Wall clock time and date at job start Tue Mar 31 2020 14:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46587 * 2 1 4 4 C 1.52999 * 109.47486 * 240.00373 * 2 1 3 5 5 C 1.53002 * 109.46915 * 174.99997 * 4 2 1 6 6 N 1.46507 * 109.46896 * 179.97438 * 5 4 2 7 7 C 1.36932 * 120.00027 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99863 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99951 * 179.97438 * 7 6 5 10 10 N 1.31613 * 119.99864 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99702 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47154 * 90.00463 * 11 9 7 13 13 H 1.48499 * 109.46744 * 209.99895 * 11 9 7 14 14 H 1.48500 * 109.47130 * 329.99945 * 11 9 7 15 15 N 1.46496 * 109.47069 * 119.99641 * 2 1 3 16 16 C 1.34774 * 120.00339 * 275.00459 * 15 2 1 17 17 O 1.21282 * 119.99971 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00164 * 180.02562 * 16 15 2 19 19 H 1.08998 * 109.46456 * 299.99542 * 18 16 15 20 20 C 1.52997 * 109.47238 * 59.99708 * 18 16 15 21 21 N 1.46500 * 109.47187 * 180.02562 * 18 16 15 22 22 C 1.34768 * 120.00056 * 154.99900 * 21 18 16 23 23 O 1.21618 * 120.00260 * 359.97438 * 22 21 18 24 24 C 1.47382 * 120.00259 * 179.97438 * 22 21 18 25 25 C 1.47014 * 127.19660 * 179.97438 * 24 22 21 26 26 C 1.34175 * 105.95829 * 179.97438 * 25 24 22 27 27 O 1.34213 * 109.12089 * 359.97438 * 26 25 24 28 28 C 1.33657 * 110.91032 * 359.76673 * 27 26 25 29 29 H 1.08993 * 109.47834 * 300.00012 * 1 2 3 30 30 H 1.09002 * 109.47185 * 60.00122 * 1 2 3 31 31 H 1.09003 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46779 * 294.99432 * 4 2 1 33 33 H 1.08996 * 109.47464 * 54.99648 * 4 2 1 34 34 H 1.09003 * 109.46936 * 299.99338 * 5 4 2 35 35 H 1.08996 * 109.47633 * 60.00038 * 5 4 2 36 36 H 0.96996 * 119.99563 * 359.97438 * 6 5 4 37 37 H 0.97007 * 120.00083 * 179.97438 * 10 9 7 38 38 H 0.97005 * 119.99865 * 95.00876 * 15 2 1 39 39 H 1.09002 * 109.47153 * 180.02562 * 20 18 16 40 40 H 1.09001 * 109.46832 * 60.00314 * 20 18 16 41 41 H 1.09004 * 109.47261 * 300.00295 * 20 18 16 42 42 H 0.97001 * 119.99547 * 334.99728 * 21 18 16 43 43 H 1.08002 * 127.01976 * 359.94118 * 25 24 22 44 44 H 1.07993 * 125.44264 * 180.02562 * 26 25 24 45 45 H 1.08001 * 125.80038 * 180.26620 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5095 7 6 5.3954 -1.3401 -2.7793 8 1 6.0937 -0.8587 -2.1107 9 6 5.8583 -1.9954 -3.9122 10 7 5.0073 -2.5825 -4.7266 11 14 7.6891 -2.0450 -4.2798 12 1 8.2893 -3.2451 -3.6438 13 1 7.8974 -2.1069 -5.7488 14 1 8.3358 -0.8224 -3.7393 15 7 2.0183 -0.6905 1.1962 16 6 2.1469 -0.0182 2.3571 17 8 1.8589 1.1587 2.4115 18 6 2.6498 -0.7285 3.5875 19 1 1.9776 -1.5507 3.8325 20 6 4.0525 -1.2784 3.3215 21 7 2.6983 0.2127 4.7092 22 6 2.6194 -0.2429 5.9750 23 8 2.5075 -1.4354 6.1863 24 6 2.6688 0.7038 7.1035 25 6 2.5962 0.3833 8.5364 26 6 2.6812 1.5566 9.1817 27 8 2.7976 2.5457 8.2820 28 6 2.7980 2.0602 7.0367 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7518 -1.7715 -1.2056 33 1 1.6055 -0.2617 -2.1370 34 1 3.8532 0.4372 -1.3572 35 1 3.9995 -1.0726 -0.4259 36 1 3.4261 -1.7362 -3.1101 37 1 5.3307 -3.0401 -5.5185 38 1 2.2491 -1.6317 1.1526 39 1 4.4161 -1.7925 4.2112 40 1 4.7247 -0.4560 3.0765 41 1 4.0160 -1.9788 2.4870 42 1 2.7872 1.1638 4.5406 43 1 2.4947 -0.5966 8.9792 44 1 2.6601 1.6847 10.2538 45 1 2.8834 2.6430 6.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497192522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:02 Heat of formation + Delta-G solvation = -80.655875 kcal Electronic energy + Delta-G solvation = -26648.325323 eV Core-core repulsion = 22666.600228 eV Total energy + Delta-G solvation = -3981.725095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.49283 -41.50205 -40.20137 -37.95873 -36.24004 -35.99458 -34.09408 -33.63641 -32.64258 -31.39424 -30.22576 -29.38544 -26.20456 -25.80427 -24.50027 -23.20746 -22.42984 -22.02026 -21.42113 -21.20959 -19.76876 -19.16664 -17.99254 -17.75914 -17.25943 -17.08759 -16.76483 -16.52154 -16.17765 -15.78773 -15.70030 -15.43923 -15.22175 -15.03253 -14.78205 -14.52620 -14.27570 -13.86016 -13.83511 -13.52088 -13.42060 -13.28761 -13.09208 -12.89104 -12.87586 -12.71835 -12.37655 -12.25862 -11.98281 -11.91646 -11.63862 -11.30261 -11.00421 -10.92733 -10.87059 -10.34688 -10.12505 -9.75928 -8.99615 -7.95628 -5.24100 0.31003 1.11897 1.46219 1.47783 1.48831 1.57289 1.67837 2.05669 2.23564 2.36503 2.55625 3.38284 3.46731 3.59923 3.68762 3.76667 3.95379 4.01199 4.09461 4.11958 4.17847 4.40159 4.51838 4.57710 4.60865 4.66705 4.72334 4.76274 4.79471 4.85634 4.99182 4.99710 5.13995 5.19746 5.22810 5.28560 5.32786 5.35112 5.49397 5.52634 5.97409 6.27039 6.37613 6.43914 7.04834 7.09239 7.33725 8.09903 8.32761 9.27604 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.002238 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.181593 B =12506.591776 C =13421.694552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.076 0.924 4 C -0.120 4.120 5 C 0.153 3.847 6 N -0.746 5.746 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.075 4.075 10 N -0.967 5.967 11 Si 0.971 3.029 12 H -0.286 1.286 13 H -0.295 1.295 14 H -0.271 1.271 15 N -0.705 5.705 16 C 0.518 3.482 17 O -0.567 6.567 18 C 0.131 3.869 19 H 0.116 0.884 20 C -0.156 4.156 21 N -0.702 5.702 22 C 0.591 3.409 23 O -0.576 6.576 24 C -0.271 4.271 25 C -0.195 4.195 26 C -0.023 4.023 27 O -0.177 6.177 28 C 0.044 3.956 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.009 0.991 35 H 0.027 0.973 36 H 0.375 0.625 37 H 0.251 0.749 38 H 0.413 0.587 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.414 0.586 43 H 0.157 0.843 44 H 0.248 0.752 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 8.725 25.957 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.049 3.951 3 H 0.094 0.906 4 C -0.159 4.159 5 C 0.027 3.973 6 N -0.389 5.389 7 C -0.377 4.377 8 H 0.091 0.909 9 C -0.268 4.268 10 N -0.618 5.618 11 Si 0.800 3.200 12 H -0.213 1.213 13 H -0.222 1.222 14 H -0.196 1.196 15 N -0.357 5.357 16 C 0.303 3.697 17 O -0.446 6.446 18 C 0.023 3.977 19 H 0.134 0.866 20 C -0.214 4.214 21 N -0.355 5.355 22 C 0.381 3.619 23 O -0.457 6.457 24 C -0.275 4.275 25 C -0.215 4.215 26 C -0.089 4.089 27 O -0.072 6.072 28 C -0.027 4.027 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.027 0.973 35 H 0.045 0.955 36 H 0.207 0.793 37 H 0.060 0.940 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.252 0.748 43 H 0.175 0.825 44 H 0.264 0.736 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -8.565 9.072 26.227 29.043 hybrid contribution 0.887 -0.723 -0.986 1.510 sum -7.678 8.349 25.241 27.672 Atomic orbital electron populations 1.22093 0.93679 1.02945 1.02539 1.20859 0.94744 0.96610 0.82899 0.90619 1.21913 0.94743 1.01771 0.97425 1.20788 0.93358 0.94290 0.88886 1.42574 1.04449 1.65253 1.26626 1.19590 0.85326 1.27448 1.05294 0.90929 1.25551 1.01889 1.01378 0.97958 1.69800 1.34521 1.41860 1.15617 0.85172 0.80281 0.77963 0.76545 1.21279 1.22192 1.19642 1.46010 1.65959 1.14820 1.08921 1.20612 0.77026 0.86995 0.85039 1.90664 1.51809 1.16864 1.85290 1.20753 1.00026 0.92628 0.84341 0.86594 1.22112 0.93856 1.01977 1.03502 1.45529 1.74376 1.11571 1.04059 1.17528 0.74928 0.87275 0.82180 1.90764 1.51823 1.17704 1.85420 1.21505 1.17097 0.94257 0.94664 1.22960 1.06999 1.00739 0.90769 1.24652 1.03887 0.83955 0.96365 1.83852 1.70057 1.37901 1.15351 1.25024 0.97426 0.92718 0.87538 0.92993 0.90499 0.91304 0.90370 0.90116 0.97327 0.95511 0.79296 0.93984 0.75029 0.91310 0.91662 0.89471 0.74763 0.82497 0.73588 0.74311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.48 71.98 0.68 -2.38 16 2 C 0.15 3.59 2.57 44.99 0.12 3.70 16 3 H 0.08 2.03 7.58 -2.38 -0.02 2.01 16 4 C -0.12 -3.31 4.87 30.59 0.15 -3.16 16 5 C 0.15 5.69 6.15 86.38 0.53 6.22 16 6 N -0.75 -36.64 5.60 -343.43 -1.92 -38.57 16 7 C -0.24 -13.46 9.99 84.04 0.84 -12.62 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 9 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 10 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 11 Si 0.97 45.65 29.55 68.60 2.03 47.67 16 12 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 13 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 N -0.71 -14.90 4.42 -442.54 -1.96 -16.86 16 16 C 0.52 11.78 7.19 87.66 0.63 12.41 16 17 O -0.57 -15.72 15.50 -3.04 -0.05 -15.77 16 18 C 0.13 2.66 2.98 44.25 0.13 2.79 16 19 H 0.12 2.39 7.57 -2.39 -0.02 2.37 16 20 C -0.16 -3.00 9.38 71.98 0.68 -2.32 16 21 N -0.70 -14.00 4.94 -449.41 -2.22 -16.22 16 22 C 0.59 13.85 7.78 86.65 0.67 14.52 16 23 O -0.58 -17.52 16.65 -4.09 -0.07 -17.59 16 24 C -0.27 -5.10 6.31 -18.99 -0.12 -5.22 16 25 C -0.20 -3.20 11.01 23.65 0.26 -2.94 16 26 C -0.02 -0.24 12.03 66.89 0.80 0.56 16 27 O -0.18 -2.25 10.52 4.44 0.05 -2.20 16 28 C 0.04 0.56 11.61 67.39 0.78 1.34 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.03 0.96 7.75 -2.39 -0.02 0.95 16 36 H 0.38 19.45 7.67 -92.71 -0.71 18.74 16 37 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 38 H 0.41 7.44 8.02 -92.70 -0.74 6.70 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.51 7.57 -2.38 -0.02 1.49 16 42 H 0.41 7.01 6.76 -92.71 -0.63 6.39 16 43 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.25 0.33 8.06 -2.91 -0.02 0.30 16 45 H 0.24 1.39 7.47 -2.91 -0.02 1.37 16 Total: -1.00 -75.81 386.21 1.71 -74.10 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -1.05 Total: 34.36 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.62 Total: 9.07 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.82 Total: -129.65 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.07 Total: -35.56 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.81 1.71 -74.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497192522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.554 kcal (2) G-P(sol) polarization free energy of solvation -75.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds