Wall clock time and date at job start Tue Mar 31 2020 14:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46587 * 2 1 4 4 C 1.52999 * 109.47486 * 240.00373 * 2 1 3 5 5 C 1.53002 * 109.46915 * 174.99997 * 4 2 1 6 6 N 1.46507 * 109.46896 * 179.97438 * 5 4 2 7 7 C 1.36932 * 120.00027 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99863 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99951 * 179.97438 * 7 6 5 10 10 N 1.31613 * 119.99864 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99702 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47154 * 90.00463 * 11 9 7 13 13 H 1.48499 * 109.46744 * 209.99895 * 11 9 7 14 14 H 1.48500 * 109.47130 * 329.99945 * 11 9 7 15 15 N 1.46496 * 109.47069 * 119.99641 * 2 1 3 16 16 C 1.34774 * 120.00339 * 275.00459 * 15 2 1 17 17 O 1.21282 * 119.99971 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00164 * 180.02562 * 16 15 2 19 19 H 1.08998 * 109.46456 * 299.99542 * 18 16 15 20 20 C 1.52997 * 109.47238 * 59.99708 * 18 16 15 21 21 N 1.46500 * 109.47187 * 180.02562 * 18 16 15 22 22 C 1.34768 * 120.00056 * 154.99900 * 21 18 16 23 23 O 1.21618 * 120.00260 * 359.97438 * 22 21 18 24 24 C 1.47382 * 120.00259 * 179.97438 * 22 21 18 25 25 C 1.47014 * 127.19660 * 179.97438 * 24 22 21 26 26 C 1.34175 * 105.95829 * 179.97438 * 25 24 22 27 27 O 1.34213 * 109.12089 * 359.97438 * 26 25 24 28 28 C 1.33657 * 110.91032 * 359.76673 * 27 26 25 29 29 H 1.08993 * 109.47834 * 300.00012 * 1 2 3 30 30 H 1.09002 * 109.47185 * 60.00122 * 1 2 3 31 31 H 1.09003 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46779 * 294.99432 * 4 2 1 33 33 H 1.08996 * 109.47464 * 54.99648 * 4 2 1 34 34 H 1.09003 * 109.46936 * 299.99338 * 5 4 2 35 35 H 1.08996 * 109.47633 * 60.00038 * 5 4 2 36 36 H 0.96996 * 119.99563 * 359.97438 * 6 5 4 37 37 H 0.97007 * 120.00083 * 179.97438 * 10 9 7 38 38 H 0.97005 * 119.99865 * 95.00876 * 15 2 1 39 39 H 1.09002 * 109.47153 * 180.02562 * 20 18 16 40 40 H 1.09001 * 109.46832 * 60.00314 * 20 18 16 41 41 H 1.09004 * 109.47261 * 300.00295 * 20 18 16 42 42 H 0.97001 * 119.99547 * 334.99728 * 21 18 16 43 43 H 1.08002 * 127.01976 * 359.94118 * 25 24 22 44 44 H 1.07993 * 125.44264 * 180.02562 * 26 25 24 45 45 H 1.08001 * 125.80038 * 180.26620 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5095 7 6 5.3954 -1.3401 -2.7793 8 1 6.0937 -0.8587 -2.1107 9 6 5.8583 -1.9954 -3.9122 10 7 5.0073 -2.5825 -4.7266 11 14 7.6891 -2.0450 -4.2798 12 1 8.2893 -3.2451 -3.6438 13 1 7.8974 -2.1069 -5.7488 14 1 8.3358 -0.8224 -3.7393 15 7 2.0183 -0.6905 1.1962 16 6 2.1469 -0.0182 2.3571 17 8 1.8589 1.1587 2.4115 18 6 2.6498 -0.7285 3.5875 19 1 1.9776 -1.5507 3.8325 20 6 4.0525 -1.2784 3.3215 21 7 2.6983 0.2127 4.7092 22 6 2.6194 -0.2429 5.9750 23 8 2.5075 -1.4354 6.1863 24 6 2.6688 0.7038 7.1035 25 6 2.5962 0.3833 8.5364 26 6 2.6812 1.5566 9.1817 27 8 2.7976 2.5457 8.2820 28 6 2.7980 2.0602 7.0367 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7518 -1.7715 -1.2056 33 1 1.6055 -0.2617 -2.1370 34 1 3.8532 0.4372 -1.3572 35 1 3.9995 -1.0726 -0.4259 36 1 3.4261 -1.7362 -3.1101 37 1 5.3307 -3.0401 -5.5185 38 1 2.2491 -1.6317 1.1526 39 1 4.4161 -1.7925 4.2112 40 1 4.7247 -0.4560 3.0765 41 1 4.0160 -1.9788 2.4870 42 1 2.7872 1.1638 4.5406 43 1 2.4947 -0.5966 8.9792 44 1 2.6601 1.6847 10.2538 45 1 2.8834 2.6430 6.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497192522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:03 Heat of formation + Delta-G solvation = -54.513797 kcal Electronic energy + Delta-G solvation = -26647.191717 eV Core-core repulsion = 22666.600228 eV Total energy + Delta-G solvation = -3980.591489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.91750 -40.55018 -39.25024 -36.74005 -35.16318 -34.43161 -33.36424 -32.31470 -31.28903 -30.43726 -29.48172 -27.91915 -25.29459 -24.17787 -23.52138 -21.88627 -21.70941 -20.88962 -20.47459 -20.38316 -19.05706 -17.38706 -17.01138 -16.73842 -16.52984 -16.29527 -15.77230 -15.30964 -15.03664 -14.80827 -14.61720 -14.09122 -13.82640 -13.79971 -13.53832 -13.36111 -13.28961 -12.89130 -12.86216 -12.78562 -12.52891 -12.40099 -11.93148 -11.82943 -11.26087 -11.06519 -10.83724 -10.69681 -10.60794 -10.36085 -10.20887 -10.07973 -9.98570 -9.73520 -9.46119 -9.20494 -9.12741 -8.89697 -6.96085 -5.79812 -3.08764 0.96410 1.69514 2.42768 2.48560 2.62227 3.04482 3.24788 3.41526 3.46829 3.48481 4.19446 4.27781 4.42493 4.54897 4.68040 4.82426 4.88762 4.90970 5.11401 5.17715 5.26897 5.28868 5.41484 5.49621 5.51727 5.58781 5.66728 5.69575 5.87112 5.88083 5.93973 5.98116 6.04915 6.18308 6.22261 6.28444 6.42556 6.53881 6.75685 6.80568 7.18673 7.37747 7.66850 7.90451 8.03852 8.39051 9.50241 10.07608 10.42063 11.42977 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.002238 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.181593 B =12506.591776 C =13421.694552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.136 4.136 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.710 5.710 16 C 0.514 3.486 17 O -0.543 6.543 18 C 0.126 3.874 19 H 0.116 0.884 20 C -0.162 4.162 21 N -0.709 5.709 22 C 0.591 3.409 23 O -0.536 6.536 24 C -0.236 4.236 25 C -0.164 4.164 26 C -0.042 4.042 27 O -0.174 6.174 28 C 0.026 3.974 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.405 0.595 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.407 0.593 43 H 0.160 0.840 44 H 0.209 0.791 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 7.693 24.768 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.108 0.892 4 C -0.174 4.174 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.362 5.362 16 C 0.299 3.701 17 O -0.421 6.421 18 C 0.018 3.982 19 H 0.133 0.867 20 C -0.220 4.220 21 N -0.362 5.362 22 C 0.379 3.621 23 O -0.414 6.414 24 C -0.240 4.240 25 C -0.184 4.184 26 C -0.107 4.107 27 O -0.069 6.069 28 C -0.044 4.044 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.240 0.760 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.244 0.756 43 H 0.178 0.822 44 H 0.226 0.774 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -8.678 8.007 25.009 27.656 hybrid contribution 0.946 -0.469 -0.685 1.259 sum -7.732 7.539 24.324 26.613 Atomic orbital electron populations 1.22165 0.95305 1.02147 1.02359 1.21027 0.93641 0.97709 0.83542 0.89218 1.22079 0.98126 1.00885 0.96311 1.20632 0.90289 0.95611 0.90804 1.42362 1.05396 1.64909 1.25141 1.19212 0.83811 1.28526 1.05563 0.91257 1.24752 0.97741 1.00872 0.97673 1.69656 1.32799 1.40568 1.15162 0.86186 0.85073 0.77688 0.77228 1.21685 1.21738 1.20766 1.46061 1.66294 1.14442 1.09359 1.20463 0.77568 0.87365 0.84737 1.90675 1.50690 1.15806 1.84899 1.20794 0.99782 0.92718 0.84895 0.86673 1.22161 0.94383 1.02013 1.03467 1.45566 1.75000 1.11247 1.04419 1.17221 0.75843 0.87454 0.81553 1.90797 1.49663 1.16030 1.84862 1.21469 1.14453 0.93403 0.94710 1.22789 1.04991 0.99762 0.90838 1.23976 1.06507 0.85149 0.95105 1.83811 1.70357 1.37561 1.15142 1.24558 0.99732 0.93431 0.86721 0.92443 0.91404 0.92409 0.91244 0.90122 0.96471 0.96375 0.78306 0.93494 0.76020 0.90739 0.91448 0.90304 0.75575 0.82215 0.77405 0.77043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16 2 C 0.15 1.80 2.57 -67.93 -0.17 1.63 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 C -0.14 -1.96 4.87 -26.73 -0.13 -2.09 16 5 C 0.15 2.94 6.15 -4.04 -0.02 2.91 16 6 N -0.73 -18.14 5.60 -59.90 -0.34 -18.48 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 11 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 N -0.71 -7.99 4.42 -53.81 -0.24 -8.23 16 16 C 0.51 6.11 7.19 -10.98 -0.08 6.03 16 17 O -0.54 -7.80 15.50 5.56 0.09 -7.71 16 18 C 0.13 1.32 2.98 -69.08 -0.21 1.11 16 19 H 0.12 1.20 7.57 -51.93 -0.39 0.81 16 20 C -0.16 -1.61 9.38 37.16 0.35 -1.26 16 21 N -0.71 -7.22 4.94 -56.02 -0.28 -7.50 16 22 C 0.59 6.87 7.78 -12.54 -0.10 6.77 16 23 O -0.54 -7.92 16.65 5.26 0.09 -7.83 16 24 C -0.24 -2.27 6.31 -103.28 -0.65 -2.92 16 25 C -0.16 -1.38 11.01 -37.46 -0.41 -1.80 16 26 C -0.04 -0.26 12.03 29.30 0.35 0.09 16 27 O -0.17 -1.29 10.52 7.65 0.08 -1.21 16 28 C 0.03 0.19 11.61 30.08 0.35 0.54 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 36 H 0.38 9.93 7.67 -40.82 -0.31 9.61 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.40 3.98 8.02 -40.82 -0.33 3.65 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.73 7.57 -51.93 -0.39 0.33 16 42 H 0.41 3.63 6.76 -40.82 -0.28 3.35 16 43 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.21 0.47 8.06 -52.49 -0.42 0.05 16 45 H 0.21 0.85 7.47 -52.49 -0.39 0.46 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -35.33 386.21 -6.36 -41.69 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.66 Total: 11.13 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.62 Total: 2.30 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.13 Total: -61.44 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.25 Total: -16.75 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.33 -6.36 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497192522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.827 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds