Wall clock time and date at job start Tue Mar 31 2020 13:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 5 5 C 1.35494 * 117.00024 * 209.99987 * 4 2 1 6 6 C 1.39174 * 119.52592 * 179.73366 * 5 4 2 7 7 C 1.37950 * 119.26043 * 179.75219 * 6 5 4 8 8 C 1.40290 * 118.36281 * 0.51170 * 7 6 5 9 9 C 1.47606 * 120.50034 * 179.75151 * 8 7 6 10 10 O 1.21583 * 120.00602 * 359.97435 * 9 8 7 11 11 N 1.34777 * 119.99839 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00311 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47267 * 179.97438 * 12 11 9 14 14 H 1.09004 * 109.46916 * 304.99106 * 13 12 11 15 15 O 1.42898 * 109.47264 * 64.99930 * 13 12 11 16 16 C 1.53002 * 109.46726 * 184.99540 * 13 12 11 17 17 N 1.46509 * 109.46932 * 179.97438 * 16 13 12 18 18 C 1.36935 * 119.99807 * 180.02562 * 17 16 13 19 19 H 1.07997 * 120.00151 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99543 * 180.02562 * 18 17 16 21 21 N 1.31610 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99753 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47199 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47012 * 119.99585 * 22 20 18 25 25 H 1.48503 * 109.46938 * 239.99617 * 22 20 18 26 26 C 1.39524 * 118.99811 * 359.72412 * 8 7 6 27 27 N 1.31663 * 120.62927 * 0.03095 * 26 8 7 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.07996 * 120.37169 * 359.97438 * 6 5 4 36 36 H 1.08006 * 120.82296 * 180.23633 * 7 6 5 37 37 H 0.97006 * 120.00432 * 359.97438 * 11 9 8 38 38 H 1.09007 * 109.46688 * 299.99659 * 12 11 9 39 39 H 1.08995 * 109.47253 * 59.99425 * 12 11 9 40 40 H 0.96694 * 114.00076 * 59.99571 * 15 13 12 41 41 H 1.08991 * 109.47512 * 299.99901 * 16 13 12 42 42 H 1.09002 * 109.47242 * 60.00131 * 16 13 12 43 43 H 0.96998 * 119.99647 * 359.97438 * 17 16 13 44 44 H 0.97004 * 120.00005 * 180.02562 * 21 20 18 45 45 H 1.07997 * 119.68493 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 3.1971 -1.3122 -1.0653 6 6 3.7080 -1.9900 -2.1682 7 6 4.9233 -2.6339 -2.0605 8 6 5.5951 -2.5877 -0.8298 9 6 6.8957 -3.2648 -0.6604 10 8 7.3925 -3.8688 -1.5912 11 7 7.5326 -3.2135 0.5263 12 6 8.8238 -3.8850 0.6944 13 6 9.3266 -3.6731 2.1238 14 1 9.3602 -2.6058 2.3425 15 8 8.4419 -4.3199 3.0408 16 6 10.7298 -4.2669 2.2640 17 7 11.2116 -4.0634 3.6325 18 6 12.4526 -4.5142 3.9955 19 1 13.0760 -5.0201 3.2732 20 6 12.9089 -4.3218 5.2923 21 7 12.1489 -3.7058 6.1728 22 14 14.6015 -4.9374 5.7878 23 1 15.2509 -5.5915 4.6234 24 1 15.4320 -3.7923 6.2396 25 1 14.4670 -5.9184 6.8946 26 6 5.0156 -1.8916 0.2315 27 7 3.8555 -1.2868 0.0832 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1609 -2.0088 -3.0992 36 1 5.3450 -3.1643 -2.9015 37 1 7.1365 -2.7313 1.2690 38 1 8.7057 -4.9520 0.5048 39 1 9.5443 -3.4685 -0.0094 40 1 8.3630 -5.2739 2.9046 41 1 10.6963 -5.3340 2.0451 42 1 11.4046 -3.7735 1.5644 43 1 10.6518 -3.6087 4.2811 44 1 12.4680 -3.5711 7.0789 45 1 5.5229 -1.8493 1.1839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496992936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:47 Heat of formation + Delta-G solvation = -81.519456 kcal Electronic energy + Delta-G solvation = -26144.179234 eV Core-core repulsion = 22162.416691 eV Total energy + Delta-G solvation = -3981.762542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25408 -39.84915 -38.40363 -37.56133 -34.56619 -34.04181 -33.72389 -32.90849 -31.48175 -30.88382 -28.91902 -27.70905 -25.74897 -24.43963 -24.24148 -22.61106 -21.53868 -21.48958 -20.69725 -19.01642 -18.15520 -17.39570 -17.15462 -16.27041 -16.18728 -15.98881 -15.52837 -15.16170 -14.93548 -14.78156 -14.50100 -14.48170 -14.05130 -13.75907 -13.52036 -13.41238 -13.08647 -12.94715 -12.83299 -12.75480 -12.66417 -12.39030 -12.31324 -11.88862 -11.38682 -11.20469 -10.97699 -10.85162 -10.66504 -10.46433 -10.37184 -10.15350 -9.91117 -9.82142 -9.53207 -9.26165 -8.93428 -8.88890 -6.95897 -5.78137 -3.07856 0.37133 0.79481 2.53140 2.63604 2.96662 3.42212 3.47828 3.50097 3.50131 3.74149 4.37514 4.39555 4.46783 4.52344 4.52667 4.60112 4.67302 4.72069 4.81560 4.85376 5.11533 5.17038 5.20871 5.25380 5.30252 5.36255 5.47950 5.53625 5.57471 5.64662 5.68684 5.75513 5.79619 5.91671 5.95371 6.16223 6.29696 6.48352 6.64422 6.79382 7.31134 7.35109 7.67357 7.90696 8.03879 8.40010 9.51905 10.08277 10.44124 11.44206 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.001939 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.448800 B =14438.248731 C =15447.431518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.169 4.169 4 O -0.298 6.298 5 C 0.345 3.655 6 C -0.200 4.200 7 C 0.018 3.982 8 C -0.227 4.227 9 C 0.566 3.434 10 O -0.541 6.541 11 N -0.716 5.716 12 C 0.090 3.910 13 C 0.088 3.912 14 H 0.105 0.895 15 O -0.552 6.552 16 C 0.127 3.873 17 N -0.726 5.726 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.182 3.818 27 N -0.542 5.542 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.403 0.597 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.374 0.626 41 H 0.023 0.977 42 H 0.029 0.971 43 H 0.389 0.611 44 H 0.255 0.745 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.882 7.176 -15.859 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.227 4.227 4 O -0.205 6.205 5 C 0.167 3.833 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.232 4.232 9 C 0.353 3.647 10 O -0.419 6.419 11 N -0.368 5.368 12 C -0.034 4.034 13 C 0.028 3.972 14 H 0.123 0.877 15 O -0.357 6.357 16 C -0.002 4.002 17 N -0.371 5.371 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.024 3.976 27 N -0.266 5.266 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.239 0.761 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.221 0.779 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.224 0.776 44 H 0.065 0.935 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -23.985 7.761 -15.816 29.760 hybrid contribution 1.109 -0.832 0.207 1.401 sum -22.877 6.929 -15.608 28.548 Atomic orbital electron populations 1.21917 0.92651 1.03111 1.03137 1.22445 0.94607 0.92901 0.87784 1.22223 1.02262 0.95401 1.02769 1.86276 1.31336 1.63785 1.39075 1.20075 0.85567 0.88120 0.89581 1.21056 0.98138 1.03399 0.99442 1.21532 0.91084 0.91548 0.96623 1.20812 0.98636 1.07046 0.96741 1.17878 0.83957 0.80128 0.82784 1.90790 1.67360 1.43588 1.40189 1.45837 1.22533 1.55174 1.13222 1.22160 0.84359 0.98220 0.98656 1.22400 0.90209 0.98685 0.85866 0.87735 1.86572 1.66141 1.25405 1.57590 1.21193 0.91512 0.97537 0.89980 1.42233 1.17944 1.70358 1.06522 1.19266 0.92556 1.30646 0.95010 0.91136 1.24765 0.98568 1.01294 0.96266 1.69684 1.36755 1.47181 1.04136 0.86110 0.83865 0.77977 0.78173 1.20538 1.21826 1.21823 1.22686 0.88872 0.88200 0.97838 1.67281 1.10561 1.24358 1.24380 0.91593 0.91751 0.90284 0.88917 0.91868 0.91957 0.90843 0.83393 0.82784 0.76088 0.90779 0.90170 0.77852 0.95886 0.95335 0.77640 0.93513 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.56 37.16 0.36 -0.45 16 2 C 0.08 0.58 3.10 -26.73 -0.08 0.50 16 3 C -0.17 -1.13 9.53 37.16 0.35 -0.77 16 4 O -0.30 -2.73 9.75 -18.17 -0.18 -2.91 16 5 C 0.35 3.36 7.46 -16.95 -0.13 3.23 16 6 C -0.20 -1.70 10.02 -39.34 -0.39 -2.09 16 7 C 0.02 0.16 9.70 -38.92 -0.38 -0.21 16 8 C -0.23 -2.33 5.89 -104.82 -0.62 -2.94 16 9 C 0.57 6.98 7.77 -12.44 -0.10 6.88 16 10 O -0.54 -8.44 16.41 5.29 0.09 -8.36 16 11 N -0.72 -7.94 5.46 -61.32 -0.33 -8.28 16 12 C 0.09 1.12 5.31 -4.04 -0.02 1.10 16 13 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 14 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 15 O -0.55 -8.37 13.03 -35.23 -0.46 -8.83 16 16 C 0.13 2.38 5.92 -4.04 -0.02 2.36 16 17 N -0.73 -18.07 5.49 -59.91 -0.33 -18.40 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 C 0.18 1.69 10.71 -17.14 -0.18 1.51 16 27 N -0.54 -5.43 8.61 -12.96 -0.11 -5.54 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.76 6.97 -51.93 -0.36 0.40 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.15 1.30 7.73 -52.48 -0.41 0.90 16 37 H 0.40 3.77 6.53 -40.82 -0.27 3.50 16 38 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.37 4.75 9.04 45.56 0.41 5.16 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.39 10.38 7.54 -40.82 -0.31 10.07 16 44 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.17 1.18 6.41 -52.49 -0.34 0.84 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -34.22 384.23 -7.26 -41.49 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -5.89 Total: 12.23 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.54 Total: 2.92 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.05 Total: -59.66 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.55 Total: -20.09 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.22 -7.26 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496992936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.034 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds