Wall clock time and date at job start Tue Mar 31 2020 14:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 N 1.46500 * 109.46757 * 180.02562 * 5 4 2 7 7 C 1.36944 * 119.99630 * 180.02562 * 6 5 4 8 8 H 1.07992 * 120.00236 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99426 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00679 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99690 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47026 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46979 * 120.00076 * 11 9 7 14 14 H 1.48498 * 109.47456 * 239.99938 * 11 9 7 15 15 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 16 16 C 1.34778 * 119.99771 * 274.99826 * 15 2 1 17 17 O 1.21279 * 120.00041 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99935 * 180.02562 * 16 15 2 19 19 H 1.08995 * 109.47091 * 59.99897 * 18 16 15 20 20 C 1.53002 * 109.47014 * 300.00266 * 18 16 15 21 21 N 1.46501 * 109.47115 * 180.02562 * 18 16 15 22 22 C 1.34783 * 119.99918 * 205.00307 * 21 18 16 23 23 O 1.21613 * 119.99706 * 359.97438 * 22 21 18 24 24 C 1.47370 * 119.99952 * 179.97438 * 22 21 18 25 25 C 1.47026 * 127.19565 * 179.97438 * 24 22 21 26 26 C 1.34171 * 105.95725 * 179.97438 * 25 24 22 27 27 O 1.34215 * 109.12558 * 0.02562 * 26 25 24 28 28 C 1.33649 * 110.90905 * 359.75900 * 27 26 25 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 33 33 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 34 34 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 35 35 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 36 36 H 0.96999 * 120.00502 * 359.97438 * 6 5 4 37 37 H 0.96993 * 120.00341 * 179.97438 * 10 9 7 38 38 H 0.96998 * 120.00630 * 95.00428 * 15 2 1 39 39 H 1.08991 * 109.47341 * 59.99752 * 20 18 16 40 40 H 1.09000 * 109.46953 * 180.02562 * 20 18 16 41 41 H 1.09005 * 109.46885 * 299.99846 * 20 18 16 42 42 H 0.96997 * 120.00309 * 24.99276 * 21 18 16 43 43 H 1.08002 * 127.01341 * 359.94149 * 25 24 22 44 44 H 1.08004 * 125.43617 * 179.97438 * 26 25 24 45 45 H 1.07999 * 125.80333 * 180.27070 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3954 -1.3402 -2.7794 8 1 6.0938 -0.8600 -2.1101 9 6 5.8580 -1.9946 -3.9128 10 7 5.0068 -2.5794 -4.7288 11 14 7.6888 -2.0441 -4.2807 12 1 8.4273 -1.3169 -3.2171 13 1 8.1470 -3.4560 -4.3241 14 1 7.9476 -1.3992 -5.5931 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8581 1.1584 2.4117 18 6 2.6498 -0.7285 3.5875 19 1 3.6490 -1.1203 3.3980 20 6 1.7062 -1.8828 3.9314 21 7 2.6984 0.2127 4.7091 22 6 3.5460 -0.0040 5.7344 23 8 4.2700 -0.9811 5.7287 24 6 3.5952 0.9431 6.8625 25 6 4.4524 0.8621 8.0542 26 6 4.1513 1.9367 8.7989 27 8 3.2018 2.6517 8.1755 28 6 2.8585 2.0808 7.0168 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8533 0.4369 -1.3572 35 1 3.9995 -1.0728 -0.4258 36 1 3.4260 -1.7351 -3.1110 37 1 5.3301 -3.0363 -5.5209 38 1 2.2490 -1.6318 1.1527 39 1 1.6696 -2.5831 3.0971 40 1 2.0696 -2.3962 4.8216 41 1 0.7068 -1.4909 4.1210 42 1 2.1207 0.9918 4.7138 43 1 5.1762 0.0940 8.2835 44 1 4.6005 2.1861 9.7489 45 1 2.1218 2.4556 6.3217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497192531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:05 Heat of formation + Delta-G solvation = -81.167605 kcal Electronic energy + Delta-G solvation = -26628.196969 eV Core-core repulsion = 22646.449684 eV Total energy + Delta-G solvation = -3981.747285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.49659 -41.50295 -40.20772 -37.97089 -36.25019 -36.00730 -34.10238 -33.65390 -32.63562 -31.40298 -30.22448 -29.40308 -26.16826 -25.83699 -24.50112 -23.22660 -22.43679 -22.05354 -21.40334 -21.22523 -19.77215 -19.19302 -17.99966 -17.80628 -17.19215 -17.09133 -16.75001 -16.44473 -16.33396 -15.85918 -15.65945 -15.49575 -15.22093 -15.07108 -14.66026 -14.54967 -14.25660 -13.95691 -13.85913 -13.45521 -13.41766 -13.28360 -13.09965 -12.92223 -12.87913 -12.69611 -12.38704 -12.24079 -12.00715 -11.92615 -11.64370 -11.31140 -11.01614 -10.95776 -10.87658 -10.33882 -10.12872 -9.76321 -9.02306 -7.98288 -5.26962 0.30693 1.11208 1.46103 1.46142 1.46875 1.56515 1.67009 2.05185 2.24435 2.35290 2.53515 3.35471 3.46387 3.59393 3.67995 3.76232 3.95965 4.03516 4.08727 4.12625 4.17249 4.38780 4.52018 4.57610 4.62291 4.66163 4.73355 4.77280 4.77659 4.87447 4.99068 5.00952 5.14030 5.19226 5.21880 5.28878 5.31820 5.35501 5.46983 5.52412 5.96802 6.24913 6.37744 6.43878 7.05157 7.09282 7.31476 8.06827 8.30534 9.25063 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.002362 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.990053 B =11849.463264 C =13105.994324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.072 0.928 4 C -0.120 4.120 5 C 0.152 3.848 6 N -0.745 5.745 7 C -0.247 4.247 8 H 0.070 0.930 9 C -0.073 4.073 10 N -0.966 5.966 11 Si 0.971 3.029 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.705 5.705 16 C 0.518 3.482 17 O -0.567 6.567 18 C 0.126 3.874 19 H 0.105 0.895 20 C -0.151 4.151 21 N -0.701 5.701 22 C 0.590 3.410 23 O -0.578 6.578 24 C -0.271 4.271 25 C -0.197 4.197 26 C -0.022 4.022 27 O -0.176 6.176 28 C 0.045 3.955 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.007 0.993 35 H 0.022 0.978 36 H 0.376 0.624 37 H 0.252 0.748 38 H 0.413 0.587 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.415 0.585 43 H 0.155 0.845 44 H 0.248 0.752 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.743 7.909 26.655 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.048 3.952 3 H 0.090 0.910 4 C -0.158 4.158 5 C 0.026 3.974 6 N -0.388 5.388 7 C -0.379 4.379 8 H 0.088 0.912 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.800 3.200 12 H -0.195 1.195 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.357 5.357 16 C 0.304 3.696 17 O -0.446 6.446 18 C 0.017 3.983 19 H 0.122 0.878 20 C -0.210 4.210 21 N -0.355 5.355 22 C 0.379 3.621 23 O -0.459 6.459 24 C -0.276 4.276 25 C -0.217 4.217 26 C -0.088 4.088 27 O -0.071 6.071 28 C -0.025 4.025 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.025 0.975 35 H 0.040 0.960 36 H 0.208 0.792 37 H 0.061 0.939 38 H 0.250 0.750 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.253 0.747 43 H 0.173 0.827 44 H 0.264 0.736 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -11.387 8.366 26.817 30.312 hybrid contribution 1.050 -0.684 -0.985 1.594 sum -10.338 7.682 25.832 28.865 Atomic orbital electron populations 1.22073 0.93121 1.03134 1.02660 1.20874 0.95126 0.96391 0.82818 0.91017 1.21916 0.94330 1.01941 0.97600 1.20790 0.93735 0.94159 0.88762 1.42561 1.04437 1.65321 1.26515 1.19612 0.85338 1.27616 1.05318 0.91232 1.25539 1.01942 1.01243 0.97853 1.69797 1.34449 1.41896 1.15522 0.85111 0.80239 0.77093 0.77544 1.19465 1.21734 1.21837 1.46011 1.65991 1.14793 1.08905 1.20600 0.77105 0.86871 0.85058 1.90661 1.51847 1.16747 1.85394 1.20796 1.02525 0.90524 0.84421 0.87754 1.22093 0.98848 0.96253 1.03768 1.45506 1.41878 1.28588 1.19487 1.17566 0.78634 0.84317 0.81567 1.90774 1.43765 1.31454 1.79925 1.21501 1.06681 1.00214 0.99204 1.22964 1.03027 1.01688 0.93976 1.24638 0.92101 0.91649 1.00376 1.83850 1.46631 1.47382 1.29202 1.25034 0.98814 0.91534 0.87135 0.92587 0.90657 0.91019 0.90134 0.89997 0.97547 0.96026 0.79161 0.93872 0.75040 0.88979 0.91617 0.90663 0.74661 0.82680 0.73575 0.74098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.48 71.98 0.68 -2.14 16 2 C 0.15 3.57 2.57 44.99 0.12 3.68 16 3 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 4 C -0.12 -3.34 4.87 30.60 0.15 -3.19 16 5 C 0.15 5.89 6.15 86.38 0.53 6.42 16 6 N -0.75 -37.52 5.60 -343.44 -1.92 -39.44 16 7 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 10 N -0.97 -58.77 13.06 21.65 0.28 -58.48 16 11 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 14 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 15 N -0.71 -14.94 4.42 -442.53 -1.96 -16.90 16 16 C 0.52 11.85 7.19 87.66 0.63 12.48 16 17 O -0.57 -15.77 15.50 -3.03 -0.05 -15.81 16 18 C 0.13 2.58 2.99 44.25 0.13 2.71 16 19 H 0.10 2.48 7.58 -2.39 -0.02 2.46 16 20 C -0.15 -2.36 9.38 71.98 0.68 -1.69 16 21 N -0.70 -14.12 4.94 -449.41 -2.22 -16.34 16 22 C 0.59 14.37 7.78 86.65 0.67 15.05 16 23 O -0.58 -18.60 16.65 -4.07 -0.07 -18.67 16 24 C -0.27 -5.29 6.31 -18.99 -0.12 -5.41 16 25 C -0.20 -3.41 11.01 23.65 0.26 -3.15 16 26 C -0.02 -0.25 12.03 66.89 0.80 0.56 16 27 O -0.18 -2.25 10.52 4.49 0.05 -2.20 16 28 C 0.05 0.58 11.61 67.40 0.78 1.37 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 34 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.02 0.83 7.75 -2.39 -0.02 0.82 16 36 H 0.38 19.78 7.67 -92.71 -0.71 19.06 16 37 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.41 7.47 8.02 -92.71 -0.74 6.72 16 39 H 0.09 1.13 7.56 -2.39 -0.02 1.11 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.42 6.80 6.76 -92.71 -0.63 6.18 16 43 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 44 H 0.25 0.46 8.06 -2.91 -0.02 0.44 16 45 H 0.24 1.28 7.47 -2.91 -0.02 1.26 16 Total: -1.00 -78.26 386.21 1.71 -76.55 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -1.05 Total: 32.92 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 6.62 Total: 9.81 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -5.82 Total: -131.16 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.07 Total: -36.69 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -78.26 1.71 -76.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497192531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.622 kcal (2) G-P(sol) polarization free energy of solvation -78.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds