Wall clock time and date at job start Tue Mar 31 2020 13:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 5 5 C 1.35494 * 117.00024 * 209.99987 * 4 2 1 6 6 C 1.39174 * 119.52592 * 179.73366 * 5 4 2 7 7 C 1.37950 * 119.26043 * 179.75219 * 6 5 4 8 8 C 1.40290 * 118.36281 * 0.51170 * 7 6 5 9 9 C 1.47606 * 120.50034 * 179.75151 * 8 7 6 10 10 O 1.21583 * 120.00602 * 359.97435 * 9 8 7 11 11 N 1.34777 * 119.99839 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00311 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47267 * 179.97438 * 12 11 9 14 14 H 1.09004 * 109.46916 * 304.99106 * 13 12 11 15 15 O 1.42898 * 109.47264 * 64.99930 * 13 12 11 16 16 C 1.53002 * 109.46726 * 184.99540 * 13 12 11 17 17 N 1.46509 * 109.46932 * 179.97438 * 16 13 12 18 18 C 1.36935 * 119.99807 * 180.02562 * 17 16 13 19 19 H 1.07997 * 120.00151 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99543 * 180.02562 * 18 17 16 21 21 N 1.31610 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99753 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47199 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47012 * 119.99585 * 22 20 18 25 25 H 1.48503 * 109.46938 * 239.99617 * 22 20 18 26 26 C 1.39524 * 118.99811 * 359.72412 * 8 7 6 27 27 N 1.31663 * 120.62927 * 0.03095 * 26 8 7 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.07996 * 120.37169 * 359.97438 * 6 5 4 36 36 H 1.08006 * 120.82296 * 180.23633 * 7 6 5 37 37 H 0.97006 * 120.00432 * 359.97438 * 11 9 8 38 38 H 1.09007 * 109.46688 * 299.99659 * 12 11 9 39 39 H 1.08995 * 109.47253 * 59.99425 * 12 11 9 40 40 H 0.96694 * 114.00076 * 59.99571 * 15 13 12 41 41 H 1.08991 * 109.47512 * 299.99901 * 16 13 12 42 42 H 1.09002 * 109.47242 * 60.00131 * 16 13 12 43 43 H 0.96998 * 119.99647 * 359.97438 * 17 16 13 44 44 H 0.97004 * 120.00005 * 180.02562 * 21 20 18 45 45 H 1.07997 * 119.68493 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 3.1971 -1.3122 -1.0653 6 6 3.7080 -1.9900 -2.1682 7 6 4.9233 -2.6339 -2.0605 8 6 5.5951 -2.5877 -0.8298 9 6 6.8957 -3.2648 -0.6604 10 8 7.3925 -3.8688 -1.5912 11 7 7.5326 -3.2135 0.5263 12 6 8.8238 -3.8850 0.6944 13 6 9.3266 -3.6731 2.1238 14 1 9.3602 -2.6058 2.3425 15 8 8.4419 -4.3199 3.0408 16 6 10.7298 -4.2669 2.2640 17 7 11.2116 -4.0634 3.6325 18 6 12.4526 -4.5142 3.9955 19 1 13.0760 -5.0201 3.2732 20 6 12.9089 -4.3218 5.2923 21 7 12.1489 -3.7058 6.1728 22 14 14.6015 -4.9374 5.7878 23 1 15.2509 -5.5915 4.6234 24 1 15.4320 -3.7923 6.2396 25 1 14.4670 -5.9184 6.8946 26 6 5.0156 -1.8916 0.2315 27 7 3.8555 -1.2868 0.0832 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1609 -2.0088 -3.0992 36 1 5.3450 -3.1643 -2.9015 37 1 7.1365 -2.7313 1.2690 38 1 8.7057 -4.9520 0.5048 39 1 9.5443 -3.4685 -0.0094 40 1 8.3630 -5.2739 2.9046 41 1 10.6963 -5.3340 2.0451 42 1 11.4046 -3.7735 1.5644 43 1 10.6518 -3.6087 4.2811 44 1 12.4680 -3.5711 7.0789 45 1 5.5229 -1.8493 1.1839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496992936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:46 Heat of formation + Delta-G solvation = -109.404268 kcal Electronic energy + Delta-G solvation = -26145.388410 eV Core-core repulsion = 22162.416691 eV Total energy + Delta-G solvation = -3982.971719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99697 -40.75746 -39.24688 -38.72086 -36.08538 -35.41756 -34.31045 -33.64568 -33.19801 -31.88814 -30.25685 -28.18277 -27.21364 -25.39064 -25.12812 -24.14288 -22.76652 -22.17397 -21.68456 -19.71185 -19.32025 -18.91557 -18.18724 -17.44636 -17.19618 -16.81764 -16.49533 -16.41964 -15.91741 -15.88100 -15.59770 -15.45546 -15.14690 -14.90728 -14.70200 -14.32961 -14.13473 -14.08380 -13.81854 -13.76376 -13.31352 -13.23307 -13.17406 -12.94613 -12.87513 -12.78281 -12.11441 -11.95349 -11.94198 -11.79746 -11.78248 -11.43742 -11.09552 -11.00536 -10.90897 -10.64329 -10.24172 -9.63147 -8.99940 -7.94537 -5.23627 -0.39959 0.09734 1.48400 1.48890 1.59042 1.74654 1.88885 2.02030 2.56449 2.72336 3.06373 3.37020 3.46798 3.58865 3.63610 3.75771 3.87795 3.91957 4.00471 4.03514 4.06263 4.22185 4.26979 4.42080 4.53404 4.62020 4.63979 4.70023 4.74406 4.82120 4.85037 4.92046 4.95668 5.01885 5.19764 5.21799 5.25581 5.27990 5.33202 5.49523 6.12557 6.26966 6.41990 6.61387 6.81504 7.09615 7.34314 8.10146 8.33061 9.28821 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.001939 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.448800 B =14438.248731 C =15447.431518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.165 4.165 4 O -0.304 6.304 5 C 0.336 3.664 6 C -0.196 4.196 7 C 0.016 3.984 8 C -0.237 4.237 9 C 0.569 3.431 10 O -0.577 6.577 11 N -0.707 5.707 12 C 0.103 3.897 13 C 0.107 3.893 14 H 0.103 0.897 15 O -0.563 6.563 16 C 0.121 3.879 17 N -0.739 5.739 18 C -0.247 4.247 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.967 5.967 22 Si 0.974 3.026 23 H -0.266 1.266 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.185 3.815 27 N -0.553 5.553 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.413 0.587 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.385 0.615 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.656 7.263 -16.698 30.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.222 4.222 4 O -0.211 6.211 5 C 0.157 3.843 6 C -0.216 4.216 7 C -0.009 4.009 8 C -0.243 4.243 9 C 0.357 3.643 10 O -0.458 6.458 11 N -0.359 5.359 12 C -0.022 4.022 13 C 0.047 3.953 14 H 0.121 0.879 15 O -0.369 6.369 16 C -0.006 4.006 17 N -0.383 5.383 18 C -0.378 4.378 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.618 5.618 22 Si 0.803 3.197 23 H -0.190 1.190 24 H -0.221 1.221 25 H -0.221 1.221 26 C 0.027 3.973 27 N -0.277 5.277 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.188 0.812 36 H 0.178 0.822 37 H 0.251 0.749 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.234 0.766 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -24.780 7.843 -16.687 30.887 hybrid contribution 1.262 -0.843 0.406 1.571 sum -23.517 7.000 -16.281 29.447 Atomic orbital electron populations 1.21922 0.90978 1.03302 1.04166 1.22636 0.95898 0.92939 0.86888 1.22197 1.01136 0.95181 1.03732 1.86276 1.31064 1.63797 1.39948 1.20349 0.85798 0.88231 0.89878 1.21261 0.97815 1.02515 0.99992 1.21669 0.91269 0.91489 0.96521 1.20704 0.98024 1.07928 0.97666 1.18106 0.84326 0.79537 0.82320 1.90771 1.68395 1.45336 1.41321 1.45711 1.21951 1.54809 1.13401 1.21911 0.84918 0.98551 0.96826 1.22110 0.87945 0.98150 0.87065 0.87895 1.86554 1.65856 1.26494 1.58010 1.21411 0.93940 0.98286 0.86993 1.42411 1.17145 1.70120 1.08575 1.19685 0.93615 1.29423 0.95120 0.90535 1.25587 1.02326 1.02387 0.96565 1.69835 1.38590 1.49133 1.04249 0.85071 0.79618 0.77136 0.77894 1.19001 1.22062 1.22084 1.22926 0.88651 0.87503 0.98263 1.67321 1.10828 1.24742 1.24793 0.91198 0.91980 0.88607 0.89881 0.93521 0.91565 0.89316 0.81244 0.82198 0.74944 0.90503 0.90209 0.76582 0.95067 0.94796 0.79036 0.94017 0.80076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.56 71.98 0.69 -0.64 16 2 C 0.07 0.99 3.10 30.60 0.09 1.09 16 3 C -0.17 -2.01 9.53 71.98 0.69 -1.33 16 4 O -0.30 -5.25 9.75 -87.95 -0.86 -6.11 16 5 C 0.34 6.20 7.46 84.83 0.63 6.83 16 6 C -0.20 -3.07 10.02 22.43 0.22 -2.84 16 7 C 0.02 0.28 9.70 22.70 0.22 0.50 16 8 C -0.24 -4.65 5.89 -20.00 -0.12 -4.77 16 9 C 0.57 13.50 7.77 86.72 0.67 14.17 16 10 O -0.58 -17.67 16.41 -3.98 -0.07 -17.73 16 11 N -0.71 -14.73 5.46 -466.19 -2.54 -17.28 16 12 C 0.10 2.40 5.31 86.38 0.46 2.86 16 13 C 0.11 3.00 3.09 30.59 0.09 3.10 16 14 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 15 O -0.56 -16.37 13.03 -148.98 -1.94 -18.31 16 16 C 0.12 4.43 5.92 86.38 0.51 4.94 16 17 N -0.74 -36.62 5.49 -343.44 -1.89 -38.51 16 18 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 21 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 22 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 C 0.18 3.23 10.71 85.03 0.91 4.14 16 27 N -0.55 -10.58 8.61 -307.82 -2.65 -13.23 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 1.30 6.97 -2.39 -0.02 1.28 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.16 2.57 7.73 -2.91 -0.02 2.55 16 37 H 0.41 7.07 6.53 -92.70 -0.60 6.46 16 38 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 40 H 0.39 9.25 9.04 -74.06 -0.67 8.58 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.38 20.26 7.54 -92.71 -0.70 19.56 16 44 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 45 H 0.18 2.34 6.41 -2.91 -0.02 2.32 16 Total: -1.00 -72.48 384.23 -2.19 -74.67 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.94 Total: 36.16 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 6.39 Total: 11.36 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -6.80 Total: -128.01 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -2.86 Total: -42.15 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.48 -2.19 -74.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496992936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.731 kcal (2) G-P(sol) polarization free energy of solvation -72.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds