2.1572 34 1 3.2937 4.9939 0.0279 35 1 3.8265 4.3522 -2.5911 36 1 3.4996 5.9644 -5.5298 37 1 4.0740 5.4335 -3.9309 38 1 7.1531 3.2656 -6.7468 39 1 1.5014 4.7949 -6.4675 40 1 0.3598 4.0800 -5.3039 41 1 -0.4178 6.3194 -5.9151 42 1 0.1269 6.3347 -4.2206 43 1 0.0188 8.7215 -6.0764 44 1 0.5639 8.7364 -4.3820 45 1 1.6502 9.3074 -5.6709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365949288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:13 Heat of formation + Delta-G solvation = -83.630576 kcal Electronic energy + Delta-G solvation = -28602.914707 eV Core-core repulsion = 24621.060619 eV Total energy + Delta-G solvation = -3981.854087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46769 -41.00996 -38.84516 -37.89336 -37.06529 -36.53940 -34.61676 -34.50173 -31.72845 -31.24236 -30.07954 -29.12720 -27.10810 -25.69725 -24.92409 -24.38431 -23.42612 -22.94844 -21.02749 -19.38194 -19.10267 -18.62122 -18.30603 -17.71547 -17.33079 -17.11532 -16.81425 -16.53578 -16.23362 -15.97827 -15.78159 -15.35307 -15.27152 -15.07508 -14.84988 -14.42711 -14.04255 -13.87883 -13.57564 -13.44697 -13.30225 -13.18424 -12.97439 -12.79023 -12.74615 -12.62763 -12.49975 -12.13815 -12.06914 -11.94833 -11.71443 -11.58810 -11.17565 -10.91520 -10.79144 -10.58936 -10.22643 -9.39750 -8.61821 -8.30412 -6.38869 -0.10770 1.01595 1.37214 1.40996 1.52469 1.54579 1.96102 2.31294 2.34695 2.73110 2.90347 3.02037 3.08686 3.68616 3.92161 4.02651 4.11351 4.12359 4.15836 4.20376 4.35566 4.40092 4.45804 4.52670 4.55150 4.58897 4.61500 4.66500 4.83695 4.88066 4.89069 4.94920 4.98623 5.13083 5.18077 5.31937 5.42978 5.57321 5.68054 5.85484 6.03170 6.18421 6.23248 6.30273 6.65394 6.97996 7.10158 7.27358 7.69696 8.87204 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.004554 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.341882 B = 6146.928953 C = 7271.257200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.084 3.916 3 N -0.494 5.494 4 C 0.132 3.868 5 C -0.218 4.218 6 C -0.017 4.017 7 C -0.013 4.013 8 N -0.671 5.671 9 C 0.712 3.288 10 O -0.629 6.629 11 N -0.608 5.608 12 C 0.233 3.767 13 C -0.543 4.543 14 H 0.014 0.986 15 C 0.014 3.986 16 N -0.946 5.946 17 Si 0.950 3.050 18 H -0.255 1.255 19 H -0.282 1.282 20 H -0.239 1.239 21 C 0.134 3.866 22 C 0.063 3.937 23 O -0.409 6.409 24 C 0.027 3.973 25 C 0.493 3.507 26 O -0.593 6.593 27 H 0.016 0.984 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.146 0.854 32 H 0.222 0.778 33 H 0.197 0.803 34 H 0.156 0.844 35 H 0.409 0.591 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.269 0.731 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 5.201 20.673 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.037 4.037 3 N -0.205 5.205 4 C 0.006 3.994 5 C -0.240 4.240 6 C -0.042 4.042 7 C -0.111 4.111 8 N -0.323 5.323 9 C 0.414 3.586 10 O -0.511 6.511 11 N -0.342 5.342 12 C 0.111 3.889 13 C -0.582 4.582 14 H 0.032 0.968 15 C -0.184 4.184 16 N -0.586 5.586 17 Si 0.772 3.228 18 H -0.180 1.180 19 H -0.207 1.207 20 H -0.162 1.162 21 C 0.010 3.990 22 C -0.015 4.015 23 O -0.328 6.328 24 C -0.069 4.069 25 C 0.294 3.706 26 O -0.478 6.478 27 H 0.035 0.965 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.239 0.761 33 H 0.214 0.786 34 H 0.174 0.826 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.377 4.439 19.982 22.515 hybrid contribution 0.790 0.194 -1.088 1.358 sum -8.588 4.632 18.894 21.265 Atomic orbital electron populations 1.22065 0.93882 1.04015 1.01745 1.22179 0.96176 0.79663 1.05656 1.45686 1.52959 1.15496 1.06363 1.22951 0.92541 0.94356 0.89522 1.21022 1.09289 0.94677 0.99033 1.21898 0.91743 1.00153 0.90381 1.18290 1.13640 0.92077 0.87054 1.42169 1.12853 1.60059 1.17201 1.15919 0.84067 0.77660 0.80915 1.90746 1.22528 1.58518 1.79276 1.46979 1.10620 1.63751 1.12803 1.19438 0.78726 0.94793 0.95976 1.21571 0.98246 0.97799 1.40561 0.96790 1.25926 0.97576 1.01254 0.93617 1.70099 1.12235 1.34328 1.41942 0.85679 0.78898 0.79250 0.79012 1.17963 1.20744 1.16196 1.21341 0.89275 0.95931 0.92449 1.22863 0.91902 0.87106 0.99618 1.87949 1.39783 1.15607 1.89466 1.22906 1.00529 0.83004 1.00503 1.17583 0.81016 0.88134 0.83852 1.90952 1.56303 1.68478 1.32063 0.96459 0.88499 0.89764 0.91843 0.83598 0.76145 0.78612 0.82639 0.75196 0.92685 0.94948 0.92250 0.90203 0.90320 0.89859 0.93999 0.92566 0.93872 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.24 71.98 0.74 -2.44 16 2 C 0.08 1.75 6.05 86.38 0.52 2.28 16 3 N -0.49 -13.08 2.59 -650.19 -1.68 -14.77 16 4 C 0.13 1.93 10.28 83.37 0.86 2.79 16 5 C -0.22 -3.26 10.00 22.06 0.22 -3.04 16 6 C -0.02 -0.43 10.01 22.41 0.22 -0.21 16 7 C -0.01 -0.50 5.71 38.18 0.22 -0.29 16 8 N -0.67 -30.07 5.07 -316.70 -1.61 -31.67 16 9 C 0.71 35.74 7.60 179.06 1.36 37.10 16 10 O -0.63 -34.18 14.87 8.66 0.13 -34.06 16 11 N -0.61 -29.45 2.42 -844.19 -2.04 -31.49 16 12 C 0.23 11.53 3.86 85.63 0.33 11.86 16 13 C -0.54 -32.74 9.94 25.60 0.25 -32.49 16 14 H 0.01 0.99 8.06 -2.91 -0.02 0.96 16 15 C 0.01 0.85 5.47 84.65 0.46 1.31 16 16 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 17 Si 0.95 42.84 27.47 68.60 1.88 44.73 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 21 C 0.13 5.69 5.81 86.38 0.50 6.19 16 22 C 0.06 2.13 6.28 71.98 0.45 2.58 16 23 O -0.41 -14.05 9.53 -148.98 -1.42 -15.47 16 24 C 0.03 0.64 11.01 113.37 1.25 1.88 16 25 C 0.49 20.32 6.97 84.98 0.59 20.91 16 26 O -0.59 -31.91 15.13 7.18 0.11 -31.80 16 27 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.81 7.39 -2.39 -0.02 1.79 16 31 H 0.15 1.35 8.01 -2.39 -0.02 1.33 16 32 H 0.22 0.42 8.04 -2.91 -0.02 0.39 16 33 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.41 17.67 6.52 -92.71 -0.60 17.06 16 36 H 0.06 2.68 6.17 -2.39 -0.01 2.66 16 37 H 0.03 1.49 5.72 -2.38 -0.01 1.48 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.08 3.44 8.07 -2.38 -0.02 3.42 16 40 H 0.08 3.45 7.42 -2.39 -0.02 3.43 16 41 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -98.99 375.98 3.99 -95.00 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.34 Total: 31.43 kcal Atomic # 6 Polarization: 40.46 SS G_CDS: 7.98 Total: 48.44 kcal Atomic # 7 Polarization: -133.24 SS G_CDS: -5.03 Total: -138.27 kcal Atomic # 8 Polarization: -80.15 SS G_CDS: -1.18 Total: -81.33 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.73 kcal Total: -98.99 3.99 -95.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365949288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.371 kcal (2) G-P(sol) polarization free energy of solvation -98.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds