Wall clock time and date at job start Tue Mar 31 2020 13:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47251 * 2 1 4 4 O 1.42897 * 109.47521 * 120.00468 * 2 1 3 5 5 C 1.35494 * 117.00257 * 89.99601 * 4 2 1 6 6 C 1.39166 * 119.52763 * 180.02562 * 5 4 2 7 7 C 1.37955 * 119.26416 * 179.97438 * 6 5 4 8 8 C 1.40278 * 118.36178 * 0.02562 * 7 6 5 9 9 C 1.47614 * 120.50514 * 179.97438 * 8 7 6 10 10 O 1.21587 * 119.99368 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00532 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00405 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47387 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47113 * 60.00542 * 13 12 11 15 15 O 1.42895 * 109.47271 * 300.00096 * 13 12 11 16 16 C 1.53005 * 109.47192 * 180.02562 * 13 12 11 17 17 N 1.46500 * 109.47009 * 185.00210 * 16 13 12 18 18 C 1.36938 * 120.00257 * 179.97438 * 17 16 13 19 19 H 1.08008 * 119.99518 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00482 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99733 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00280 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47172 * 59.99637 * 22 20 18 24 24 H 1.48492 * 109.47283 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47007 * 300.00022 * 22 20 18 26 26 C 1.39531 * 118.99845 * 0.02562 * 8 7 6 27 27 N 1.31662 * 120.62701 * 359.97438 * 26 8 7 28 28 H 1.08999 * 109.47517 * 60.00266 * 1 2 3 29 29 H 1.09005 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46900 * 299.99633 * 1 2 3 31 31 H 1.09011 * 109.47016 * 240.00369 * 2 1 3 32 32 H 1.08996 * 109.47333 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47051 * 300.00522 * 3 2 1 34 34 H 1.08998 * 109.46516 * 60.00031 * 3 2 1 35 35 H 1.08000 * 120.36870 * 359.96208 * 6 5 4 36 36 H 1.08002 * 120.82085 * 179.72833 * 7 6 5 37 37 H 0.96997 * 119.99705 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47118 * 300.00572 * 12 11 9 39 39 H 1.09007 * 109.47046 * 60.00254 * 12 11 9 40 40 H 0.96696 * 114.00232 * 300.00186 * 15 13 12 41 41 H 1.09004 * 109.46588 * 304.99815 * 16 13 12 42 42 H 1.08990 * 109.47157 * 64.99820 * 16 13 12 43 43 H 0.97008 * 120.00219 * 0.02562 * 17 16 13 44 44 H 0.97001 * 119.99920 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.68362 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2114 -2.0092 1.0652 6 6 2.6744 -2.7179 2.1698 7 6 2.8808 -4.0775 2.0607 8 6 2.6137 -4.6954 0.8299 9 6 2.8185 -6.1474 0.6604 10 8 3.2211 -6.8173 1.5917 11 7 2.5591 -6.7305 -0.5267 12 6 2.7629 -8.1714 -0.6951 13 6 2.3981 -8.5744 -2.1252 14 1 3.0317 -8.0333 -2.8280 15 8 1.0280 -8.2546 -2.3754 16 6 2.6103 -10.0794 -2.3009 17 7 2.3762 -10.4456 -3.6999 18 6 2.5087 -11.7491 -4.0980 19 1 2.7863 -12.5072 -3.3805 20 6 2.2863 -12.0961 -5.4234 21 7 1.9476 -11.1723 -6.2976 22 14 2.4665 -13.8745 -5.9662 23 1 1.5117 -14.7225 -5.2083 24 1 2.1767 -13.9804 -7.4187 25 1 3.8537 -14.3343 -5.7029 26 6 2.1525 -3.9165 -0.2319 27 7 1.9694 -2.6211 -0.0837 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.8702 -2.2090 3.1021 36 1 3.2437 -4.6513 2.9006 37 1 2.2382 -6.1960 -1.2697 38 1 3.8081 -8.4152 -0.5046 39 1 2.1296 -8.7125 0.0080 40 1 0.4057 -8.7016 -1.7855 41 1 3.6327 -10.3368 -2.0242 42 1 1.9135 -10.6216 -1.6619 43 1 2.1279 -9.7645 -4.3446 44 1 1.7925 -11.4148 -7.2239 45 1 1.9437 -4.3807 -1.1845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496992935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:44 Heat of formation + Delta-G solvation = -81.451673 kcal Electronic energy + Delta-G solvation = -26150.382254 eV Core-core repulsion = 22168.622651 eV Total energy + Delta-G solvation = -3981.759603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.25262 -39.84882 -38.40472 -37.56503 -34.55264 -34.05639 -33.72158 -32.90668 -31.48878 -30.88287 -28.91693 -27.70739 -25.74581 -24.43757 -24.23892 -22.59955 -21.53608 -21.49072 -20.70502 -19.01489 -18.15681 -17.39320 -17.15553 -16.28379 -16.16459 -15.99347 -15.52368 -15.19889 -14.84690 -14.83120 -14.53125 -14.46695 -14.06146 -13.71410 -13.54960 -13.39587 -13.07844 -12.96857 -12.82363 -12.75455 -12.67278 -12.39690 -12.29690 -11.89084 -11.38452 -11.20373 -10.98328 -10.81535 -10.66545 -10.46163 -10.36980 -10.22429 -9.90845 -9.81797 -9.53984 -9.25789 -8.92369 -8.88584 -6.96030 -5.77769 -3.07623 0.37358 0.79671 2.53298 2.63808 2.96721 3.43309 3.47603 3.48786 3.50292 3.74432 4.37714 4.39725 4.47062 4.52518 4.53342 4.60018 4.66962 4.72548 4.81741 4.85508 5.11687 5.17236 5.20017 5.25577 5.30394 5.36441 5.48134 5.53859 5.58638 5.64809 5.68837 5.75762 5.79928 5.91657 5.95571 6.15961 6.29902 6.48590 6.64246 6.79566 7.31555 7.35662 7.66431 7.88951 8.04320 8.40336 9.51929 10.08119 10.43702 11.44478 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.001939 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.996011 B =14437.453865 C =15448.478081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.298 6.298 5 C 0.345 3.655 6 C -0.200 4.200 7 C 0.018 3.982 8 C -0.226 4.226 9 C 0.566 3.434 10 O -0.541 6.541 11 N -0.716 5.716 12 C 0.090 3.910 13 C 0.088 3.912 14 H 0.106 0.894 15 O -0.553 6.553 16 C 0.127 3.873 17 N -0.726 5.726 18 C -0.245 4.245 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.182 3.818 27 N -0.542 5.542 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.404 0.596 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.374 0.626 41 H 0.029 0.971 42 H 0.024 0.976 43 H 0.388 0.612 44 H 0.256 0.744 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.722 24.617 16.321 29.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.208 4.208 4 O -0.205 6.205 5 C 0.167 3.833 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.232 4.232 9 C 0.352 3.648 10 O -0.419 6.419 11 N -0.367 5.367 12 C -0.034 4.034 13 C 0.028 3.972 14 H 0.124 0.876 15 O -0.358 6.358 16 C -0.001 4.001 17 N -0.370 5.370 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.024 3.976 27 N -0.266 5.266 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.240 0.760 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.221 0.779 41 H 0.047 0.953 42 H 0.041 0.959 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.413 25.024 16.016 29.713 hybrid contribution -0.140 -1.410 -0.021 1.417 sum -0.553 23.614 15.994 28.526 Atomic orbital electron populations 1.22222 0.94581 1.03085 1.02766 1.22446 0.94624 0.92881 0.87789 1.21917 1.02050 0.93712 1.03137 1.86276 1.79322 1.15801 1.39078 1.20071 0.88932 0.84757 0.89586 1.21056 1.07592 0.94011 0.99386 1.21529 0.89736 0.92896 0.96626 1.20813 1.10617 0.95071 0.96730 1.17880 0.77626 0.86448 0.82804 1.90790 1.46286 1.64716 1.40151 1.45813 1.67583 1.10023 1.13321 1.22146 1.02815 0.79995 0.98476 1.22417 0.83869 0.97397 0.93488 0.87640 1.86572 1.15599 1.71526 1.62085 1.21197 0.98603 0.90930 0.89416 1.42225 1.83742 1.07658 1.03419 1.19173 1.39852 0.85387 0.93200 0.91243 1.24763 1.02265 0.97687 0.96120 1.69665 1.53433 1.31856 1.02873 0.86247 0.77832 0.84499 0.77456 1.21244 1.21647 1.21230 1.22693 0.89476 0.87552 0.97871 1.67278 1.22567 1.12307 1.24426 0.90842 0.91861 0.91959 0.88919 0.91754 0.90285 0.91594 0.83396 0.82787 0.76020 0.90162 0.90798 0.77913 0.95336 0.95870 0.77721 0.93406 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 9.53 37.16 0.35 -0.77 16 2 C 0.08 0.58 3.10 -26.73 -0.08 0.50 16 3 C -0.15 -0.81 9.56 37.16 0.36 -0.45 16 4 O -0.30 -2.73 9.75 -18.18 -0.18 -2.91 16 5 C 0.35 3.36 7.46 -16.96 -0.13 3.24 16 6 C -0.20 -1.70 10.02 -39.34 -0.39 -2.10 16 7 C 0.02 0.16 9.70 -38.92 -0.38 -0.21 16 8 C -0.23 -2.33 5.89 -104.82 -0.62 -2.95 16 9 C 0.57 6.98 7.77 -12.44 -0.10 6.89 16 10 O -0.54 -8.45 16.41 5.29 0.09 -8.36 16 11 N -0.72 -7.95 5.40 -61.33 -0.33 -8.28 16 12 C 0.09 1.12 5.34 -4.05 -0.02 1.10 16 13 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 14 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 15 O -0.55 -8.25 13.03 -35.23 -0.46 -8.71 16 16 C 0.13 2.40 5.90 -4.04 -0.02 2.37 16 17 N -0.73 -18.09 5.55 -59.91 -0.33 -18.43 16 18 C -0.25 -6.83 9.99 -15.06 -0.15 -6.98 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 22 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.18 1.70 10.71 -17.14 -0.18 1.51 16 27 N -0.54 -5.44 8.61 -12.97 -0.11 -5.55 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.76 6.97 -51.92 -0.36 0.40 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.15 1.30 7.73 -52.49 -0.41 0.90 16 37 H 0.40 3.81 6.40 -40.82 -0.26 3.54 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.37 4.62 9.04 45.56 0.41 5.03 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.39 10.36 7.67 -40.82 -0.31 10.05 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.17 1.19 6.41 -52.49 -0.34 0.85 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -34.15 384.23 -7.26 -41.41 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -5.89 Total: 12.26 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.54 Total: 2.91 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.05 Total: -59.70 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.55 Total: -19.99 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.15 -7.26 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496992935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.044 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds