Wall clock time and date at job start Tue Mar 31 2020 13:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47251 * 2 1 4 4 O 1.42897 * 109.47521 * 120.00468 * 2 1 3 5 5 C 1.35494 * 117.00257 * 89.99601 * 4 2 1 6 6 C 1.39166 * 119.52763 * 180.02562 * 5 4 2 7 7 C 1.37955 * 119.26416 * 179.97438 * 6 5 4 8 8 C 1.40278 * 118.36178 * 0.02562 * 7 6 5 9 9 C 1.47614 * 120.50514 * 179.97438 * 8 7 6 10 10 O 1.21587 * 119.99368 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00532 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00405 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47387 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47113 * 60.00542 * 13 12 11 15 15 O 1.42895 * 109.47271 * 300.00096 * 13 12 11 16 16 C 1.53005 * 109.47192 * 180.02562 * 13 12 11 17 17 N 1.46500 * 109.47009 * 185.00210 * 16 13 12 18 18 C 1.36938 * 120.00257 * 179.97438 * 17 16 13 19 19 H 1.08008 * 119.99518 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00482 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99733 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00280 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47172 * 59.99637 * 22 20 18 24 24 H 1.48492 * 109.47283 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47007 * 300.00022 * 22 20 18 26 26 C 1.39531 * 118.99845 * 0.02562 * 8 7 6 27 27 N 1.31662 * 120.62701 * 359.97438 * 26 8 7 28 28 H 1.08999 * 109.47517 * 60.00266 * 1 2 3 29 29 H 1.09005 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46900 * 299.99633 * 1 2 3 31 31 H 1.09011 * 109.47016 * 240.00369 * 2 1 3 32 32 H 1.08996 * 109.47333 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47051 * 300.00522 * 3 2 1 34 34 H 1.08998 * 109.46516 * 60.00031 * 3 2 1 35 35 H 1.08000 * 120.36870 * 359.96208 * 6 5 4 36 36 H 1.08002 * 120.82085 * 179.72833 * 7 6 5 37 37 H 0.96997 * 119.99705 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47118 * 300.00572 * 12 11 9 39 39 H 1.09007 * 109.47046 * 60.00254 * 12 11 9 40 40 H 0.96696 * 114.00232 * 300.00186 * 15 13 12 41 41 H 1.09004 * 109.46588 * 304.99815 * 16 13 12 42 42 H 1.08990 * 109.47157 * 64.99820 * 16 13 12 43 43 H 0.97008 * 120.00219 * 0.02562 * 17 16 13 44 44 H 0.97001 * 119.99920 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.68362 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2114 -2.0092 1.0652 6 6 2.6744 -2.7179 2.1698 7 6 2.8808 -4.0775 2.0607 8 6 2.6137 -4.6954 0.8299 9 6 2.8185 -6.1474 0.6604 10 8 3.2211 -6.8173 1.5917 11 7 2.5591 -6.7305 -0.5267 12 6 2.7629 -8.1714 -0.6951 13 6 2.3981 -8.5744 -2.1252 14 1 3.0317 -8.0333 -2.8280 15 8 1.0280 -8.2546 -2.3754 16 6 2.6103 -10.0794 -2.3009 17 7 2.3762 -10.4456 -3.6999 18 6 2.5087 -11.7491 -4.0980 19 1 2.7863 -12.5072 -3.3805 20 6 2.2863 -12.0961 -5.4234 21 7 1.9476 -11.1723 -6.2976 22 14 2.4665 -13.8745 -5.9662 23 1 1.5117 -14.7225 -5.2083 24 1 2.1767 -13.9804 -7.4187 25 1 3.8537 -14.3343 -5.7029 26 6 2.1525 -3.9165 -0.2319 27 7 1.9694 -2.6211 -0.0837 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.8702 -2.2090 3.1021 36 1 3.2437 -4.6513 2.9006 37 1 2.2382 -6.1960 -1.2697 38 1 3.8081 -8.4152 -0.5046 39 1 2.1296 -8.7125 0.0080 40 1 0.4057 -8.7016 -1.7855 41 1 3.6327 -10.3368 -2.0242 42 1 1.9135 -10.6216 -1.6619 43 1 2.1279 -9.7645 -4.3446 44 1 1.7925 -11.4148 -7.2239 45 1 1.9437 -4.3807 -1.1845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496992935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:43 Heat of formation + Delta-G solvation = -109.260290 kcal Electronic energy + Delta-G solvation = -26151.588127 eV Core-core repulsion = 22168.622651 eV Total energy + Delta-G solvation = -3982.965475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99700 -40.75898 -39.24879 -38.71884 -36.09633 -35.40349 -34.30916 -33.64543 -33.20872 -31.88481 -30.25664 -28.18197 -27.21092 -25.38801 -25.12741 -24.13799 -22.77157 -22.17131 -21.68745 -19.71160 -19.31801 -18.91690 -18.18520 -17.44727 -17.19218 -16.82688 -16.49314 -16.41513 -15.96296 -15.83630 -15.58205 -15.46377 -15.15116 -14.88456 -14.73509 -14.26386 -14.22727 -14.03399 -13.86066 -13.72725 -13.31791 -13.22660 -13.17456 -12.95550 -12.87384 -12.71182 -12.19816 -11.97159 -11.94199 -11.79602 -11.78235 -11.43262 -11.09537 -10.98565 -10.90985 -10.64415 -10.24023 -9.63099 -9.00067 -7.94165 -5.23467 -0.39878 0.09780 1.48319 1.51227 1.57417 1.74706 1.88909 2.01870 2.56892 2.72388 3.06459 3.37000 3.47782 3.58506 3.63469 3.75956 3.87833 3.91943 4.00498 4.02952 4.05504 4.22796 4.27037 4.41898 4.53457 4.61979 4.64054 4.70106 4.74365 4.82213 4.85075 4.92121 4.95890 5.01989 5.19956 5.22556 5.25635 5.27313 5.32939 5.48951 6.12620 6.27010 6.42386 6.61488 6.81391 7.09872 7.34224 8.09912 8.32650 9.28784 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.001939 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.996011 B =14437.453865 C =15448.478081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.304 6.304 5 C 0.336 3.664 6 C -0.196 4.196 7 C 0.016 3.984 8 C -0.237 4.237 9 C 0.569 3.431 10 O -0.577 6.577 11 N -0.706 5.706 12 C 0.102 3.898 13 C 0.108 3.892 14 H 0.102 0.898 15 O -0.562 6.562 16 C 0.122 3.878 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.277 1.277 26 C 0.185 3.815 27 N -0.553 5.553 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.413 0.587 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.386 0.614 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 25.334 17.198 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.211 6.211 5 C 0.157 3.843 6 C -0.216 4.216 7 C -0.009 4.009 8 C -0.243 4.243 9 C 0.357 3.643 10 O -0.458 6.458 11 N -0.358 5.358 12 C -0.022 4.022 13 C 0.048 3.952 14 H 0.120 0.880 15 O -0.369 6.369 16 C -0.006 4.006 17 N -0.383 5.383 18 C -0.381 4.381 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.618 5.618 22 Si 0.803 3.197 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.204 1.204 26 C 0.027 3.973 27 N -0.277 5.277 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.188 0.812 36 H 0.178 0.822 37 H 0.251 0.749 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.235 0.765 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.209 0.791 44 H 0.060 0.940 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.448 25.754 16.930 30.824 hybrid contribution -0.145 -1.549 -0.223 1.572 sum -0.593 24.206 16.707 29.418 Atomic orbital electron populations 1.22196 0.94057 1.02253 1.03734 1.22638 0.95109 0.93726 0.86892 1.21922 1.01896 0.92382 1.04167 1.86276 1.79297 1.15563 1.39951 1.20344 0.88884 0.85145 0.89881 1.21261 1.06726 0.93659 0.99942 1.21666 0.89465 0.93292 0.96521 1.20704 1.12029 0.93927 0.97654 1.18108 0.76771 0.87078 0.82340 1.90772 1.48136 1.65639 1.41287 1.45687 1.67135 1.09521 1.13485 1.21897 1.02764 0.80825 0.96753 1.22103 0.83921 0.94482 0.94731 0.88030 1.86554 1.15854 1.71642 1.62853 1.21416 0.98819 0.93969 0.86347 1.42410 1.83730 1.06516 1.05618 1.19613 1.38240 0.86820 0.93440 0.90564 1.25594 1.03067 1.01711 0.96442 1.69824 1.55353 1.33780 1.02841 0.85198 0.78099 0.79845 0.76516 1.20385 1.22199 1.20353 1.22927 0.88786 0.87339 0.98283 1.67317 1.23019 1.12505 1.24841 0.89315 0.93525 0.91557 0.89883 0.91988 0.88607 0.91195 0.81243 0.82197 0.74906 0.90261 0.90465 0.76546 0.94801 0.95049 0.79118 0.93997 0.80091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.53 71.98 0.69 -1.33 16 2 C 0.07 0.99 3.10 30.60 0.09 1.09 16 3 C -0.15 -1.33 9.56 71.98 0.69 -0.65 16 4 O -0.30 -5.26 9.75 -87.95 -0.86 -6.12 16 5 C 0.34 6.21 7.46 84.83 0.63 6.84 16 6 C -0.20 -3.07 10.02 22.43 0.22 -2.85 16 7 C 0.02 0.28 9.70 22.70 0.22 0.50 16 8 C -0.24 -4.66 5.89 -19.99 -0.12 -4.77 16 9 C 0.57 13.51 7.77 86.72 0.67 14.19 16 10 O -0.58 -17.69 16.41 -3.99 -0.07 -17.75 16 11 N -0.71 -14.76 5.40 -466.21 -2.52 -17.28 16 12 C 0.10 2.40 5.34 86.38 0.46 2.86 16 13 C 0.11 3.02 3.09 30.59 0.09 3.12 16 14 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 15 O -0.56 -16.08 13.03 -148.98 -1.94 -18.02 16 16 C 0.12 4.47 5.90 86.38 0.51 4.98 16 17 N -0.74 -36.73 5.55 -343.45 -1.91 -38.63 16 18 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 21 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 22 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 C 0.18 3.24 10.71 85.03 0.91 4.15 16 27 N -0.55 -10.60 8.61 -307.82 -2.65 -13.25 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.30 6.97 -2.38 -0.02 1.28 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.16 2.57 7.73 -2.91 -0.02 2.55 16 37 H 0.41 7.15 6.40 -92.71 -0.59 6.55 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.39 8.95 9.04 -74.06 -0.67 8.28 16 41 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.38 20.24 7.67 -92.70 -0.71 19.53 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.18 2.36 6.41 -2.91 -0.02 2.35 16 Total: -1.00 -72.35 384.23 -2.18 -74.53 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.94 Total: 36.29 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 6.39 Total: 11.29 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -6.79 Total: -128.15 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -2.86 Total: -41.89 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.35 -2.18 -74.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496992935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.727 kcal (2) G-P(sol) polarization free energy of solvation -72.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds